Rw5G002690

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
2549298 .. 2552848
3551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002690.1

Sequence Viewer

Length: 1419 bp
ATGGCGAGGAGTCATCTCCACTTGAGAAGGTACTATCCGACACTCAGTTGCCGTGTTTCAAGAGGCTCCGATTGGCCACATGGATTGAACTCAAGCTCCTCTTCCGCCCTTTCTACACGTGTCTTCGCCGGCCACCTGGGTAATCTCGAGCTTGCAGCTGCCTCCCTCGGCAATAGCGGCATCCAACTCTTTGCCTACGGCCTCATGTTAGGTATGGGGAGCGCGGTGGAGACTCTATGTGGGCAAGCCTACGGTGCCCACAGGTACGACATGTTAGGCATATATCTCCAAAGAGCAACCATAGTCCTAACCATCACCGGACTTCCACTTCTTGCAGTCTTCATCCTATGCAAGCCCTTATTGCTTTTAATCGGAGAATCATCAGCCTTAGCCTCTGCAGCCGCAGTTTTCGTCTACGGTCTGATCCCACAAATCTTCGCCTACGCTGTCAATTTTCCAATCCAAAAGTTTCTCCAGGCCCAGAGAATTGTGCTTCCAAGTGCCTACATATCTGGGGCTACGCTTGGGGTGCATTTATTGCTAAGTTGGGTGGCTGTATACGAGTTAGGTTGGGGGTTGATTGGTGCCTCGTTGGTTTTGAGCTTGTCTTGGTGGATCATTGTAATCGCTCAGTTCGTCTACATTTTGACAAGTAGAAAATGTAAGCAGACATGGAGTGGGTTTAGTTTGCAGGCGTTTTCGGGGTTGTGGGAGTTCGTGAAGTTATCGGCTGCATCGGCTGTGATGTTGTGCTTGGAGGTGTGGTACTTTCAGGTGCTAGTGTTGATTGCTGGCTTACTAAAGGACCCTGAGCTTGCTTTGAACTCTTTGGCTGTATGCATGGCGATAAATGGAGTACTGTTCATGGTTTCAGTTGGATTTAACGCAGCTATAAGTGTGCGAGTAAGCAATGAGCTAGGAGCTGGGAATCCAAAGTCGGCAGCATTCTCGGTTGTGATAGTAACACTGGTGTCGTTGGCTATTGCTATAGTTGAAGCCGTCATTGTGCTGTCGCTCCGCGATGTAATCAGTTACGCCTTTACCAGTGGCGAAACTGTTGCCGAAGCCGTCTCTAAACTCACTCCGTATTTGGCCGTCACTCTAATCCTTAATGGGATTCAACCTGTCCTCTCGGGGGTGGCTGTTGGGTGTGGATGGCAAGCCTTTGTGGCATATGTGAATGTGGGATGCTACTATGTGGTTGGAATCCCATTAGGCTGTCTTCTGGGATTTAAGTTCGATCTTGGTGCTCAGGGAATATGGTCGGGGATGATAGGAGGAACATTGATGCAGACCATCATCTTATTGTGGGTAACATTTCGTACGGACTGGATTAAAGAGGTGGACACGAGTAAAAAGCGTTTGGAAAAATGGGATGACTCTAATAAACAGCAGCAGCAACCTCTTCTCAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

50.87

Weight (kDa)

8.87

Isoelectric Point (pI)

