AT1G61890

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22867689 .. 22871358
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61890.2

Sequence Viewer

Length: 1506 bp
ATGAATTCAGAATCGCTAGAAAATCTTCACCGTCCATTAATCGAATCATCGAAGTCGTTCGTCGATTATCGTCTCGAGACTGTGTTAACAGATCGAGAGTTACCGTATTTTCGCCGGATTTATCTAGCGATGATGATTGAGATGAAGTTTCTCTTTCATCTGGCGGCTCCGGCGATCTTTGTTTACGTCATCAACAACGGCATGTCAATTCTTACACGTATCTTCGCTGGACACGTAGGAAGCTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTCAACATGTTCACCTATGGACTTCTGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTGGTCAAGCACATGGAGCTCATAGATACGAAATGCTTGGAGTTTACCTCCAAAGATCAACAGTTGTTCTAATCCTAACATGTCTACCAATGTCATTTCTCTTCCTCTTCTCAAATCCGATCCTCACAGCACTTGGAGAGCCAGAGCAAGTGGCAACATTGGCTTCAGTATTCGTCTACGGTATGATCCCGGTGATCTTCGCTTACGCAGTCAATTTCCCTATCCAGAAGTTTCTCCAATCACAAAGCATCGTCACTCCAAGTGCCTACATATCAGCTGCAACGCTTGTGATCCATCTCATACTTTCGTGGATCGCTGTGTATCGTCTTGGTTACGGTCTTTTGGCTTTGTCTTTGATACATAGCTTCTCGTGGTGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAATGAGTCCGAGATGTCGTCGGACTTGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTGGGATTTTTTCCGATTATCAGCTGCTTCTGCCGTCATGCTTTGTCTTGAATCTTGGTACTCTCAGATTCTTGTTTTACTCGCCGGACTTCTCAAGAACCCTGAGCTTGCTTTGGATTCTCTTGCTATCTGCATGTCAATTTCTGCAATCTCATTCATGGTCTCCGTTGGATTCAACGCAGCTGCAAGTGTGAGAGTAAGCAACGAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTCTCCACAGTCGTGACAACGGGAGTATCATTCTTACTATCGGTTTTCGAAGCCATCGTGGTCTTATCGTGGCGTCACGTCATCAGCTATGCGTTTACTGATAGTCCAGCAGTGGCTGAGGCCGTTGCGGATTTATCTCCCTTTTTAGCCATCACAATTGTCCTCAATGGAATTCAGCCTGTTTTGTCCGGTGTGGCTGTTGGATGTGGATGGCAAGCATTTGTTGCGTACGTAAACATTGGATGTTACTACGTTGTGGGGATTCCAGTGGGATTCGTTCTTGGCTTCACTTATGATATGGGAGCTAAGGGAATATGGACTGGGATGATTGGTGGTACTTTAATGCAAACAATAATCTTAGTGATTGTCACTTTACGAACTGATTGGGACAAAGAGGTTGAGAAAGCTTCGAGCAGATTGGACCAGTGGGAAGAGAGCCGTGAGCCGCTTTTGAAGCAATAA

Protein Analysis

501

Amino Acids

55.13

Weight (kDa)

