RLG00000031125

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
2346250 .. 2350328
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031125

Sequence Viewer

Length: 1548 bp
ATGGGTTCTCAAGGAGAGCTCCACCAACCCATCTTAAGCTCCGAACCAGAACCCGAATCCGAATCAGCAGCCTCCGCTAGTCATGGCGAGGAGTCATCTCCACTTGAGAAGGTACTATCCGACTCCCAGTTGCCGTGTTTCAAGAGGCTCGGATTGGCCACATGGATTGAACTCAAGCTCCTCTTCCGCCTCGCTGCCCCTGCCGTCTTCGTTTACGTCATCAACAACACTATGTCACTTTCCACACGTGTCTTCGCAGGCCACCTGGGTAATCTCGAGCTTGCAGCTGCCTCCCTCGGCAATAGCGGCATCCAACTCTTTGCCTACGGCCTCATGTTAGGTATGGGAAGCGCGGTGGAGACTCTATGTGGGCAAGCCTACGGTGCCCACAAGTACGACATGCTAGGCATATATCTCCAAAGAGCAACCATAGTCCTAACCATCACCGGACTTCCACTTCTTGCAGTCTTCCTCCTATGCAAGCCCTTGTTGCTTTTACTCGGAGAATCATCAGCCTTAGCCTCTGAAGCCGCAGTTTTCGTCTACGGTCTGATCCCACAAATCTTCGCTTACGCTATCAATTTCCCAATCCAAAAGTTTCTCCAGGCCCAGAGAATTGTACTTCCAAGTGCCTACATATCTGCGGCTACGCTTGGGGTGCATTTATTGCTAAGTTGGGTGGCTGTATACGAGTTAGGTTGGGGGTTGATTGGTGCCTCGTTGGTTTTGAGCTTGTCTTGGTGGATCATTGTAATTGCTCAGTTCGTCTACATTTTGACAAGTAGCAAGTGTAAGCAGACATGGAGTGGGTTTAATTTGCAGGCGTTTTCGGGGTTGTGGGAGTTCGTGAAGTTATCGGCTGCATCGGCTGTGATGTTGTGCTTGGAGGTGTGGTACTATCAGGTGCTAGTGTTGATTGCTGGCTTGCTAAAGGACCCTGAGCTTGCTTTGAACTCTTTGGCTGTATGCATGGCGATAAATGTAGTACTGATGATGGTTTCAGTTGGATTTAACGCAGCTATAAGTGTGCGAGTAAGCAATGAGCTAGGTGCTGGGAATCCAAAGTCGGCAGCATTCTCGGTTGTGACAGTAACACTGGTGTCATTGGCTATTGCTATAGTTGAAGCCGCCATTGTGCTGTTGCTCCGCGATGTAATCAGTTACGCCTTTACCAGTGGTGAAACTGTTGCCGAAGCTGTCTCTAAACTCACTCCGTATTTGGCCGTCACTCTAATCCTTAATGGGATTCAACCTGTCCTCTCAGGGGTGGCTGTTGGGTGTGGATGGCAAGCTTTTGTGGCATATGTGAATGTGGGATGCTACTACGTGGTTGGAATCCCATTAGGCTGTCTTCTGGGATTTAAGTTCGATCTTGGTGCTCAGGGAATATGGTCGGGGATGATAGGAGGAACATTGATGCAGACCATCATCTTATTGTGGGTAACATTTCGTACTGACTGGATTAAAGAGGTGGCCACGAGTAAAAAGCGTTTGGAAAAATGGGACGACTCTAATAAACAGCAGCAGCAACCTCTTCTGAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

55.36

Weight (kDa)