22.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 34 - 184 1.1e-31 MatE
MatE PF01554 246 - 406 1.9e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 254, 584
AccI GTMKAC 3 cut(s) 414, 558, 639
AccII CGCG 2 cut(s) 224, 1020
AciI CCGC 5 cut(s) 105, 177, 224, 402, 1018
AclWI GGATC 2 cut(s) 418, 623
AcoI YGGCCR 3 cut(s) 74, 130, 1092
AcvI CACGTG 1 cut(s) 119
AfaI GTAC 5 cut(s) 32, 266, 767, 858, 1324
AfiI CCNNNNNNNGG 1 cut(s) 1135
AflIII ACRYGT 3 cut(s) 116, 118, 270
AgsI TTSAA 5 cut(s) 60, 88, 823, 995, 1121
AjnI CCWGG 2 cut(s) 135, 474
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 8 cut(s) 96, 151, 158, 603, 814, 890, 916, 923
AluI AGCT 8 cut(s) 96, 151, 158, 603, 814, 890, 916, 923
Alw21I GWGCWC 1 cut(s) 1252
Alw26I GTCTC 2 cut(s) 224, 1075
AlwI GGATC 2 cut(s) 418, 623
Ama87I CYCGRG 2 cut(s) 146, 1132
AoxI GGCC 5 cut(s) 74, 130, 199, 477, 1092
ApeKI GCWGC 8 cut(s) 155, 158, 398, 731, 887, 941, 1393, 1396
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 478, 805
AsuHPI GGTGA 1 cut(s) 307
AvaI CYCGRG 2 cut(s) 146, 1132
AvaII GGWCC 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 76
BanI GGYRCC 2 cut(s) 254, 584
BauI CACGAG 1 cut(s) 1348
BbrPI CACGTG 1 cut(s) 119
BbsI GAAGAC 3 cut(s) 115, 331, 1214
Bbv12I GWGCWC 1 cut(s) 1252
BbvI GCAGC 8 cut(s) 145, 167, 410, 718, 899, 953, 1405, 1408
BccI CCATC 3 cut(s) 320, 1149, 1304
BceAI ACGGC 5 cut(s) 36, 214, 983, 1052, 1079
BcgI CGANNNNNNTGC 6 cut(s) 930, 964, 1040, 1074, 1229, 1263
BciT130I CCWGG 2 cut(s) 137, 476
BcoDI GTCTC 2 cut(s) 224, 1075
BfaI CTAG 2 cut(s) 779, 917
BfmI CTRYAG 2 cut(s) 396, 987
BglI GCCNNNNNGGC 1 cut(s) 1169
BmcAI AGTACT 1 cut(s) 858
Bme1390I CCNGG 2 cut(s) 137, 476
Bme18I GGWCC 1 cut(s) 805
BmeT110I CYCGRG 2 cut(s) 146, 1132
BmgT120I GGNCC 2 cut(s) 478, 805
BmiI GGNNCC 4 cut(s) 67, 256, 586, 807
BmrFI CCNGG 2 cut(s) 137, 476
BmsI GCATC 4 cut(s) 189, 743, 1178, 1278
BpiI GAAGAC 3 cut(s) 115, 331, 1214
BpmI CTGGAG 1 cut(s) 458
Bpu10I CCTNAGC 3 cut(s) 388, 810, 1251
BpuEI CTTGAG 2 cut(s) 43, 76
BsaAI YACGTR 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 136, 166
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 749, 779
Bsc4I CCNNNNNNNGG 1 cut(s) 1135
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 972, 1044, 1334
Bse3DI GCAATG 1 cut(s) 916
BseBI CCWGG 2 cut(s) 137, 476
BseDI CCNNGG 2 cut(s) 136, 166
BseGI GGATG 6 cut(s) 180, 342, 1160, 1193, 1275, 1381
BseLI CCNNNNNNNGG 1 cut(s) 1135
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 4 cut(s) 58, 644, 801, 1265
BseNI ACTGG 3 cut(s) 972, 1044, 1334
BseRI GAGGAG 2 cut(s) 22, 88
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 8 cut(s) 145, 167, 410, 718, 899, 953, 1405, 1408
BseYI CCCAGC 1 cut(s) 923
Bsh1236I CGCG 2 cut(s) 224, 1020
BshFI GGCC 5 cut(s) 76, 132, 201, 479, 1094
BshNI GGYRCC 2 cut(s) 254, 584
BsiHKAI GWGCWC 1 cut(s) 1252
BsiHKCI CYCGRG 2 cut(s) 146, 1132
BsiSI CCGG 2 cut(s) 129, 318
BsiWI CGTACG 1 cut(s) 1322
BslI CCNNNNNNNGG 1 cut(s) 1135
BsmAI GTCTC 2 cut(s) 224, 1075
BsmBI CGTCTC 1 cut(s) 1075
BsmI GAATGC 1 cut(s) 944
BsnI GGCC 5 cut(s) 76, 132, 201, 479, 1094
BsoBI CYCGRG 2 cut(s) 146, 1132
Bsp1286I GDGCHC 2 cut(s) 259, 1252
Bsp143I GATC 3 cut(s) 423, 615, 1240
BspACI CCGC 5 cut(s) 105, 177, 224, 402, 1018
BspANI GGCC 5 cut(s) 76, 132, 201, 479, 1094
BspCNI CTCAG 4 cut(s) 57, 643, 802, 1264
BspFNI CGCG 2 cut(s) 224, 1020
BspLI GGNNCC 4 cut(s) 67, 256, 586, 807
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 2 cut(s) 418, 623
BspT107I GGYRCC 2 cut(s) 254, 584
BsrDI GCAATG 1 cut(s) 916
