MD06G1062500.v1.1

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014078
Physical Location & Seq
Forward (+)
10614976 .. 10615857
882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1062500.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCGAGTGGGTGGGTGAAGTCGCTGCAATGCAAGTCGAGAGCGTTCGAAGACGTTTACCATCCGAACCCGAAAAATCTGATGAACAGCACGAGTTGCAGAAAGAGCGTTCAAAACATCAAGGACGTCATGGACTCTACAAAACCAAGAAAACCAAAGCCGTCGCCGCCGCCTGGTCCGCCGCCCAAGCGGTCCAAACCCAAACACCTGGGTCGACCCACAAAACCCGAGCCCAGTTCGAGCCCGACCCAACCAGTCCGAACCCGTCAGCCGCGACCCCACGACCCTTTCTTGCCGTCATTGACGGAGCTCCCGGAGGACCACCCCTCGCGCAATGTCGTCGAGATTATCTTCCACACCAGCTGGGGACCGAAGGCCTTTTCGGGTCGGATCGAGATGATTTTTAAAGTCCAGAACGGGTCCAAGACCGTTGCCCGGTTCGAGGAGTACAGGGAGGTTGTGAAGGCGCGGTCCCGGGCCGCGTCCACAGGCGGGGCCCAGTGCGAGGAGGAGAATGCGCGGTGCGTCGCGGACGGAAACGAGGTCATGCGGTTCCACTGCCTCGGTCCCGCCAGCTCCGGCGTTGGGGTGTATGACGCTTGCAGGGGAATGTGGGGGTTTCACGGCGGAAAGGGAAAAGCGATTTGCAATTTTTCCGGTAGCGGCATGGCCCACGAGAGCGCAGGTGCTGGTGGGGCCAGGGGACGGAGGGCGATGCTGGTTTGCCGGGTCATTGCGGGTCGGGTTTCGAAGCAGTTGGAGTTGGAGTCGTTGTTGGATGGCCGGGTCGAGTTCGACTCGGTGAGCGGAGACAGCGGCGAATTGCTGGTGTTTGATTCACGCGCCGTGTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.03

Weight (kDa)