6.01

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 67 - 227 2.4e-34 MatE
MatE PF01554 289 - 449 3.8e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 383, 713
AccI GTMKAC 3 cut(s) 543, 687, 768
AccII CGCG 2 cut(s) 353, 1149
AciI CCGC 8 cut(s) 75, 187, 306, 353, 531, 644, 1128, 1147
AclWI GGATC 2 cut(s) 547, 752
AcoI YGGCCR 3 cut(s) 156, 1221, 1473
AcuI CTGAAG 1 cut(s) 546
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 6 cut(s) 114, 395, 621, 896, 987, 1453
AfiI CCNNNNNNNGG 1 cut(s) 1264
AflII CTTAAG 1 cut(s) 34
AflIII ACRYGT 2 cut(s) 245, 247
AgsI TTSAA 5 cut(s) 142, 170, 952, 1124, 1250
AjnI CCWGG 2 cut(s) 264, 603
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
Alw21I GWGCWC 2 cut(s) 21, 1381
Alw26I GTCTC 2 cut(s) 353, 1204
AlwI GGATC 2 cut(s) 547, 752
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 6 cut(s) 156, 259, 328, 606, 1221, 1473
ApeKI GCWGC 9 cut(s) 68, 194, 284, 287, 860, 1016, 1070, 1522, 1525
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 607, 934
AsuHPI GGTGA 2 cut(s) 436, 1190
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 934
BaeGI GKGCMC 1 cut(s) 388
BalI TGGCCA 2 cut(s) 158, 1475
BanI GGYRCC 2 cut(s) 383, 713
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 1477
BbrPI CACGTG 1 cut(s) 248
BbsI GAAGAC 4 cut(s) 199, 244, 460, 1343
Bbv12I GWGCWC 2 cut(s) 21, 1381
BbvI GCAGC 9 cut(s) 80, 181, 274, 296, 847, 1028, 1082, 1534, 1537
BccI CCATC 5 cut(s) 38, 449, 988, 1278, 1433
BceAI ACGGC 4 cut(s) 118, 188, 343, 1208
BcgI CGANNNNNNTGC 4 cut(s) 1059, 1093, 1358, 1392
BciT130I CCWGG 2 cut(s) 266, 605
BcoDI GTCTC 2 cut(s) 353, 1204
BfaI CTAG 4 cut(s) 78, 404, 908, 1046
BfmI CTRYAG 1 cut(s) 1116
BfrI CTTAAG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 987
Bme1390I CCNGG 2 cut(s) 266, 605
Bme18I GGWCC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 607, 934
BmiI GGNNCC 3 cut(s) 385, 715, 936
BmrFI CCNGG 2 cut(s) 266, 605
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 4 cut(s) 318, 872, 1307, 1407
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 4 cut(s) 199, 244, 460, 1343
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 3 cut(s) 517, 939, 1380
BpuEI CTTGAG 2 cut(s) 125, 158
BsaAI YACGTR 2 cut(s) 248, 1327
BsaJI CCNNGG 2 cut(s) 265, 295
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 4 cut(s) 162, 192, 878, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse1I ACTGG 4 cut(s) 127, 1101, 1173, 1463
Bse3DI GCAATG 1 cut(s) 1045
BseBI CCWGG 2 cut(s) 266, 605
BseDI CCNNGG 2 cut(s) 265, 295
BseGI GGATG 4 cut(s) 309, 1289, 1322, 1404
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMI GCAATG 1 cut(s) 1045
BseMII CTCAG 4 cut(s) 773, 930, 1275, 1394
BseNI ACTGG 4 cut(s) 127, 1101, 1173, 1463
BseRI GAGGAG 2 cut(s) 104, 170
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 9 cut(s) 80, 181, 274, 296, 847, 1028, 1082, 1534, 1537
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 2 cut(s) 353, 1149
BshFI GGCC 6 cut(s) 158, 261, 330, 608, 1223, 1475
BshNI GGYRCC 2 cut(s) 383, 713
BsiHKAI GWGCWC 2 cut(s) 21, 1381
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 1517
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 2 cut(s) 353, 1204
BsmFI GGGAC 1 cut(s) 1517
BsmI GAATGC 1 cut(s) 1073
BsnI GGCC 6 cut(s) 158, 261, 330, 608, 1223, 1475
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 3 cut(s) 21, 388, 1381
Bsp143I GATC 3 cut(s) 552, 744, 1369
BspACI CCGC 8 cut(s) 75, 187, 306, 353, 531, 644, 1128, 1147
BspANI GGCC 6 cut(s) 158, 261, 330, 608, 1223, 1475