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 972, 1044, 1334
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 136, 166
BssMI GATC 3 cut(s) 423, 615, 1240
BssNAI GTATAC 1 cut(s) 559
BssSI CACGAG 1 cut(s) 1348
Bst1107I GTATAC 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 1348
Bst2UI CCWGG 2 cut(s) 137, 476
Bst4CI ACNGT 4 cut(s) 254, 419, 861, 1057
Bst6I CTCTTC 2 cut(s) 106, 1410
BstAPI GCANNNNNTGC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 8 cut(s) 130, 153, 246, 353, 693, 793, 816, 1161
BstDEI CTNAG 6 cut(s) 44, 388, 542, 630, 810, 1251
BstF5I GGATG 6 cut(s) 180, 342, 1160, 1193, 1275, 1381
BstFNI CGCG 2 cut(s) 224, 1020
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 3 cut(s) 426, 618, 1243
BstMAI GTCTC 2 cut(s) 224, 1075
BstMBI GATC 3 cut(s) 423, 615, 1240
BstMWI GCNNNNNNNGC 8 cut(s) 177, 254, 361, 398, 529, 538, 737, 1169
BstNI CCWGG 2 cut(s) 137, 476
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 135, 474
BstSFI CTRYAG 2 cut(s) 396, 987
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 224, 1020
BstV1I GCAGC 8 cut(s) 145, 167, 410, 718, 899, 953, 1405, 1408
BstV2I GAAGAC 3 cut(s) 115, 331, 1214
BstZ17I GTATAC 1 cut(s) 559
BsuRI GGCC 5 cut(s) 76, 132, 201, 479, 1094
BtgZI GCGATG 1 cut(s) 1035
BtsCI GGATG 6 cut(s) 180, 342, 1160, 1193, 1275, 1381
BtsIMutI CAGTG 2 cut(s) 965, 1051
Cac8I GCNNGC 8 cut(s) 130, 153, 246, 353, 693, 793, 816, 1161
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 478, 805
Csp6I GTAC 5 cut(s) 31, 265, 766, 857, 1323
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 6 cut(s) 80, 205, 271, 672, 841, 865
CviQI GTAC 5 cut(s) 31, 265, 766, 857, 1323
DdeI CTNAG 6 cut(s) 44, 388, 542, 630, 810, 1251
DpnI GATC 3 cut(s) 425, 617, 1242
DpnII GATC 3 cut(s) 423, 615, 1240
EaeI YGGCCR 3 cut(s) 74, 130, 1092
Eam1104I CTCTTC 2 cut(s) 106, 1410
EarI CTCTTC 2 cut(s) 106, 1410
EciI GGCGGA 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 805
Eco72I CACGTG 1 cut(s) 119
Eco88I CYCGRG 2 cut(s) 146, 1132
EcoO109I RGGNCCY 1 cut(s) 805
EcoRII CCWGG 2 cut(s) 135, 474
EcoT22I ATGCAT 1 cut(s) 842
Esp3I CGTCTC 1 cut(s) 1075
FaeI CATG 6 cut(s) 83, 208, 274, 675, 844, 868
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 6 cut(s) 79, 204, 270, 671, 840, 864
FauNDI CATATG 1 cut(s) 1174
FblI GTMKAC 3 cut(s) 414, 558, 639
FokI GGATG 6 cut(s) 167, 329, 1167, 1200, 1282, 1388
FspBI CTAG 2 cut(s) 779, 917
GlaI GCGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 927
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 5 cut(s) 76, 132, 201, 479, 1094
HapII CCGG 2 cut(s) 129, 318
HhaI GCGC 1 cut(s) 224
Hin1II CATG 6 cut(s) 83, 208, 274, 675, 844, 868
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 7 cut(s) 10, 232, 377, 928, 1117, 1206, 1379
HpaII CCGG 2 cut(s) 129, 318
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 4 cut(s) 415, 559, 640, 1345
Hpy188I TCNGA 4 cut(s) 39, 70, 374, 423
Hpy188III TCNNGA 3 cut(s) 60, 146, 718
Hpy8I GTNNAC 4 cut(s) 415, 559, 640, 1345
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 4 cut(s) 254, 419, 861, 1057
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 9 cut(s) 155, 335, 351, 398, 532, 691, 734, 840, 1291
HpyF10VI GCNNNNNNNGC 8 cut(s) 177, 254, 361, 398, 529, 538, 737, 1169
HpyF3I CTNAG 6 cut(s) 44, 388, 542, 630, 810, 1251
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 6 cut(s) 83, 208, 274, 675, 844, 868
HspAI GCGC 1 cut(s) 222
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 3 cut(s) 423, 615, 1240
LmnI GCTCC 5 cut(s) 71, 101, 219, 920, 1020
Lsp1109I GCAGC 8 cut(s) 145, 167, 410, 718, 899, 953, 1405, 1408
