AT1G62520

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014078
Physical Location & Seq
Forward (+)
23144385 .. 23145531
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62520.1

Sequence Viewer

Length: 843 bp
ATGGCAAATGGGTGGGTCAAATCGTTACAATGCAAGTCGAAAGCTTTCGATGATGTTTACAATCCGATTAAAAACCCGAACCCGAATCCGAGCCCGAGTCCGAAACATCTCATGTCAAGCTACAGTTGCAGAAAAAGCACACAGAGTCTAAAAGATGTGATCGAAACCAAAAAACCCAAACCTAAACCGAAGAAACCCAATCCAAAACCGGATAAACGAGAAACCGACCCGGTTTTATCACCATCAACCCGGATCCGATCAACCGGAGTTCGTGATCGTGATCCGTTTTTACCGACATTGACGGAGCTATCGGAAGGTCATCAGTCACGTAATGTGGTGGAGATTATCTTTCAGACGAGCTGGGGTCCGAAACCGTTTTCGGGTCGGGTCGAAATGATTTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAAGAGTATCGTGAAGCCGTGAAAGCTAGGAGCGTGGGGAAAGCGCGTGAAGAGAACGCGCGTTCGGTTGCCGACGGGAATGAAACAATGAGGTTTTACTGTTTGGGTCCAAGTTACGGTGGAGGTGGCAGCGCGTGGGGTATTTTGGGAGGAAAAGGCGGTGGCGCGTCGATATATACGTTTGCCGGAAGTAGCACGGCGAATGAGAAAGCTGGCGGTGGGAAAGGGAGGAAGGCAATGTTGGTTTGTCGGGTCATAGCGGGTCGGGTCACTAAGCAAAACGAGTTAAAGTATGACTCGGATTTGAGGTCACGGTTTGACTCAGTGAGTGGTGACGACGGAGAGTTGCTCGTGTTCGATACACGTGCGGTGTTGCCTTGTTTTCTCATAATCTATCGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

30.81

Weight (kDa)

