pycom05g31370

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
31118139 .. 31123856
5718 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31370.1

Sequence Viewer

Length: 1464 bp
ATGCATCGAACTGTGGCACACTTCTGCCACACACCCCACCACCTTTTTGGTCCAAAAATGAGCTCTCAACACCCACTGCACCAACCCATCTTACACTCCGAACCTGAACCGGCAGCACAAGCCTCCAGAGATGGAGAAGGTGTGGACTTTCTACTCGAGAAGGTGCTATCCGACACCCAATTGCCCTCGTTCAAGCGATTCCGCTTGGCCACATGGATTGAACTCAAGCTCCTCTTTCGTCTTGCTGCTCCCGCAATCTTGGTTTATGTCATTAACAACTCCATGTCACTTTCCGCTCGTGTCTTTGCCGGCCACCTCGGCAATCTTGAGCTCGCCGCCGCCTCTCTTGGCAACAACGGCATCCAACTCTTGGCTTATGGCCTCATGCTAGGCATGGGAAGTGCAGTGGAGACTCTATGCGGGCAAGCCTACGGTGCCCAGAAATATGACATGTTAAGCATATACCTTCAAAGAGCAACCATAGTCCTATCTCTCACTGGCCTCCCACTTCTGGCAATCTTTCTTCTCTCAAAACCCATGTTGCTTTTACTCGGCGAACCGCCCGCCGTGGCCTCAGCCGCCGCCGTATTTGTCTACGGTCTAATCCCTCAAATATTTGCCTACGCCGTCAACTTCCCCATTCAAAAGTTTCTCCAAGCACAACGAATTGTGGCCCCGAGTGCTTACATATCAGCAGCTACTTTAGGAGTGCATTTGTTGCTGAGCTGGGTTGCTGTGTACAAGCTGGGTTTAGGGTTGATAGGTGCGTCTCTTGTTTTGAGCTTGTCGTGGTGGATCATAGTTGGGGCCCAGATTGTTTACATCTTGGTGAGTAGTCAGTGTAAGCTAACTTGGAATGGTTTTAGTTTGCAAGCCTTTTCTGGGTTGTGGGATTTTTTCAAGCTATCGGCTGCATCGGCGGTGATGTTGTGCTTGGAGTGTTGGTATTTTCAGGTGCTAGTTTTGATTGCTGGGTTGCTCAAGAACCCCGAGCTTGCCCTAAATTCTTTGGCTGTATGCATGTCGATAAGTGGAGTGTTGTTCATGGTTTCAGCCGGGTTCAATGCAGCTGCAAGTGTGAGGGTGAGCAATGAGCTAGGTGCTGGGAATCCAAAGTCAGCAGCATTCTCGGTTCTAGTAGTAACTTTGGTATCCTTAACTTTTTCTGTTGTGGAAGCTGTGATTGTGCTCTCCCTCCGTGACGTAATCAGTTATGCCTTCACTAGCGGTGAAACTGTGGCAAAGGCAGTCTCGCACCTAACTCCATATTTGGCCGTCACTCTCATCCTCAACGGGATTCAACCAGTACTATCCGGGGTGGCTGTTGGATGTGGGTGGCAAGCATTTGTGGCATATGTGAATGTGGGATGCTATTACGTGGTTGGAATTCCATTCGGCTGCATTCTTGGGTTTAGATTCGACCTTGGCGCTGAGGTACAGTTACCAACTCAATTATCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

52.14

Weight (kDa)

8.31

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 84 - 244 3.5e-34 MatE
MatE PF01554 306 - 467 2.9e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 594
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 3 cut(s) 207, 310, 1272
AcsI RAATTY 2 cut(s) 1003, 1386
AfaI GTAC 3 cut(s) 740, 1308, 1437
AfiI CCNNNNNNNGG 3 cut(s) 370, 511, 882
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 7 cut(s) 193, 221, 470, 644, 901, 1063, 1301
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
Alw21I GWGCWC 3 cut(s) 65, 333, 1191
Alw26I GTCTC 3 cut(s) 404, 774, 1255
AlwI GGATC 1 cut(s) 803
Ama87I CYCGRG 3 cut(s) 155, 676, 989
AoxI GGCC 8 cut(s) 207, 310, 379, 499, 570, 672, 807, 1272
ApaI GGGCCC 1 cut(s) 811
ApeKI GCWGC 8 cut(s) 113, 245, 695, 911, 1067, 1070, 1121, 1398
