Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002892

Physical Location & Seq

Genomic Coordinates Forward (+)

2376661 .. 2380792

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTTCTCAAGAAGAGCTCCACCAACCCATCTTAAGCTCCGAACCAGAACCCGAATCCGAATCAGTAGCCTCCGCTAGTCATGGCGAGGAGTCATCTCCACTTGAGAAGGTATTATCCAACGCCCAGTTGCCGTGTTTCAAGAGGTTCCGATTGGCCACATGGATTGAACTCAAGCTCCTCTTCCGCCTTGCTGCTCGCCTGCTCCTGCCGTCTTCGTTTACGTCATCAACAACACTATGTCACTTTCTACACGTGTCTTTGCCGGCCACCTGGGTAATCTCGAGCTTGCAGCTGCCTCCCTCGGCAATAGCGAAATCCAACTCTTTGCCTACGGCCTCATGGTACTTAGGTATGGGAAGTGCGGTGGAGACTCTGTGTGGGCAAGCCTACGGTGCCCACAAGTACGACATCCTTAGCCTTGGCAGCCGCAGTTTTAGTCTACGGTCTAATCCCACAAATCTTCGCTTACGCTGTCAATTTTCCAATCCAAAAGTTTCTCCAGGCCCAGAGAATTGTGCTTCCAAGTGCCTACATATCTGCGGCTACGCTTGCGGTGCATTTATTGCTAAGTTGGGTGGCTGTATACGAGTTAGGTTGGGGGTTGATTGGTGCCTCGTTGGCGTTTTCGGGGTTGTGGGAGTTCGTGAAGTTATCGGCTGCATCGGCTGTGATGTTGTGCTTGGAGGTGTGGTACTTTCAGGTGCTAGTGTTGATTGCTGGCTTACTAAAGACCCTGAGCTTGCTTTGAACTCTTTGGCTGTATGGGATTGGCGTGACATTACATTTTCAACTTATATAGCTAGGAATATACGCGACACTGAATGGTCACAAAAGGACACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

283

Amino Acids

30.6

Weight (kDa)

