Rmu_sc0006842.1_g000003

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006842.1
Physical Location & Seq
Forward (+)
14021 .. 17877
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006842.1_g000003.1.cds

Sequence Viewer

Length: 1548 bp
atgggttctcaagaagagctccaccaacccatcttaaactccgaaccagaacccgaatccgaatcagtagcctacgctagtcatggcgaggagtcatctccacttgagaaggtactatccgacactcagttgccgtgtttcaagaggctccgattggccacatggattgaactcaagctcctcttccgccttgctgctcctgccgtcttcgtttacgtcatcaacaacactatgtcactttctacacgtgtcttcgccggccacctgggtaatctcgagcttgcagctgcctccctcggcaatagcggcatccaactctttgcctacggcctcatgttaggtatggggagcgcggtggagactctatgtgggcaagcctacggtgcccacaggtacgacatgttaggcatatatctccaaagagcaaccatagtcctaaccatcaccggacttccacttcttgcagtcttcatcctatgcaagcccttattgcttttaatcggagaatcatcagccttagcctctgcagccgcagttttcgtctacggtctgatcccacaaatcttcgcctacgctgtcaattttccaatccaaaagtttctccaggcccagagaattgtgcttccaagtgcctacatatctggggctacgcttggggtgcatttattgctaagttgggtggctgtatacgagttaggttgggggttgattggtgcctcgttggttttgagcttgtcttggtggatcattgtaatcgctcagttcgtctacattttgacaagtagaaaatgtaagcagacatggagtgggtttagtttgcaggcgttttcggggttgtgggagttcgtgaagttatcggctgcatcggctgtgatgttgtgcttggaggtgtggtactttcaggtgctagtgttgattgctggcttactaaaggaccctgagcttgctttgaactctttggctgtatgcatggcgataaatggagtactgttcatggtttcagttggatttaacgcagctataagtgtgcgagtaagcaatgagctaggagctgggaatccaaagtcggcagcattctcggttgtgatagtaacactggtgtcgttggctattgctatagttgaagccgtcattgtgctgtcgctccgcgatgtaatcagttacgcctttaccagtggcgaaactgttgccgaagccgtctctaaactcactccgtatttggccgtcactctaatccttaatgggattcaacctgtcctctcgggggtggctgttgggtgtggatggcaagcctttgtggcatatgtgaatgtgggatgctactatgtggttggaatcccattaggctgtcttctgggatttaagttcgatcttggtgctcagggaatatggtcggggatgataggaggaacattgatgcagaccatcatcttattgtgggtaacatttcgtacggactggattaaagaggtggacacgagtaaaaagcgtttggaaaaatgggatgactctaataaacagcagcagcaacctcttctcaaaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

55.68

Weight (kDa)