6.09

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 57 - 217 5.6e-39 MatE
MatE PF01554 279 - 441 1.2e-33 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 421, 513
AccII CGCG 1 cut(s) 1043
AciI CCGC 6 cut(s) 164, 255, 258, 1041, 1172, 1490
AclWI GGATC 5 cut(s) 451, 517, 622, 656, 722
AcsI RAATTY 2 cut(s) 4, 1215
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 1117
AfaI GTAC 3 cut(s) 866, 1274, 1381
AflIII ACRYGT 4 cut(s) 215, 232, 285, 416
AgsI TTSAA 5 cut(s) 283, 800, 857, 982, 1498
AjiI CACGTC 1 cut(s) 1123
AleI CACNNNNGTG 1 cut(s) 1055
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 71, 77, 973
AlwI GGATC 5 cut(s) 451, 517, 622, 656, 722
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 2 cut(s) 74, 1030
AoxI GGCC 1 cut(s) 1164
ApeKI GCWGC 5 cut(s) 614, 830, 986, 989, 1037
ApoI RAATTY 2 cut(s) 4, 1215
AseI ATTAAT 1 cut(s) 38
Asp700I GAANNNNTTC 2 cut(s) 24, 56
AspS9I GGNCC 1 cut(s) 1465
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 20, 283, 541
AsuII TTCGAA 2 cut(s) 246, 1092
AvaI CYCGRG 2 cut(s) 74, 1030
AvaII GGWCC 1 cut(s) 1465
BaeI ACNNNNGTAYC 2 cut(s) 1053, 1086
BanII GRGCYC 1 cut(s) 358
BauI CACGAG 1 cut(s) 706
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 5 cut(s) 601, 817, 976, 998, 1049
BccI CCATC 4 cut(s) 639, 1106, 1202, 1248
BceAI ACGGC 4 cut(s) 214, 824, 1151, 1467
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 3 cut(s) 71, 77, 973
BfaI CTAG 3 cut(s) 17, 125, 1016
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 1465
BmeT110I CYCGRG 2 cut(s) 74, 1030
BmgBI CACGTC 1 cut(s) 1123
BmgT120I GGNCC 1 cut(s) 1465
BmiI GGNNCC 2 cut(s) 168, 1021
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 1374
BmsI GCATC 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 1374
BplI GAGNNNNNCTC 2 cut(s) 369, 401
Bpu10I CCTNAGC 3 cut(s) 909, 1161, 1350
Bpu14I TTCGAA 2 cut(s) 246, 1092
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 1 cut(s) 527
BsaAI YACGTR 3 cut(s) 218, 235, 1276
BsaHI GRCGYC 1 cut(s) 1117
BsaI GGTCTC 1 cut(s) 973
BsaWI WCCGGW 1 cut(s) 1232
Bse1I ACTGG 3 cut(s) 1310, 1369, 1468
BseGI GGATG 4 cut(s) 1253, 1259, 1292, 1374
BseMII CTCAG 4 cut(s) 743, 884, 900, 1152
BseNI ACTGG 3 cut(s) 1310, 1369, 1468
BseXI GCAGC 5 cut(s) 601, 817, 976, 998, 1049
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 1043
BshFI GGCC 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 2 cut(s) 74, 1030
BsiSI CCGG 6 cut(s) 115, 170, 527, 891, 1023, 1233
BsiWI CGTACG 1 cut(s) 1272
BslFI GGGAC 1 cut(s) 1445
BsmAI GTCTC 3 cut(s) 71, 77, 973
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 1445
BsnI GGCC 1 cut(s) 1166
Bso31I GGTCTC 1 cut(s) 973
BsoBI CYCGRG 2 cut(s) 74, 1030
Bsp119I TTCGAA 2 cut(s) 246, 1092
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
BspACI CCGC 6 cut(s) 164, 255, 258, 1041, 1172, 1490
BspANI GGCC 1 cut(s) 1166
BspCNI CTCAG 4 cut(s) 742, 883, 901, 1153
BspFNI CGCG 1 cut(s) 1043
BspLI GGNNCC 2 cut(s) 168, 1021
BspPI GGATC 5 cut(s) 451, 517, 622, 656, 722
BspT104I TTCGAA 2 cut(s) 246, 1092
BspTNI GGTCTC 1 cut(s) 973
BsrI ACTGG 3 cut(s) 1310, 1369, 1468
BssMI GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
BssNI GRCGYC 1 cut(s) 1117
BssSI CACGAG 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 706
Bst4CI ACNGT 8 cut(s) 32, 82, 105, 275, 400, 518, 674, 1054
Bst6I CTCTTC 3 cut(s) 443, 449, 1470
BstACI GRCGYC 1 cut(s) 1117
BstAPI GCANNNNNTGC 1 cut(s) 1268