6.97

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11670 AT1G61890 AT1G61890 AT1G61890
fragaria_vesca	FvH4_3g02260 FvH4_3g02260
malus_domestica	MD05G1344300.v1.1 MD10G1320300.v1.1
prunus_persica	Prupe.4G022000_v2.0.a1 Prupe.4G022000_v2.0.a1 Prupe.4G022000_v2.0.a1 Prupe.4G022000_v2.0.a1 Prupe.4G022000_v2.0.a1 Prupe.4G022100_v2.0.a1 Prupe.4G022100_v2.0.a1
pyrus_communis	pycom05g31370 pycom10g27100
rosa_chinensis	RchiOBHm_Chr5g0003331 RchiOBHm_Chr5g0003381
rosa_laevigata	RLG00000031125 RLG00000031127 RLG00000031131 RLG00000031134
rosa_multiflora	Rmu_sc0006842.1_g000003 Rmu_sc0006842.1_g000010 Rmu_sc0010917.1_g000002 Rmu_sc0010917.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072640
rosa_rugosa	Rorug04G0402900
rosa_samantha	Rh5AG028900 Rh5AG029500 Rh5BG029000 Rh5DG029500
rosa_wichuraiana	Rw0G014030 Rw0G015590 Rw5G002690 Rw5G002740 Rw5G002760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	395, 612
AccI	GTMKAC	2 cut(s)	442, 586
AccII	CGCG	1 cut(s)	816
AciI	CCGC	6 cut(s)	75, 187, 365, 430, 543, 555
AcoI	YGGCCR	2 cut(s)	156, 267
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	3 cut(s)	347, 407, 696
AflII	CTTAAG	1 cut(s)	34
AflIII	ACRYGT	2 cut(s)	253, 255
AgsI	TTSAA	4 cut(s)	142, 170, 751, 792
AjnI	CCWGG	2 cut(s)	272, 502
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	8 cut(s)	19, 39, 178, 288, 295, 742, 803, 846
AluI	AGCT	8 cut(s)	19, 39, 178, 288, 295, 742, 803, 846
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	4 cut(s)	156, 267, 336, 505
ApeKI	GCWGC	5 cut(s)	194, 292, 295, 426, 660
AspS9I	GGNCC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	400
BaeI	ACNNNNGTAYC	2 cut(s)	337, 370
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	395, 612
BanII	GRGCYC	1 cut(s)	21
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	5 cut(s)	181, 282, 304, 438, 647
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	3 cut(s)	118, 196, 351
BciT130I	CCWGG	2 cut(s)	274, 504
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	3 cut(s)	78, 708, 804
BfrI	CTTAAG	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	621
BisI	GCNGC	7 cut(s)	195, 293, 296, 427, 430, 544, 661
BlsI	GCNGC	7 cut(s)	196, 294, 297, 428, 431, 545, 662
Bme1390I	CCNGG	2 cut(s)	274, 504
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	149, 397, 614
BmrFI	CCNGG	2 cut(s)	274, 504
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	416, 738
BpuEI	CTTGAG	2 cut(s)	125, 158
BsaAI	YACGTR	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	273, 303, 421
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 362, 392, 678, 708
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	274, 504
BseDI	CCNNGG	3 cut(s)	273, 303, 421
BseGI	GGATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	104, 170
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	5 cut(s)	181, 282, 304, 438, 647
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	158, 269, 338, 507
BshNI	GGYRCC	2 cut(s)	395, 612
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	158, 269, 338, 507
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	21, 400
BspACI	CCGC	6 cut(s)	75, 187, 365, 430, 543, 555
BspANI	GGCC	4 cut(s)	158, 269, 338, 507
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	3 cut(s)	149, 397, 614
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	2 cut(s)	395, 612
BspTI	CTTAAG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	273, 303, 421
BssNAI	GTATAC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	421
Bst1107I	GTATAC	1 cut(s)	587
Bst2UI	CCWGG	2 cut(s)	274, 504
Bst4CI	ACNGT	2 cut(s)	395, 447
Bst6I	CTCTTC	2 cut(s)	9, 188
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	8 cut(s)	199, 203, 267, 290, 387, 553, 722, 744
BstDEI	CTNAG	4 cut(s)	349, 416, 570, 738
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	816
BstMAI	GTCTC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	7 cut(s)	395, 426, 552, 557, 566, 621, 666
BstNI	CCWGG	2 cut(s)	274, 504
BstSCI	CCNGG	2 cut(s)	272, 502
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	5 cut(s)	181, 282, 304, 438, 647
BstV2I	GAAGAC	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	587
BsuRI	GGCC	4 cut(s)	158, 269, 338, 507
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	8 cut(s)	199, 203, 267, 290, 387, 553, 722, 744
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	346, 406, 695
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	3 cut(s)	83, 162, 342
CviQI	GTAC	3 cut(s)	346, 406, 695
DdeI	CTNAG	4 cut(s)	349, 416, 570, 738
EaeI	YGGCCR	2 cut(s)	156, 267
Eam1104I	CTCTTC	2 cut(s)	9, 188
EarI	CTCTTC	2 cut(s)	9, 188
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	272, 502
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	3 cut(s)	86, 165, 345
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	3 cut(s)	82, 161, 341
FblI	GTMKAC	2 cut(s)	442, 586
Fnu4HI	GCNGC	7 cut(s)	195, 293, 296, 427, 430, 544, 661
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	7 cut(s)	195, 293, 296, 427, 430, 544, 661
FspBI	CTAG	3 cut(s)	78, 708, 804
GluI	GCNGC	7 cut(s)	195, 293, 296, 427, 430, 544, 661
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	158, 269, 338, 507
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	3 cut(s)	86, 165, 345
HinfI	GANTC	4 cut(s)	56, 62, 92, 373
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	222, 443, 587
Hpy188I	TCNGA	3 cut(s)	43, 61, 152
Hpy188III	TCNNGA	4 cut(s)	11, 142, 283, 647
Hpy8I	GTNNAC	3 cut(s)	222, 443, 587
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	395, 447
HpyCH4IV	ACGT	2 cut(s)	224, 255
HpyCH4V	TGCA	3 cut(s)	292, 560, 663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	395, 426, 552, 557, 566, 621, 666
HpyF3I	CTNAG	4 cut(s)	349, 416, 570, 738
HpySE526I	ACGT	2 cut(s)	224, 255
Hsp92II	CATG	3 cut(s)	86, 165, 345
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	24, 44, 183, 210
Lsp1109I	GCAGC	5 cut(s)	181, 282, 304, 438, 647
LweI	GCATC	1 cut(s)	672
MaeI	CTAG	3 cut(s)	78, 708, 804
MaeII	ACGT	2 cut(s)	224, 255
MaeIII	GTNAC	3 cut(s)	242, 776, 828
MboII	GAAGA	4 cut(s)	26, 175, 207, 455
MhlI	GDGCHC	2 cut(s)	21, 400
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	479, 514
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	101, 367
MmeI	TCCRAC	2 cut(s)	144, 345
MnlI	CCTC	9 cut(s)	82, 82, 138, 191, 309, 313, 349, 626, 680
Mox20I	TGGCCA	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	295
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	274, 504
MvaI	CCWGG	2 cut(s)	274, 504
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	7 cut(s)	395, 426, 552, 557, 566, 621, 666
NaeI	GCCGGC	1 cut(s)	267
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	86, 165, 345
NlaIV	GGNNCC	3 cut(s)	149, 397, 614
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	3 cut(s)	242, 776, 828
PaeR7I	CTCGAG	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	56, 62
PkrI	GCNGC	7 cut(s)	196, 294, 297, 428, 431, 545, 662
PleI	GAGTC	2 cut(s)	100, 367
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	2 cut(s)	100, 367
Ppu21I	YACGTR	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	272, 502
PspCI	CACGTG	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	272, 502
PspN4I	GGNNCC	3 cut(s)	149, 397, 614
PspPI	GGNCC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	347, 407, 696
RsaNI	GTAC	3 cut(s)	346, 406, 695
SacI	GAGCTC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	7 cut(s)	195, 293, 296, 427, 430, 544, 661
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	101, 367
ScrFI	CCNGG	2 cut(s)	274, 504
SduI	GDGCHC	2 cut(s)	21, 400
SfaNI	GCATC	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	283
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	5 cut(s)	9, 34, 104, 173, 283
SmoI	CTYRAG	5 cut(s)	9, 34, 104, 173, 283
Sse9I	AATT	2 cut(s)	479, 514
SsiI	CCGC	6 cut(s)	75, 187, 365, 430, 543, 555
SspMI	CTAG	3 cut(s)	78, 708, 804
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	272, 502
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	395, 447
TaiI	ACGT	2 cut(s)	227, 258
TaqI	TCGA	1 cut(s)	284
TasI	AATT	2 cut(s)	479, 514
TauI	GCSGC	2 cut(s)	432, 546
TfiI	GAWTC	2 cut(s)	56, 62
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	3 cut(s)	242, 776, 828
TseI	GCWGC	5 cut(s)	194, 292, 295, 426, 660
Tsp45I	GTSAC	3 cut(s)	242, 776, 828
TspRI	CASTG	1 cut(s)	826
Vha464I	CTTAAG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	283
XmiI	GTMKAC	2 cut(s)	442, 586
XspI	CTAG	3 cut(s)	78, 708, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.