6.25

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 383, 713
AccI GTMKAC 3 cut(s) 543, 687, 768
AccII CGCG 2 cut(s) 353, 1149
AciI CCGC 5 cut(s) 187, 306, 353, 531, 1147
AclWI GGATC 2 cut(s) 547, 752
AcoI YGGCCR 3 cut(s) 156, 259, 1221
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 5 cut(s) 114, 395, 896, 987, 1453
AfiI CCNNNNNNNGG 1 cut(s) 1264
AflIII ACRYGT 3 cut(s) 245, 247, 399
AgsI TTSAA 5 cut(s) 142, 170, 952, 1124, 1250
AjnI CCWGG 2 cut(s) 264, 603
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 9 cut(s) 19, 178, 280, 287, 732, 943, 1019, 1045, 1052
AluI AGCT 9 cut(s) 19, 178, 280, 287, 732, 943, 1019, 1045, 1052
Alw21I GWGCWC 2 cut(s) 21, 1381
Alw26I GTCTC 2 cut(s) 353, 1204
AlwI GGATC 2 cut(s) 547, 752
Ama87I CYCGRG 2 cut(s) 275, 1261
AoxI GGCC 5 cut(s) 156, 259, 328, 606, 1221
ApeKI GCWGC 9 cut(s) 194, 284, 287, 527, 860, 1016, 1070, 1522, 1525
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 607, 934
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 2 cut(s) 275, 1261
AvaII GGWCC 1 cut(s) 934
BaeGI GKGCMC 1 cut(s) 388
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 383, 713
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 1477
BbrPI CACGTG 1 cut(s) 248
BbsI GAAGAC 4 cut(s) 199, 244, 460, 1343
Bbv12I GWGCWC 2 cut(s) 21, 1381
BbvI GCAGC 9 cut(s) 181, 274, 296, 539, 847, 1028, 1082, 1534, 1537
BccI CCATC 4 cut(s) 38, 449, 1278, 1433
BceAI ACGGC 6 cut(s) 118, 188, 343, 1112, 1181, 1208
BcgI CGANNNNNNTGC 6 cut(s) 1059, 1093, 1169, 1203, 1358, 1392
BciT130I CCWGG 2 cut(s) 266, 605
BcoDI GTCTC 2 cut(s) 353, 1204
BfaI CTAG 3 cut(s) 78, 908, 1046
BfmI CTRYAG 2 cut(s) 525, 1116
BglI GCCNNNNNGGC 1 cut(s) 1298
BmcAI AGTACT 1 cut(s) 987
Bme1390I CCNGG 2 cut(s) 266, 605
Bme18I GGWCC 1 cut(s) 934
BmeT110I CYCGRG 2 cut(s) 275, 1261
BmgT120I GGNCC 2 cut(s) 607, 934
BmiI GGNNCC 4 cut(s) 149, 385, 715, 936
BmrFI CCNGG 2 cut(s) 266, 605
BmsI GCATC 4 cut(s) 318, 872, 1307, 1407
BpiI GAAGAC 4 cut(s) 199, 244, 460, 1343
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 3 cut(s) 517, 939, 1380
BpuEI CTTGAG 2 cut(s) 125, 158
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 265, 295
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 4 cut(s) 162, 192, 878, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 1101, 1173, 1463
Bse3DI GCAATG 1 cut(s) 1045
BseBI CCWGG 2 cut(s) 266, 605
BseDI CCNNGG 2 cut(s) 265, 295
BseGI GGATG 6 cut(s) 309, 471, 1289, 1322, 1404, 1510
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMI GCAATG 1 cut(s) 1045
BseMII CTCAG 4 cut(s) 140, 773, 930, 1394
BseNI ACTGG 3 cut(s) 1101, 1173, 1463
BseRI GAGGAG 2 cut(s) 104, 170
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 9 cut(s) 181, 274, 296, 539, 847, 1028, 1082, 1534, 1537
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 2 cut(s) 353, 1149
BshFI GGCC 5 cut(s) 158, 261, 330, 608, 1223
BshNI GGYRCC 2 cut(s) 383, 713
BsiHKAI GWGCWC 2 cut(s) 21, 1381
BsiHKCI CYCGRG 2 cut(s) 275, 1261
BsiSI CCGG 2 cut(s) 258, 447
BsiWI CGTACG 1 cut(s) 1451
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 2 cut(s) 353, 1204
BsmBI CGTCTC 1 cut(s) 1204
BsmI GAATGC 1 cut(s) 1073
BsnI GGCC 5 cut(s) 158, 261, 330, 608, 1223
BsoBI CYCGRG 2 cut(s) 275, 1261
Bsp1286I GDGCHC 3 cut(s) 21, 388, 1381
Bsp143I GATC 3 cut(s) 552, 744, 1369
BspACI CCGC 5 cut(s) 187, 306, 353, 531, 1147
BspANI GGCC 5 cut(s) 158, 261, 330, 608, 1223
BspCNI CTCAG 4 cut(s) 139, 772, 931, 1393
BspFNI CGCG 2 cut(s) 353, 1149
BspLI GGNNCC 4 cut(s) 149, 385, 715, 936
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 2 cut(s) 547, 752
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 2 cut(s) 383, 713
BsrDI GCAATG 1 cut(s) 1045