9.77

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 484, 497, 499, 572, 605
AciI CCGC 4 cut(s) 597, 654, 698, 806
AclWI GGATC 3 cut(s) 247, 260, 275
AcvI CACGTG 1 cut(s) 803
AfiI CCNNNNNNNGG 2 cut(s) 380, 554
AflIII ACRYGT 1 cut(s) 800
AgsI TTSAA 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 6 cut(s) 44, 120, 307, 360, 464, 650
AluI AGCT 6 cut(s) 44, 120, 307, 360, 464, 650
AlwI GGATC 3 cut(s) 247, 260, 275
Ama87I CYCGRG 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 4 cut(s) 484, 499, 572, 605
AspS9I GGNCC 2 cut(s) 365, 545
AsuC2I CCSGG 3 cut(s) 230, 250, 433
AsuHPI GGTGA 2 cut(s) 231, 782
AsuII TTCGAA 1 cut(s) 438
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 2 cut(s) 365, 545
BamHI GGATCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 95
BauI CACGAG 1 cut(s) 788
BbrPI CACGTG 1 cut(s) 803
BbvI GCAGC 1 cut(s) 579
BccI CCATC 1 cut(s) 250
BceAI ACGGC 2 cut(s) 440, 651
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BcnI CCSGG 3 cut(s) 230, 250, 433
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 1 cut(s) 568
BlsI GCNGC 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 230, 250, 433
Bme18I GGWCC 2 cut(s) 365, 545
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 365, 545
BmiI GGNNCC 3 cut(s) 254, 366, 546
BmrFI CCNGG 3 cut(s) 230, 250, 433
BplI GAGNNNNNCTC 2 cut(s) 771, 803
Bpu14I TTCGAA 1 cut(s) 438
BpuMI CCSGG 3 cut(s) 230, 250, 433
BsaAI YACGTR 2 cut(s) 329, 803
BsaBI GATNNNNATC 1 cut(s) 279
BsaWI WCCGGW 2 cut(s) 208, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 554
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 380, 554
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 774
BseXI GCAGC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 5 cut(s) 484, 497, 499, 572, 605
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 6 cut(s) 209, 230, 250, 264, 433, 624
BslI CCNNNNNNNGG 2 cut(s) 380, 554
BsoBI CYCGRG 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 5 cut(s) 159, 252, 257, 274, 280
BspACI CCGC 4 cut(s) 597, 654, 698, 806
BspCNI CTCAG 1 cut(s) 773
BspFNI CGCG 5 cut(s) 484, 497, 499, 572, 605
BspLI GGNNCC 3 cut(s) 254, 366, 546
BspPI GGATC 3 cut(s) 247, 260, 275
BspT104I TTCGAA 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 681
BssMI GATC 5 cut(s) 159, 252, 257, 274, 280
BssSI CACGAG 1 cut(s) 788
Bst2BI CACGAG 1 cut(s) 788
Bst4CI ACNGT 5 cut(s) 125, 375, 539, 557, 753
Bst6I CTCTTC 2 cut(s) 435, 483
BstBAI YACGTR 2 cut(s) 329, 803
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 3 cut(s) 420, 711, 760
BstFNI CGCG 5 cut(s) 484, 497, 499, 572, 605
BstHHI GCGC 4 cut(s) 484, 499, 572, 605
BstKTI GATC 5 cut(s) 162, 255, 260, 277, 283
BstMBI GATC 5 cut(s) 159, 252, 257, 274, 280
BstMWI GCNNNNNNNGC 3 cut(s) 126, 135, 461
BstSCI CCNGG 3 cut(s) 228, 248, 431
BstSFI CTRYAG 1 cut(s) 121
BstUI CGCG 5 cut(s) 484, 497, 499, 572, 605
BstV1I GCAGC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 652
CfoI GCGC 4 cut(s) 484, 499, 572, 605
Cfr13I GGNCC 2 cut(s) 365, 545
CseI GACGC 1 cut(s) 594
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 44, 93, 120, 307, 360, 455, 464, 650
CviKI_1 RGCY 8 cut(s) 44, 93, 120, 307, 360, 455, 464, 650
DdeI CTNAG 3 cut(s) 420, 711, 760
DpnI GATC 5 cut(s) 161, 254, 259, 276, 282
DpnII GATC 5 cut(s) 159, 252, 257, 274, 280
Eam1104I CTCTTC 2 cut(s) 435, 483
EarI CTCTTC 2 cut(s) 435, 483
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 365, 545
Eco72I CACGTG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 1 cut(s) 115
FaiI YATR 6 cut(s) 113, 613, 615, 695, 732, 827
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 691
Fnu4HI GCNGC 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 568
FspBI CTAG 1 cut(s) 465
GlaI GCGC 4 cut(s) 483, 498, 571, 604
GluI GCNGC 1 cut(s) 568
GsaI CCCAGC 1 cut(s) 364
HapII CCGG 6 cut(s) 209, 230, 250, 264, 433, 624
HgaI GACGC 1 cut(s) 594
HhaI GCGC 4 cut(s) 484, 499, 572, 605
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 4 cut(s) 482, 497, 570, 603
HinP1I GCGC 4 cut(s) 482, 497, 570, 603
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 5 cut(s) 85, 97, 145, 734, 758
HpaII CCGG 6 cut(s) 209, 230, 250, 264, 433, 624
HphI GGTGA 2 cut(s) 231, 782
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 8 cut(s) 66, 90, 102, 257, 313, 354, 369, 739
Hpy188III TCNNGA 3 cut(s) 272, 278, 449
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 3 cut(s) 515, 610, 779
HpyAV CCTTC 2 cut(s) 308, 664
HpyCH4III ACNGT 5 cut(s) 125, 375, 539, 557, 753
HpyCH4IV ACGT 3 cut(s) 328, 617, 802
HpyCH4V TGCA 3 cut(s) 33, 129, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 135, 461
HpyF3I CTNAG 3 cut(s) 420, 711, 760
HpySE526I ACGT 3 cut(s) 328, 617, 802
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 4 cut(s) 482, 497, 570, 603
Kzo9I GATC 5 cut(s) 159, 252, 257, 274, 280
LmnI GCTCC 2 cut(s) 304, 468
LpnPI CCDG 8 cut(s) 222, 243, 263, 277, 346, 446, 636, 637
Lsp1109I GCAGC 1 cut(s) 579
MaeI CTAG 1 cut(s) 465
MaeII ACGT 3 cut(s) 328, 617, 802
MaeIII GTNAC 6 cut(s) 24, 324, 551, 706, 747, 770
MalI GATC 5 cut(s) 161, 254, 259, 276, 282
MboI GATC 5 cut(s) 159, 252, 257, 274, 280
MboII GAAGA 3 cut(s) 202, 452, 500
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 95
MlyI GAGTC 4 cut(s) 106, 154, 728, 752
MnlI CCTC 5 cut(s) 522, 554, 581, 660, 738
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 69, 725
MspI CCGG 6 cut(s) 209, 230, 250, 264, 433, 624
MspR9I CCNGG 3 cut(s) 230, 250, 433
MvnI CGCG 5 cut(s) 484, 497, 499, 572, 605
MwoI GCNNNNNNNGC 3 cut(s) 126, 135, 461
NciI CCSGG 3 cut(s) 230, 250, 433
NdeII GATC 5 cut(s) 159, 252, 257, 274, 280
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 254, 366, 546
NmuCI GTSAC 4 cut(s) 324, 706, 747, 770
NspV TTCGAA 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 614
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 569
PleI GAGTC 4 cut(s) 105, 153, 728, 752
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 4 cut(s) 105, 153, 728, 752
Ppu21I YACGTR 2 cut(s) 329, 803
PspCI CACGTG 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 254, 366, 546
PspPI GGNCC 2 cut(s) 365, 545
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 2 cut(s) 69, 725
SatI GCNGC 1 cut(s) 568
Sau3AI GATC 5 cut(s) 159, 252, 257, 274, 280
Sau96I GGNCC 2 cut(s) 365, 545
SchI GAGTC 4 cut(s) 106, 154, 728, 752
ScrFI CCNGG 3 cut(s) 230, 250, 433
SduI GDGCHC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 438
SinI GGWCC 2 cut(s) 365, 545
SsiI CCGC 4 cut(s) 597, 654, 698, 806
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 228, 248, 431
TaaI ACNGT 5 cut(s) 125, 375, 539, 557, 753
TaiI ACGT 3 cut(s) 331, 620, 805
TaqI TCGA 7 cut(s) 38, 48, 162, 390, 438, 608, 795
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 69, 725
Tru9I TTAA 2 cut(s) 69, 725
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 4 cut(s) 324, 706, 747, 770
TseI GCWGC 1 cut(s) 567
Tsp45I GTSAC 4 cut(s) 324, 706, 747, 770
TspDTI ATGAA 1 cut(s) 534
TspGWI ACGGA 3 cut(s) 273, 317, 792
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 2 cut(s) 365, 545
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.