BstBAI YACGTR 3 cut(s) 218, 235, 1276
BstBI TTCGAA 2 cut(s) 246, 1092
BstC8I GCNNGC 2 cut(s) 915, 1260
BstDEI CTNAG 6 cut(s) 729, 870, 909, 1161, 1350, 1402
BstF5I GGATG 4 cut(s) 1253, 1259, 1292, 1374
BstFNI CGCG 1 cut(s) 1043
BstKTI GATC 9 cut(s) 94, 177, 395, 459, 525, 534, 630, 651, 717
BstMAI GTCTC 3 cut(s) 71, 77, 973
BstMBI GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
BstMWI GCNNNNNNNGC 6 cut(s) 170, 353, 497, 836, 1268, 1498
BstNSI RCATGY 4 cut(s) 205, 289, 420, 943
BstSCI CCNGG 1 cut(s) 525
BstSNI TACGTA 1 cut(s) 1276
BstUI CGCG 1 cut(s) 1043
BstV1I GCAGC 5 cut(s) 601, 817, 976, 998, 1049
BsuRI GGCC 1 cut(s) 1166
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 1123
BtsCI GGATG 4 cut(s) 1253, 1259, 1292, 1374
BtsI GCAGTG 2 cut(s) 330, 1161
BtsIMutI CAGTG 5 cut(s) 280, 330, 1161, 1317, 1475
Cac8I GCNNGC 2 cut(s) 915, 1260
CaiI CAGNNNCTG 1 cut(s) 1160
Cfr13I GGNCC 1 cut(s) 1465
CseI GACGC 1 cut(s) 1106
Csp6I GTAC 3 cut(s) 865, 1273, 1380
CviAII CATG 7 cut(s) 202, 286, 350, 417, 844, 940, 964
CviQI GTAC 3 cut(s) 865, 1273, 1380
DdeI CTNAG 6 cut(s) 729, 870, 909, 1161, 1350, 1402
DpnI GATC 9 cut(s) 93, 176, 394, 458, 524, 533, 629, 650, 716
DpnII GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
Eam1104I CTCTTC 3 cut(s) 443, 449, 1470
EarI CTCTTC 3 cut(s) 443, 449, 1470
Ecl136II GAGCTC 1 cut(s) 356
Eco105I TACGTA 1 cut(s) 1276
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 1465
Eco53kI GAGCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 2 cut(s) 74, 1030
EcoICRI GAGCTC 1 cut(s) 356
EcoRI GAATTC 2 cut(s) 4, 1215
EcoT38I GRGCYC 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 7 cut(s) 205, 289, 353, 420, 847, 943, 967
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 1445
FatI CATG 7 cut(s) 201, 285, 349, 416, 843, 939, 963
FblI GTMKAC 2 cut(s) 421, 513
FokI GGATG 4 cut(s) 1260, 1266, 1299, 1381
FriOI GRGCYC 1 cut(s) 358
FspBI CTAG 3 cut(s) 17, 125, 1016
HaeIII GGCC 1 cut(s) 1166
HapII CCGG 6 cut(s) 115, 170, 527, 891, 1023, 1233
HgaI GACGC 1 cut(s) 1106
Hin1I GRCGYC 1 cut(s) 1117
Hin1II CATG 7 cut(s) 205, 289, 353, 420, 847, 943, 967
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 3 cut(s) 241, 792, 1449
HinfI GANTC 9 cut(s) 11, 44, 751, 857, 874, 923, 978, 1306, 1317
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 6 cut(s) 115, 170, 527, 891, 1023, 1233
HphI GGTGA 3 cut(s) 20, 283, 541
Hpy166II GTNNAC 8 cut(s) 87, 184, 291, 382, 422, 514, 1140, 1279
Hpy188I TCNGA 7 cut(s) 10, 456, 732, 756, 768, 821, 873
Hpy188III TCNNGA 7 cut(s) 74, 76, 95, 562, 854, 901, 1057
Hpy8I GTNNAC 8 cut(s) 87, 184, 291, 382, 422, 514, 1140, 1279
Hpy99I CGWCG 2 cut(s) 65, 768
HpyAV CCTTC 2 cut(s) 770, 794
HpyCH4III ACNGT 8 cut(s) 32, 82, 105, 275, 400, 518, 674, 1054
HpyCH4IV ACGT 6 cut(s) 186, 217, 234, 1122, 1275, 1296
HpyCH4V TGCA 6 cut(s) 323, 617, 939, 953, 992, 1390
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 353, 497, 836, 1268, 1498
HpyF3I CTNAG 6 cut(s) 729, 870, 909, 1161, 1350, 1402
HpySE526I ACGT 6 cut(s) 186, 217, 234, 1122, 1275, 1296
Hsp92I GRCGYC 1 cut(s) 1117
Hsp92II CATG 7 cut(s) 205, 289, 353, 420, 847, 943, 967
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
LmnI GCTCC 4 cut(s) 172, 353, 1019, 1346
Lsp1109I GCAGC 5 cut(s) 601, 817, 976, 998, 1049
LweI GCATC 1 cut(s) 594
MaeI CTAG 3 cut(s) 17, 125, 1016
MaeII ACGT 6 cut(s) 186, 217, 234, 1122, 1275, 1296