ApoI RAATTY 2 cut(s) 1003, 1386
AspLEI GCGC 1 cut(s) 1430
AspS9I GGNCC 4 cut(s) 50, 673, 807, 808
AsuC2I CCSGG 2 cut(s) 1057, 1315
AsuHPI GGTGA 4 cut(s) 841, 934, 1096, 1241
AvaI CYCGRG 3 cut(s) 155, 676, 989
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 2 cut(s) 439, 811
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 3 cut(s) 65, 333, 811
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 3 cut(s) 65, 333, 1191
BbvCI CCTCAGC 2 cut(s) 574, 1431
BbvI GCAGC 8 cut(s) 125, 232, 707, 898, 1057, 1079, 1133, 1385
BccI CCATC 2 cut(s) 95, 125
BceAI ACGGC 5 cut(s) 373, 551, 569, 611, 1259
BcgI CGANNNNNNTGC 2 cut(s) 1110, 1144
BciVI GTATCC 1 cut(s) 1162
BcnI CCSGG 2 cut(s) 1057, 1315
BcoDI GTCTC 3 cut(s) 404, 774, 1255
BfaI CTAG 5 cut(s) 389, 959, 1097, 1136, 1224
BfoI RGCGCY 1 cut(s) 1431
BfuI GTATCC 1 cut(s) 1162
BglI GCCNNNNNGGC 1 cut(s) 318
BlpI GCTNAGC 1 cut(s) 722
BmcAI AGTACT 1 cut(s) 1308
Bme1390I CCNGG 2 cut(s) 1057, 1315
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 3 cut(s) 155, 676, 989
BmgT120I GGNCC 4 cut(s) 50, 673, 807, 808
BmiI GGNNCC 4 cut(s) 436, 675, 808, 809
BmrFI CCNGG 2 cut(s) 1057, 1315
BmsI GCATC 4 cut(s) 13, 369, 923, 1358
BpmI CTGGAG 1 cut(s) 109
Bpu10I CCTNAGC 2 cut(s) 574, 1431
Bpu1102I GCTNAGC 1 cut(s) 722
BpuEI CTTGAG 3 cut(s) 209, 347, 965
BpuMI CCSGG 2 cut(s) 1057, 1315
BsaAI YACGTR 1 cut(s) 1378
BsaJI CCNNGG 4 cut(s) 316, 567, 1314, 1423
BsaXI ACNNNNNCTCC 6 cut(s) 126, 156, 213, 243, 929, 959
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 511, 882
Bse118I RCCGGY 2 cut(s) 109, 308
Bse1I ACTGG 2 cut(s) 502, 1304
Bse3DI GCAATG 1 cut(s) 1096
BseDI CCNNGG 4 cut(s) 316, 567, 1314, 1423
BseGI GGATG 4 cut(s) 360, 1284, 1334, 1373
BseLI CCNNNNNNNGG 3 cut(s) 370, 511, 882
BseMI GCAATG 1 cut(s) 1096
BseMII CTCAG 3 cut(s) 588, 713, 1422
BseNI ACTGG 2 cut(s) 502, 1304
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 439, 811
BseXI GCAGC 8 cut(s) 125, 232, 707, 898, 1057, 1079, 1133, 1385
BseYI CCCAGC 4 cut(s) 726, 745, 971, 1103
BsgI GTGCAG 2 cut(s) 62, 423
BshFI GGCC 8 cut(s) 209, 312, 381, 501, 572, 674, 809, 1274
BshNI GGYRCC 1 cut(s) 434
BsiHKAI GWGCWC 3 cut(s) 65, 333, 1191
BsiHKCI CYCGRG 3 cut(s) 155, 676, 989
BsiSI CCGG 4 cut(s) 110, 309, 1056, 1314
BslI CCNNNNNNNGG 3 cut(s) 370, 511, 882
BsmAI GTCTC 3 cut(s) 404, 774, 1255
BsmBI CGTCTC 1 cut(s) 774
BsmI GAATGC 2 cut(s) 1124, 1401
BsnI GGCC 8 cut(s) 209, 312, 381, 501, 572, 674, 809, 1274
BsoBI CYCGRG 3 cut(s) 155, 676, 989