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 3 cut(s) 1101, 1173, 1463
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 265, 295
BssMI GATC 3 cut(s) 552, 744, 1369
BssNAI GTATAC 1 cut(s) 688
BssSI CACGAG 1 cut(s) 1477
Bst1107I GTATAC 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 1477
Bst2UI CCWGG 2 cut(s) 266, 605
Bst4CI ACNGT 4 cut(s) 383, 548, 990, 1186
Bst6I CTCTTC 3 cut(s) 9, 188, 1539
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 8 cut(s) 259, 282, 375, 482, 822, 922, 945, 1290
BstDEI CTNAG 6 cut(s) 126, 517, 671, 759, 939, 1380
BstF5I GGATG 6 cut(s) 309, 471, 1289, 1322, 1404, 1510
BstFNI CGCG 2 cut(s) 353, 1149
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 3 cut(s) 555, 747, 1372
BstMAI GTCTC 2 cut(s) 353, 1204
BstMBI GATC 3 cut(s) 552, 744, 1369
BstMWI GCNNNNNNNGC 9 cut(s) 200, 306, 383, 490, 527, 658, 667, 866, 1298
BstNI CCWGG 2 cut(s) 266, 605
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 264, 603
BstSFI CTRYAG 2 cut(s) 525, 1116
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 353, 1149
BstV1I GCAGC 9 cut(s) 181, 274, 296, 539, 847, 1028, 1082, 1534, 1537
BstV2I GAAGAC 4 cut(s) 199, 244, 460, 1343
BstZ17I GTATAC 1 cut(s) 688
BsuRI GGCC 5 cut(s) 158, 261, 330, 608, 1223
BtgZI GCGATG 1 cut(s) 1164
BtsCI GGATG 6 cut(s) 309, 471, 1289, 1322, 1404, 1510
BtsIMutI CAGTG 2 cut(s) 1094, 1180
Cac8I GCNNGC 8 cut(s) 259, 282, 375, 482, 822, 922, 945, 1290
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 607, 934
Csp6I GTAC 5 cut(s) 113, 394, 895, 986, 1452
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 7 cut(s) 83, 162, 334, 400, 801, 970, 994
CviQI GTAC 5 cut(s) 113, 394, 895, 986, 1452
DdeI CTNAG 6 cut(s) 126, 517, 671, 759, 939, 1380
DpnI GATC 3 cut(s) 554, 746, 1371
DpnII GATC 3 cut(s) 552, 744, 1369
EaeI YGGCCR 3 cut(s) 156, 259, 1221
Eam1104I CTCTTC 3 cut(s) 9, 188, 1539
EarI CTCTTC 3 cut(s) 9, 188, 1539
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 934
Eco53kI GAGCTC 1 cut(s) 19
Eco72I CACGTG 1 cut(s) 248
Eco88I CYCGRG 2 cut(s) 275, 1261
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 2 cut(s) 264, 603
EcoT22I ATGCAT 1 cut(s) 971
EcoT38I GRGCYC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 1204
FaeI CATG 7 cut(s) 86, 165, 337, 403, 804, 973, 997
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 7 cut(s) 82, 161, 333, 399, 800, 969, 993
FauNDI CATATG 1 cut(s) 1303
FblI GTMKAC 3 cut(s) 543, 687, 768
FokI GGATG 6 cut(s) 296, 458, 1296, 1329, 1411, 1517
FriOI GRGCYC 1 cut(s) 21
FspBI CTAG 3 cut(s) 78, 908, 1046
GlaI GCGC 1 cut(s) 352
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 5 cut(s) 158, 261, 330, 608, 1223
HapII CCGG 2 cut(s) 258, 447
HhaI GCGC 1 cut(s) 353
Hin1II CATG 7 cut(s) 86, 165, 337, 403, 804, 973, 997
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 9 cut(s) 56, 62, 92, 361, 506, 1057, 1246, 1335, 1508
HpaII CCGG 2 cut(s) 258, 447
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 5 cut(s) 214, 544, 688, 769, 1474
Hpy188I TCNGA 6 cut(s) 43, 61, 121, 152, 503, 552
Hpy188III TCNNGA 4 cut(s) 11, 142, 275, 847
Hpy8I GTNNAC 5 cut(s) 214, 544, 688, 769, 1474
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 4 cut(s) 383, 548, 990, 1186
HpyCH4IV ACGT 2 cut(s) 216, 247
HpyCH4V TGCA 9 cut(s) 284, 464, 480, 527, 661, 820, 863, 969, 1420
HpyF10VI GCNNNNNNNGC 9 cut(s) 200, 306, 383, 490, 527, 658, 667, 866, 1298
HpyF3I CTNAG 6 cut(s) 126, 517, 671, 759, 939, 1380
HpySE526I ACGT 2 cut(s) 216, 247
Hsp92II CATG 7 cut(s) 86, 165, 337, 403, 804, 973, 997
HspAI GCGC 1 cut(s) 351
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 552, 744, 1369
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 7 cut(s) 24, 153, 183, 202, 348, 1049, 1149