MaeIII GTNAC 7 cut(s) 99, 589, 668, 1057, 1118, 1289, 1411
MalI GATC 9 cut(s) 93, 176, 394, 458, 524, 533, 629, 650, 716
MboI GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
MboII GAAGA 6 cut(s) 17, 214, 430, 436, 526, 1487
MfeI CAATTG 1 cut(s) 1200
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 6 cut(s) 4, 207, 550, 945, 1200, 1215
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 4 cut(s) 746, 767, 955, 1225
MnlI CCTC 6 cut(s) 395, 452, 470, 1156, 1217, 1432
MroXI GAANNNNTTC 2 cut(s) 24, 56
MseI TTAA 4 cut(s) 38, 86, 744, 1385
MslI CAYNNNNRTG 2 cut(s) 722, 1055
MspA1I CMGCKG 3 cut(s) 614, 830, 989
MspI CCGG 6 cut(s) 115, 170, 527, 891, 1023, 1233
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 1200
MvnI CGCG 1 cut(s) 1043
MwoI GCNNNNNNNGC 6 cut(s) 170, 353, 497, 836, 1268, 1498
NciI CCSGG 1 cut(s) 527
NdeII GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
NlaIII CATG 7 cut(s) 205, 289, 353, 420, 847, 943, 967
NlaIV GGNNCC 2 cut(s) 168, 1021
NmuCI GTSAC 4 cut(s) 589, 1057, 1118, 1411
NspI RCATGY 4 cut(s) 205, 289, 420, 943
NspV TTCGAA 2 cut(s) 246, 1092
OliI CACNNNNGTG 1 cut(s) 1055
PaeR7I CTCGAG 1 cut(s) 74
PciI ACATGT 2 cut(s) 285, 416
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 1098
PdmI GAANNNNTTC 2 cut(s) 24, 56
PfeI GAWTC 8 cut(s) 11, 44, 857, 874, 923, 978, 1306, 1317
Pfl23II CGTACG 1 cut(s) 1272
PleI GAGTC 1 cut(s) 759
PpsI GAGTC 1 cut(s) 759
Ppu21I YACGTR 3 cut(s) 218, 235, 1276
PscI ACATGT 2 cut(s) 285, 416
PshBI ATTAAT 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 358
PspLI CGTACG 1 cut(s) 1272
PspN4I GGNNCC 2 cut(s) 168, 1021
PspPI GGNCC 1 cut(s) 1465
PstNI CAGNNNCTG 1 cut(s) 1160
PvuII CAGCTG 3 cut(s) 614, 830, 989
RsaI GTAC 3 cut(s) 866, 1274, 1381
RsaNI GTAC 3 cut(s) 865, 1273, 1380
RseI CAYNNNNRTG 2 cut(s) 722, 1055
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 4 cut(s) 38, 86, 744, 1385
Sau3AI GATC 9 cut(s) 91, 174, 392, 456, 522, 531, 627, 648, 714
Sau96I GGNCC 1 cut(s) 1465
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 2 cut(s) 246, 1092
SinI GGWCC 1 cut(s) 1465
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 722, 1055
SmlI CTYRAG 2 cut(s) 74, 899
SmoI CTYRAG 2 cut(s) 74, 899
SnaBI TACGTA 1 cut(s) 1276
Sse9I AATT 6 cut(s) 4, 207, 550, 945, 1200, 1215
SsiI CCGC 6 cut(s) 164, 255, 258, 1041, 1172, 1490
SspMI CTAG 3 cut(s) 17, 125, 1016
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 8 cut(s) 32, 82, 105, 275, 400, 518, 674, 1054
TaiI ACGT 6 cut(s) 189, 220, 237, 1125, 1278, 1299
TaqI TCGA 8 cut(s) 42, 50, 63, 75, 94, 246, 1092, 1454
TasI AATT 6 cut(s) 4, 207, 550, 945, 1200, 1215
TauI GCSGC 5 cut(s) 167, 257, 260, 1043, 1492
TfiI GAWTC 8 cut(s) 11, 44, 857, 874, 923, 978, 1306, 1317
Tru1I TTAA 4 cut(s) 38, 86, 744, 1385
Tru9I TTAA 4 cut(s) 38, 86, 744, 1385
TscAI CASTG 5 cut(s) 280, 330, 1161, 1317, 1475
TseFI GTSAC 4 cut(s) 589, 1057, 1118, 1411
TseI GCWGC 5 cut(s) 614, 830, 986, 989, 1037
Tsp45I GTSAC 4 cut(s) 589, 1057, 1118, 1411
TspDTI ATGAA 4 cut(s) 17, 146, 158, 952
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 5 cut(s) 280, 330, 1161, 1317, 1475
VpaK11BI GGWCC 1 cut(s) 1465
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 2 cut(s) 4, 1215
XceI RCATGY 4 cut(s) 205, 289, 420, 943
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 421, 513
XmnI GAANNNNTTC 2 cut(s) 24, 56
XspI CTAG 3 cut(s) 17, 125, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.