LweI GCATC 4 cut(s) 189, 743, 1178, 1278
MaeI CTAG 2 cut(s) 779, 917
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 4 cut(s) 961, 1031, 1096, 1312
MalI GATC 3 cut(s) 425, 617, 1242
MboI GATC 3 cut(s) 423, 615, 1240
MboII GAAGA 6 cut(s) 93, 115, 331, 427, 1214, 1397
MhlI GDGCHC 2 cut(s) 259, 1252
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 2 cut(s) 451, 486
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 3 cut(s) 19, 226, 1373
MmeI TCCRAC 4 cut(s) 62, 208, 856, 1183
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 842
MroNI GCCGGC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 76
MseI TTAA 5 cut(s) 368, 882, 1110, 1233, 1335
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 129, 318
MspR9I CCNGG 2 cut(s) 137, 476
Mva1269I GAATGC 1 cut(s) 944
MvaI CCWGG 2 cut(s) 137, 476
MvnI CGCG 2 cut(s) 224, 1020
MwoI GCNNNNNNNGC 8 cut(s) 177, 254, 361, 398, 529, 538, 737, 1169
NaeI GCCGGC 1 cut(s) 130
NdeI CATATG 1 cut(s) 1174
NdeII GATC 3 cut(s) 423, 615, 1240
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 6 cut(s) 83, 208, 274, 675, 844, 868
NlaIV GGNNCC 4 cut(s) 67, 256, 586, 807
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 1096
NsiI ATGCAT 1 cut(s) 842
NspI RCATGY 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 146
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PctI GAATGC 1 cut(s) 944
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 377, 928, 1117, 1206
Pfl23II CGTACG 1 cut(s) 1322
PleI GAGTC 3 cut(s) 18, 226, 1373
PmaCI CACGTG 1 cut(s) 119
PmlI CACGTG 1 cut(s) 119
PpsI GAGTC 3 cut(s) 18, 226, 1373
Ppu21I YACGTR 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 805
PscI ACATGT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 805
Psp6I CCWGG 2 cut(s) 135, 474
PspCI CACGTG 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 923
PspGI CCWGG 2 cut(s) 135, 474
PspLI CGTACG 1 cut(s) 1322
PspN4I GGNNCC 4 cut(s) 67, 256, 586, 807
PspPI GGNCC 2 cut(s) 478, 805
PspPPI RGGWCCY 1 cut(s) 805
PstI CTGCAG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 5 cut(s) 32, 266, 767, 858, 1324
RsaNI GTAC 5 cut(s) 31, 265, 766, 857, 1323
SaqAI TTAA 5 cut(s) 368, 882, 1110, 1233, 1335
Sau3AI GATC 3 cut(s) 423, 615, 1240
Sau96I GGNCC 2 cut(s) 478, 805
ScaI AGTACT 1 cut(s) 858
SchI GAGTC 3 cut(s) 19, 226, 1373
ScrFI CCNGG 2 cut(s) 137, 476
SduI GDGCHC 2 cut(s) 259, 1252
SfaNI GCATC 4 cut(s) 189, 743, 1178, 1278
SfcI CTRYAG 2 cut(s) 396, 987
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 805
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 3 cut(s) 22, 91, 146
SmoI CTYRAG 3 cut(s) 22, 91, 146
Sse9I AATT 2 cut(s) 451, 486
SsiI CCGC 5 cut(s) 105, 177, 224, 402, 1018
SspMI CTAG 2 cut(s) 779, 917
StyD4I CCNGG 2 cut(s) 135, 474
TaaI ACNGT 4 cut(s) 254, 419, 861, 1057
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 147, 1239
TasI AATT 2 cut(s) 451, 486
TatI WGTACW 1 cut(s) 856
TauI GCSGC 2 cut(s) 180, 404
TfiI GAWTC 4 cut(s) 377, 928, 1117, 1206
Tru1I TTAA 5 cut(s) 368, 882, 1110, 1233, 1335
Tru9I TTAA 5 cut(s) 368, 882, 1110, 1233, 1335
TscAI CASTG 2 cut(s) 972, 1051
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 8 cut(s) 155, 158, 398, 731, 887, 941, 1393, 1396
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 2 cut(s) 331, 853
TspGWI ACGGA 2 cut(s) 1074, 1340
TspRI CASTG 2 cut(s) 972, 1051
VpaK11BI GGWCC 1 cut(s) 805
XceI RCATGY 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 3 cut(s) 414, 558, 639
XspI CTAG 2 cut(s) 779, 917
ZrmI AGTACT 1 cut(s) 858
Zsp2I ATGCAT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.