Bsp120I GGGCCC 1 cut(s) 807
Bsp1286I GDGCHC 5 cut(s) 65, 333, 439, 811, 1191
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 1 cut(s) 795
Bsp1720I GCTNAGC 1 cut(s) 722
BspANI GGCC 8 cut(s) 209, 312, 381, 501, 572, 674, 809, 1274
BspCNI CTCAG 3 cut(s) 587, 714, 1423
BspLI GGNNCC 4 cut(s) 436, 675, 808, 809
BspPI GGATC 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 1096
BsrFI RCCGGY 2 cut(s) 109, 308
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 2 cut(s) 502, 1304
BssAI RCCGGY 2 cut(s) 109, 308
BssECI CCNNGG 4 cut(s) 316, 567, 1314, 1423
BssMI GATC 1 cut(s) 795
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 1423
Bst2BI CACGAG 1 cut(s) 297
Bst4CI ACNGT 5 cut(s) 13, 434, 599, 1237, 1440
BstAPI GCANNNNNTGC 1 cut(s) 718
BstAUI TGTACA 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 1378
BstC8I GCNNGC 8 cut(s) 310, 333, 422, 426, 564, 873, 996, 1341
BstDEI CTNAG 3 cut(s) 574, 722, 1431
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 4 cut(s) 360, 1284, 1334, 1373
BstH2I RGCGCY 1 cut(s) 1431
BstHHI GCGC 1 cut(s) 1430
BstKTI GATC 1 cut(s) 798
BstMAI GTCTC 3 cut(s) 404, 774, 1255
BstMBI GATC 1 cut(s) 795
BstNSI RCATGY 2 cut(s) 454, 1024
BstSCI CCNGG 2 cut(s) 1055, 1313
BstSLI GKGCMC 2 cut(s) 439, 811
BstV1I GCAGC 8 cut(s) 125, 232, 707, 898, 1057, 1079, 1133, 1385
BstXI CCANNNNNNTGG 1 cut(s) 47
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 8 cut(s) 209, 312, 381, 501, 572, 674, 809, 1274
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 4 cut(s) 360, 1284, 1334, 1373
BtsI GCAGTG 2 cut(s) 74, 411
BtsIMutI CAGTG 4 cut(s) 74, 411, 495, 845
Cac8I GCNNGC 8 cut(s) 310, 333, 422, 426, 564, 873, 996, 1341
CfoI GCGC 1 cut(s) 1430
Cfr10I RCCGGY 2 cut(s) 109, 308
Cfr13I GGNCC 4 cut(s) 50, 673, 807, 808
CseI GACGC 1 cut(s) 756
Csp6I GTAC 3 cut(s) 739, 1307, 1436
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 8 cut(s) 213, 283, 385, 394, 451, 538, 1021, 1045
CviQI GTAC 3 cut(s) 739, 1307, 1436
DdeI CTNAG 3 cut(s) 574, 722, 1431
DpnI GATC 1 cut(s) 797
DpnII GATC 1 cut(s) 795
EaeI YGGCCR 3 cut(s) 207, 310, 1272
Ecl136II GAGCTC 2 cut(s) 63, 331
Eco130I CCWWGG 1 cut(s) 1423
Eco24I GRGCYC 3 cut(s) 65, 333, 811
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 63, 331
Eco88I CYCGRG 3 cut(s) 155, 676, 989
EcoICRI GAGCTC 2 cut(s) 63, 331
EcoO109I RGGNCCY 1 cut(s) 807
EcoRI GAATTC 1 cut(s) 1386
EcoT14I CCWWGG 1 cut(s) 1423
EcoT22I ATGCAT 2 cut(s) 6, 1022
EcoT38I GRGCYC 3 cut(s) 65, 333, 811
ErhI CCWWGG 1 cut(s) 1423