BspCNI CTCAG 4 cut(s) 772, 931, 1274, 1393
BspFNI CGCG 2 cut(s) 353, 1149
BspLI GGNNCC 3 cut(s) 385, 715, 936
BspPI GGATC 2 cut(s) 547, 752
BspT107I GGYRCC 2 cut(s) 383, 713
BspTI CTTAAG 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 1045
BsrI ACTGG 4 cut(s) 127, 1101, 1173, 1463
BssECI CCNNGG 2 cut(s) 265, 295
BssMI GATC 3 cut(s) 552, 744, 1369
BssNAI GTATAC 1 cut(s) 688
BssSI CACGAG 1 cut(s) 1477
Bst1107I GTATAC 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 1477
Bst2UI CCWGG 2 cut(s) 266, 605
Bst4CI ACNGT 4 cut(s) 383, 548, 1090, 1186
Bst6I CTCTTC 2 cut(s) 188, 1539
BstAFI CTTAAG 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBAI YACGTR 2 cut(s) 248, 1327
BstC8I GCNNGC 9 cut(s) 259, 282, 375, 482, 822, 922, 926, 945, 1290
BstDEI CTNAG 6 cut(s) 517, 671, 759, 939, 1261, 1380
BstF5I GGATG 4 cut(s) 309, 1289, 1322, 1404
BstFNI CGCG 2 cut(s) 353, 1149
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 3 cut(s) 555, 747, 1372
BstMAI GTCTC 2 cut(s) 353, 1204
BstMBI GATC 3 cut(s) 552, 744, 1369
BstNI CCWGG 2 cut(s) 266, 605
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 264, 603
BstSFI CTRYAG 1 cut(s) 1116
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 353, 1149
BstV1I GCAGC 9 cut(s) 80, 181, 274, 296, 847, 1028, 1082, 1534, 1537
BstV2I GAAGAC 4 cut(s) 199, 244, 460, 1343
BstZ17I GTATAC 1 cut(s) 688
BsuRI GGCC 6 cut(s) 158, 261, 330, 608, 1223, 1475
BtgZI GCGATG 1 cut(s) 1164
BtsCI GGATG 4 cut(s) 309, 1289, 1322, 1404
BtsIMutI CAGTG 2 cut(s) 1094, 1180
Cac8I GCNNGC 9 cut(s) 259, 282, 375, 482, 822, 922, 926, 945, 1290
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 607, 934
Csp6I GTAC 6 cut(s) 113, 394, 620, 895, 986, 1452
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 6 cut(s) 83, 162, 334, 400, 801, 970
CviQI GTAC 6 cut(s) 113, 394, 620, 895, 986, 1452
DdeI CTNAG 6 cut(s) 517, 671, 759, 939, 1261, 1380
DpnI GATC 3 cut(s) 554, 746, 1371
DpnII GATC 3 cut(s) 552, 744, 1369
EaeI YGGCCR 3 cut(s) 156, 1221, 1473
Eam1104I CTCTTC 2 cut(s) 188, 1539
EarI CTCTTC 2 cut(s) 188, 1539
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 934
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 546
Eco72I CACGTG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 2 cut(s) 264, 603
EcoT22I ATGCAT 1 cut(s) 971
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 6 cut(s) 86, 165, 337, 403, 804, 973
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 1517
FatI CATG 6 cut(s) 82, 161, 333, 399, 800, 969
FauNDI CATATG 1 cut(s) 1303
FblI GTMKAC 3 cut(s) 543, 687, 768
FokI GGATG 4 cut(s) 296, 1296, 1329, 1411
FriOI GRGCYC 1 cut(s) 21
FspBI CTAG 4 cut(s) 78, 404, 908, 1046
GlaI GCGC 1 cut(s) 352
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 6 cut(s) 158, 261, 330, 608, 1223, 1475
HapII CCGG 1 cut(s) 447
HhaI GCGC 1 cut(s) 353
Hin1II CATG 6 cut(s) 86, 165, 337, 403, 804, 973
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 1290
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 436, 1190
Hpy166II GTNNAC 4 cut(s) 214, 544, 688, 769
Hpy188I TCNGA 8 cut(s) 43, 61, 121, 152, 503, 526, 552, 1539
Hpy188III TCNNGA 3 cut(s) 142, 275, 847
Hpy8I GTNNAC 4 cut(s) 214, 544, 688, 769
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 4 cut(s) 383, 548, 1090, 1186
HpyCH4IV ACGT 3 cut(s) 216, 247, 1326
HpyCH4V TGCA 8 cut(s) 284, 464, 480, 661, 820, 863, 969, 1420
HpyF3I CTNAG 6 cut(s) 517, 671, 759, 939, 1261, 1380
HpySE526I ACGT 3 cut(s) 216, 247, 1326
Hsp92II CATG 6 cut(s) 86, 165, 337, 403, 804, 973
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 3 cut(s) 552, 744, 1369