Lsp1109I GCAGC 9 cut(s) 181, 274, 296, 539, 847, 1028, 1082, 1534, 1537
LweI GCATC 4 cut(s) 318, 872, 1307, 1407
MaeI CTAG 3 cut(s) 78, 908, 1046
MaeII ACGT 2 cut(s) 216, 247
MaeIII GTNAC 5 cut(s) 234, 1090, 1160, 1225, 1441
MalI GATC 3 cut(s) 554, 746, 1371
MboI GATC 3 cut(s) 552, 744, 1369
MboII GAAGA 8 cut(s) 26, 175, 199, 244, 460, 556, 1343, 1526
MhlI GDGCHC 3 cut(s) 21, 388, 1381
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 580, 615
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 3 cut(s) 101, 355, 1502
MmeI TCCRAC 4 cut(s) 144, 337, 985, 1312
Mox20I TGGCCA 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 971
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 158
MseI TTAA 6 cut(s) 35, 497, 1011, 1239, 1362, 1464
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 258, 447
MspR9I CCNGG 2 cut(s) 266, 605
Mva1269I GAATGC 1 cut(s) 1073
MvaI CCWGG 2 cut(s) 266, 605
MvnI CGCG 2 cut(s) 353, 1149
MwoI GCNNNNNNNGC 9 cut(s) 200, 306, 383, 490, 527, 658, 667, 866, 1298
NaeI GCCGGC 1 cut(s) 259
NdeI CATATG 1 cut(s) 1303
NdeII GATC 3 cut(s) 552, 744, 1369
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 7 cut(s) 86, 165, 337, 403, 804, 973, 997
NlaIV GGNNCC 4 cut(s) 149, 385, 715, 936
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 234, 1225
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 275
PciI ACATGT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 1073
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 6 cut(s) 56, 62, 506, 1057, 1246, 1335
Pfl23II CGTACG 1 cut(s) 1451
PleI GAGTC 3 cut(s) 100, 355, 1502
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 3 cut(s) 100, 355, 1502
Ppu21I YACGTR 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 934
PscI ACATGT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 2 cut(s) 264, 603
PspCI CACGTG 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 264, 603
PspLI CGTACG 1 cut(s) 1451
PspN4I GGNNCC 4 cut(s) 149, 385, 715, 936
PspPI GGNCC 2 cut(s) 607, 934
PspPPI RGGWCCY 1 cut(s) 934
PstI CTGCAG 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 5 cut(s) 114, 395, 896, 987, 1453
RsaNI GTAC 5 cut(s) 113, 394, 895, 986, 1452
SacI GAGCTC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 6 cut(s) 35, 497, 1011, 1239, 1362, 1464
Sau3AI GATC 3 cut(s) 552, 744, 1369
Sau96I GGNCC 2 cut(s) 607, 934
ScaI AGTACT 1 cut(s) 987
SchI GAGTC 3 cut(s) 101, 355, 1502
ScrFI CCNGG 2 cut(s) 266, 605
SduI GDGCHC 3 cut(s) 21, 388, 1381
SfaNI GCATC 4 cut(s) 318, 872, 1307, 1407
SfcI CTRYAG 2 cut(s) 525, 1116
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 934
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 4 cut(s) 9, 104, 173, 275
SmoI CTYRAG 4 cut(s) 9, 104, 173, 275
Sse9I AATT 2 cut(s) 580, 615
SsiI CCGC 5 cut(s) 187, 306, 353, 531, 1147
SspMI CTAG 3 cut(s) 78, 908, 1046
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 264, 603
TaaI ACNGT 4 cut(s) 383, 548, 990, 1186
TaiI ACGT 2 cut(s) 219, 250
TaqI TCGA 2 cut(s) 276, 1368
TasI AATT 2 cut(s) 580, 615
TatI WGTACW 1 cut(s) 985
TauI GCSGC 2 cut(s) 309, 533
TfiI GAWTC 6 cut(s) 56, 62, 506, 1057, 1246, 1335
Tru1I TTAA 6 cut(s) 35, 497, 1011, 1239, 1362, 1464
Tru9I TTAA 6 cut(s) 35, 497, 1011, 1239, 1362, 1464
TscAI CASTG 2 cut(s) 1101, 1180
TseFI GTSAC 2 cut(s) 234, 1225
TseI GCWGC 9 cut(s) 194, 284, 287, 527, 860, 1016, 1070, 1522, 1525
Tsp45I GTSAC 2 cut(s) 234, 1225
TspDTI ATGAA 2 cut(s) 460, 982
TspGWI ACGGA 2 cut(s) 1203, 1469
TspRI CASTG 2 cut(s) 1101, 1180
VpaK11BI GGWCC 1 cut(s) 934
XceI RCATGY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 3 cut(s) 543, 687, 768
XspI CTAG 3 cut(s) 78, 908, 1046
ZrmI AGTACT 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.