Esp3I CGTCTC 1 cut(s) 774
FaeI CATG 8 cut(s) 216, 286, 388, 397, 454, 541, 1024, 1048
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 8 cut(s) 212, 282, 384, 393, 450, 537, 1020, 1044
FauI CCCGC 3 cut(s) 259, 413, 571
FauNDI CATATG 1 cut(s) 1354
FblI GTMKAC 1 cut(s) 594
FokI GGATG 4 cut(s) 347, 1271, 1341, 1380
FriOI GRGCYC 3 cut(s) 65, 333, 811
FspBI CTAG 5 cut(s) 389, 959, 1097, 1136, 1224
GlaI GCGC 1 cut(s) 1429
GsaI CCCAGC 4 cut(s) 730, 749, 975, 1107
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 1431
HaeIII GGCC 8 cut(s) 209, 312, 381, 501, 572, 674, 809, 1274
HapII CCGG 4 cut(s) 110, 309, 1056, 1314
HgaI GACGC 1 cut(s) 756
HhaI GCGC 1 cut(s) 1430
Hin1II CATG 8 cut(s) 216, 286, 388, 397, 454, 541, 1024, 1048
Hin6I GCGC 1 cut(s) 1428
HinP1I GCGC 1 cut(s) 1428
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 5 cut(s) 198, 412, 1108, 1297, 1416
HpaII CCGG 4 cut(s) 110, 309, 1056, 1314
HphI GGTGA 4 cut(s) 841, 934, 1096, 1241
Hpy166II GTNNAC 5 cut(s) 145, 595, 631, 739, 820
Hpy188I TCNGA 2 cut(s) 100, 172
Hpy188III TCNNGA 4 cut(s) 126, 157, 326, 982
Hpy8I GTNNAC 5 cut(s) 145, 595, 631, 739, 820
HpyAV CCTTC 4 cut(s) 131, 154, 476, 1228
HpyCH4III ACNGT 5 cut(s) 13, 434, 599, 1237, 1440
HpyCH4IV ACGT 2 cut(s) 1203, 1377
HpyF3I CTNAG 3 cut(s) 574, 722, 1431
HpySE526I ACGT 2 cut(s) 1203, 1377
Hsp92II CATG 8 cut(s) 216, 286, 388, 397, 454, 541, 1024, 1048
HspAI GCGC 1 cut(s) 1428
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 234, 253
Lsp1109I GCAGC 8 cut(s) 125, 232, 707, 898, 1057, 1079, 1133, 1385
LweI GCATC 4 cut(s) 13, 369, 923, 1358
MaeI CTAG 5 cut(s) 389, 959, 1097, 1136, 1224
MaeII ACGT 2 cut(s) 1203, 1377
MaeIII GTNAC 5 cut(s) 285, 1141, 1199, 1276, 1440
MalI GATC 1 cut(s) 797
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 795
MboII GAAGA 1 cut(s) 515
MfeI CAATTG 1 cut(s) 179
MhlI GDGCHC 5 cut(s) 65, 333, 439, 811, 1191
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 5 cut(s) 179, 666, 1003, 1386, 1451
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 4 cut(s) 195, 388, 1306, 1363
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 2 cut(s) 6, 1022
MroNI GCCGGC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 273, 455, 1157
MslI CAYNNNNRTG 1 cut(s) 827
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 1070
MspI CCGG 4 cut(s) 110, 309, 1056, 1314
MspR9I CCNGG 2 cut(s) 1057, 1315
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 1124, 1401
NaeI GCCGGC 1 cut(s) 310
NciI CCSGG 2 cut(s) 1057, 1315