LmnI GCTCC 4 cut(s) 24, 44, 183, 1149
Lsp1109I GCAGC 9 cut(s) 80, 181, 274, 296, 847, 1028, 1082, 1534, 1537
LweI GCATC 4 cut(s) 318, 872, 1307, 1407
MaeI CTAG 4 cut(s) 78, 404, 908, 1046
MaeII ACGT 3 cut(s) 216, 247, 1326
MaeIII GTNAC 6 cut(s) 234, 1084, 1090, 1160, 1225, 1441
MalI GATC 3 cut(s) 554, 746, 1371
MboI GATC 3 cut(s) 552, 744, 1369
MboII GAAGA 7 cut(s) 175, 199, 244, 460, 556, 1343, 1526
MhlI GDGCHC 3 cut(s) 21, 388, 1381
MlsI TGGCCA 2 cut(s) 158, 1475
MluCI AATT 4 cut(s) 580, 615, 753, 814
MluNI TGGCCA 2 cut(s) 158, 1475
MlyI GAGTC 4 cut(s) 101, 116, 355, 1502
MmeI TCCRAC 4 cut(s) 144, 337, 985, 1312
Mox20I TGGCCA 2 cut(s) 158, 1475
Mph1103I ATGCAT 1 cut(s) 971
MscI TGGCCA 2 cut(s) 158, 1475
MseI TTAA 6 cut(s) 35, 813, 1011, 1239, 1362, 1464
Msp20I TGGCCA 2 cut(s) 158, 1475
MspA1I CMGCKG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 2 cut(s) 266, 605
Mva1269I GAATGC 1 cut(s) 1073
MvaI CCWGG 2 cut(s) 266, 605
MvnI CGCG 2 cut(s) 353, 1149
NdeI CATATG 1 cut(s) 1303
NdeII GATC 3 cut(s) 552, 744, 1369
NlaIII CATG 6 cut(s) 86, 165, 337, 403, 804, 973
NlaIV GGNNCC 3 cut(s) 385, 715, 936
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 3 cut(s) 234, 1084, 1225
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 275
PctI GAATGC 1 cut(s) 1073
PfeI GAWTC 6 cut(s) 56, 62, 506, 1057, 1246, 1335
PleI GAGTC 4 cut(s) 100, 116, 355, 1502
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 4 cut(s) 100, 116, 355, 1502
Ppu21I YACGTR 2 cut(s) 248, 1327
PpuMI RGGWCCY 1 cut(s) 934
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 2 cut(s) 264, 603
PspCI CACGTG 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 264, 603
PspN4I GGNNCC 3 cut(s) 385, 715, 936
PspPI GGNCC 2 cut(s) 607, 934
PspPPI RGGWCCY 1 cut(s) 934
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 6 cut(s) 114, 395, 621, 896, 987, 1453
RsaNI GTAC 6 cut(s) 113, 394, 620, 895, 986, 1452
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 6 cut(s) 35, 813, 1011, 1239, 1362, 1464
Sau3AI GATC 3 cut(s) 552, 744, 1369
Sau96I GGNCC 2 cut(s) 607, 934
ScaI AGTACT 1 cut(s) 987
SchI GAGTC 4 cut(s) 101, 116, 355, 1502
ScrFI CCNGG 2 cut(s) 266, 605
SduI GDGCHC 3 cut(s) 21, 388, 1381
SfaNI GCATC 4 cut(s) 318, 872, 1307, 1407
SfcI CTRYAG 1 cut(s) 1116
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 934
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 5 cut(s) 9, 34, 104, 173, 275
SmoI CTYRAG 5 cut(s) 9, 34, 104, 173, 275
Sse9I AATT 4 cut(s) 580, 615, 753, 814
SsiI CCGC 8 cut(s) 75, 187, 306, 353, 531, 644, 1128, 1147
SspMI CTAG 4 cut(s) 78, 404, 908, 1046
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 264, 603
TaaI ACNGT 4 cut(s) 383, 548, 1090, 1186
TaiI ACGT 3 cut(s) 219, 250, 1329
TaqI TCGA 2 cut(s) 276, 1368
TasI AATT 4 cut(s) 580, 615, 753, 814
TatI WGTACW 2 cut(s) 619, 985
TauI GCSGC 4 cut(s) 309, 533, 647, 1130
TfiI GAWTC 6 cut(s) 56, 62, 506, 1057, 1246, 1335
Tru1I TTAA 6 cut(s) 35, 813, 1011, 1239, 1362, 1464
Tru9I TTAA 6 cut(s) 35, 813, 1011, 1239, 1362, 1464
TscAI CASTG 2 cut(s) 1101, 1180
TseFI GTSAC 3 cut(s) 234, 1084, 1225
TseI GCWGC 9 cut(s) 68, 194, 284, 287, 860, 1016, 1070, 1522, 1525
Tsp45I GTSAC 3 cut(s) 234, 1084, 1225
TspGWI ACGGA 1 cut(s) 1203
TspRI CASTG 2 cut(s) 1101, 1180
Vha464I CTTAAG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 934
XceI RCATGY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 3 cut(s) 543, 687, 768
XspI CTAG 4 cut(s) 78, 404, 908, 1046
ZrmI AGTACT 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.