NdeI CATATG 1 cut(s) 1354
NdeII GATC 1 cut(s) 795
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 8 cut(s) 216, 286, 388, 397, 454, 541, 1024, 1048
NlaIV GGNNCC 4 cut(s) 436, 675, 808, 809
NmeAIII GCCGAG 2 cut(s) 297, 531
NmuCI GTSAC 3 cut(s) 285, 1199, 1276
NsiI ATGCAT 2 cut(s) 6, 1022
NspI RCATGY 2 cut(s) 454, 1024
PaeR7I CTCGAG 1 cut(s) 155
PciI ACATGT 1 cut(s) 450
PctI GAATGC 2 cut(s) 1124, 1401
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 4 cut(s) 198, 1108, 1297, 1416
PflMI CCANNNNNTGG 1 cut(s) 370
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 1378
PscI ACATGT 1 cut(s) 450
Psp124BI GAGCTC 2 cut(s) 65, 333
PspFI CCCAGC 4 cut(s) 726, 745, 971, 1103
PspN4I GGNNCC 4 cut(s) 436, 675, 808, 809
PspOMI GGGCCC 1 cut(s) 807
PspPI GGNCC 4 cut(s) 50, 673, 807, 808
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 3 cut(s) 740, 1308, 1437
RsaNI GTAC 3 cut(s) 739, 1307, 1436
RseI CAYNNNNRTG 1 cut(s) 827
SacI GAGCTC 2 cut(s) 65, 333
SaqAI TTAA 3 cut(s) 273, 455, 1157
Sau3AI GATC 1 cut(s) 795
Sau96I GGNCC 4 cut(s) 50, 673, 807, 808
ScaI AGTACT 1 cut(s) 1308
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 1057, 1315
SduI GDGCHC 5 cut(s) 65, 333, 439, 811, 1191
SfaNI GCATC 4 cut(s) 13, 369, 923, 1358
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 827
SmlI CTYRAG 4 cut(s) 155, 224, 326, 980
SmoI CTYRAG 4 cut(s) 155, 224, 326, 980
Sse9I AATT 5 cut(s) 179, 666, 1003, 1386, 1451
SspI AATATT 1 cut(s) 615
SspMI CTAG 5 cut(s) 389, 959, 1097, 1136, 1224
SstI GAGCTC 2 cut(s) 65, 333
StyD4I CCNGG 2 cut(s) 1055, 1313
StyI CCWWGG 1 cut(s) 1423
TaaI ACNGT 5 cut(s) 13, 434, 599, 1237, 1440
TaiI ACGT 2 cut(s) 1206, 1380
TaqI TCGA 4 cut(s) 7, 156, 1025, 1419
TasI AATT 5 cut(s) 179, 666, 1003, 1386, 1451
TatI WGTACW 2 cut(s) 738, 1306
TauI GCSGC 4 cut(s) 338, 341, 581, 584
TfiI GAWTC 4 cut(s) 198, 1108, 1297, 1416
Tru1I TTAA 3 cut(s) 273, 455, 1157
Tru9I TTAA 3 cut(s) 273, 455, 1157
TscAI CASTG 4 cut(s) 81, 411, 502, 845
TseFI GTSAC 3 cut(s) 285, 1199, 1276
TseI GCWGC 8 cut(s) 113, 245, 695, 911, 1067, 1070, 1121, 1398
Tsp45I GTSAC 3 cut(s) 285, 1199, 1276
TspDTI ATGAA 1 cut(s) 1033
TspGWI ACGGA 1 cut(s) 1187
TspRI CASTG 4 cut(s) 81, 411, 502, 845
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 1003, 1386
XceI RCATGY 2 cut(s) 454, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 5 cut(s) 389, 959, 1097, 1136, 1224
ZrmI AGTACT 1 cut(s) 1308
Zsp2I ATGCAT 2 cut(s) 6, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.