9.59

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 674
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 674
AccBSI CCGCTC 1 cut(s) 807
AccI GTMKAC 1 cut(s) 214
AccII CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 781
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 7 cut(s) 173, 435, 442, 492, 505, 585, 705
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 3 cut(s) 172, 207, 698
AluBI AGCT 3 cut(s) 310, 363, 576
AluI AGCT 3 cut(s) 310, 363, 576
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 2 cut(s) 227, 474
AoxI GGCC 6 cut(s) 375, 477, 495, 669, 696, 781
ApaI GGGCCC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 5 cut(s) 333, 469, 520, 683, 845
AsuC2I CCSGG 6 cut(s) 314, 436, 475, 476, 728, 785
AsuHPI GGTGA 2 cut(s) 28, 814
AsuII TTCGAA 2 cut(s) 48, 749
AvaI CYCGRG 2 cut(s) 227, 474
AvaII GGWCC 7 cut(s) 176, 192, 319, 368, 420, 471, 566
BaeGI GKGCMC 1 cut(s) 499
BanII GRGCYC 4 cut(s) 234, 245, 312, 499
BauI CACGAG 2 cut(s) 91, 674
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 12
BccI CCATC 2 cut(s) 69, 773
BceAI ACGGC 5 cut(s) 145, 280, 640, 830, 838
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 3 cut(s) 174, 209, 700
BcnI CCSGG 6 cut(s) 314, 436, 475, 476, 728, 785
BcoDI GTCTC 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 674
BisI GCNGC 8 cut(s) 26, 167, 170, 182, 272, 480, 664, 817
BlsI GCNGC 8 cut(s) 27, 168, 171, 183, 273, 481, 665, 818
Bme1390I CCNGG 9 cut(s) 174, 209, 314, 436, 475, 476, 700, 728, 785
Bme18I GGWCC 7 cut(s) 176, 192, 319, 368, 420, 471, 566
BmeT110I CYCGRG 2 cut(s) 227, 474
BmiI GGNNCC 8 cut(s) 369, 421, 473, 496, 497, 554, 568, 697
BmrFI CCNGG 9 cut(s) 174, 209, 314, 436, 475, 476, 700, 728, 785
BmrI ACTGGG 2 cut(s) 228, 493
BmsI GCATC 1 cut(s) 705
BmuI ACTGGG 2 cut(s) 228, 493
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 782, 814
Bpu14I TTCGAA 2 cut(s) 48, 749
BpuMI CCSGG 6 cut(s) 314, 436, 475, 476, 728, 785
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 208, 474, 562, 699
BsaWI WCCGGW 1 cut(s) 656
BsaXI ACNNNNNCTCC 4 cut(s) 752, 758, 782, 788
Bsc4I CCNNNNNNNGG 7 cut(s) 173, 435, 442, 492, 505, 585, 705
Bse1I ACTGG 3 cut(s) 234, 254, 499
Bse3DI GCAATG 3 cut(s) 35, 340, 732
BseBI CCWGG 3 cut(s) 174, 209, 700
BseDI CCNNGG 4 cut(s) 208, 474, 562, 699
BseGI GGATG 2 cut(s) 61, 784
BseLI CCNNNNNNNGG 7 cut(s) 173, 435, 442, 492, 505, 585, 705
BseMI GCAATG 3 cut(s) 35, 340, 732
BseNI ACTGG 3 cut(s) 234, 254, 499
BseRI GAGGAG 3 cut(s) 458, 521, 524
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 363
Bsh1236I CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
BshFI GGCC 6 cut(s) 377, 479, 497, 671, 698, 783
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 227, 474
BsiSI CCGG 7 cut(s) 314, 436, 475, 579, 657, 727, 784
BslFI GGGAC 4 cut(s) 381, 457, 552, 717
BslI CCNNNNNNNGG 7 cut(s) 173, 435, 442, 492, 505, 585, 705
BsmAI GTCTC 1 cut(s) 804
BsmFI GGGAC 4 cut(s) 381, 457, 552, 717
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 6 cut(s) 377, 479, 497, 671, 698, 783
BsoBI CYCGRG 2 cut(s) 227, 474
Bsp119I TTCGAA 2 cut(s) 48, 749
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 4 cut(s) 234, 245, 312, 499
Bsp143I GATC 1 cut(s) 390
BspANI GGCC 6 cut(s) 377, 479, 497, 671, 698, 783
BspFNI CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
BspLI GGNNCC 8 cut(s) 369, 421, 473, 496, 497, 554, 568, 697
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 2 cut(s) 48, 749
BsrBI CCGCTC 1 cut(s) 807
BsrDI GCAATG 3 cut(s) 35, 340, 732
BsrI ACTGG 3 cut(s) 234, 254, 499
BssECI CCNNGG 4 cut(s) 208, 474, 562, 699
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 2 cut(s) 91, 674
Bst2BI CACGAG 2 cut(s) 91, 674
Bst2UI CCWGG 3 cut(s) 174, 209, 700
Bst4CI ACNGT 2 cut(s) 430, 879
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBI TTCGAA 2 cut(s) 48, 749
BstC8I GCNNGC 2 cut(s) 574, 601
BstF5I GGATG 2 cut(s) 61, 784
BstFNI CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
BstHHI GCGC 5 cut(s) 333, 469, 520, 683, 845
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 695, 813
BstNI CCWGG 3 cut(s) 174, 209, 700
BstSCI CCNGG 9 cut(s) 172, 207, 312, 434, 473, 474, 698, 726, 783
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 6 cut(s) 377, 479, 497, 671, 698, 783
BtgZI GCGATG 1 cut(s) 728
BtsCI GGATG 2 cut(s) 61, 784
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 506, 556
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 574, 601
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 5 cut(s) 333, 469, 520, 683, 845
Cfr9I CCCGGG 1 cut(s) 474
CseI GACGC 3 cut(s) 471, 514, 605
Csp6I GTAC 1 cut(s) 448
CviAII CATG 3 cut(s) 130, 547, 667
CviQI GTAC 1 cut(s) 448
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraI TTTAAA 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 781
EciI GGCGGA 2 cut(s) 168, 642
Ecl136II GAGCTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 4 cut(s) 234, 245, 312, 499
Eco47I GGWCC 7 cut(s) 176, 192, 319, 368, 420, 471, 566
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 2 cut(s) 227, 474
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 172, 207, 698
EcoT38I GRGCYC 4 cut(s) 234, 245, 312, 499
FaeI CATG 3 cut(s) 133, 550, 670
FaiI YATR 5 cut(s) 131, 548, 594, 668, 873
FaqI GGGAC 4 cut(s) 381, 457, 552, 717
FatI CATG 3 cut(s) 129, 546, 666
FauI CCCGC 3 cut(s) 485, 577, 730
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 8 cut(s) 26, 167, 170, 182, 272, 480, 664, 817
FokI GGATG 2 cut(s) 48, 791
FriOI GRGCYC 4 cut(s) 234, 245, 312, 499
Fsp4HI GCNGC 8 cut(s) 26, 167, 170, 182, 272, 480, 664, 817
GlaI GCGC 5 cut(s) 332, 468, 519, 682, 844
GluI GCNGC 8 cut(s) 26, 167, 170, 182, 272, 480, 664, 817
GsaI CCCAGC 1 cut(s) 367
HaeIII GGCC 6 cut(s) 377, 479, 497, 671, 698, 783
HapII CCGG 7 cut(s) 314, 436, 475, 579, 657, 727, 784
HgaI GACGC 3 cut(s) 471, 514, 605
HhaI GCGC 5 cut(s) 333, 469, 520, 683, 845
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 133, 550, 670
Hin6I GCGC 5 cut(s) 331, 467, 518, 681, 843
HinP1I GCGC 5 cut(s) 331, 467, 518, 681, 843
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 4 cut(s) 134, 767, 797, 836
HpaII CCGG 7 cut(s) 314, 436, 475, 579, 657, 727, 784
HphI GGTGA 2 cut(s) 28, 814
Hpy166II GTNNAC 3 cut(s) 58, 215, 486
Hpy188I TCNGA 4 cut(s) 66, 81, 260, 390
Hpy188III TCNNGA 4 cut(s) 39, 343, 394, 412
Hpy8I GTNNAC 3 cut(s) 58, 215, 486
Hpy99I CGWCG 3 cut(s) 166, 344, 530
HpyAV CCTTC 2 cut(s) 367, 457
HpyCH4III ACNGT 2 cut(s) 430, 879
HpyCH4IV ACGT 2 cut(s) 54, 126
HpyCH4V TGCA 5 cut(s) 28, 33, 99, 603, 648
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 695, 813
HpySE526I ACGT 2 cut(s) 54, 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 133, 550, 670
HspAI GCGC 5 cut(s) 331, 467, 518, 681, 843
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 307, 315, 581
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 705
MaeII ACGT 2 cut(s) 54, 126
MalI GATC 1 cut(s) 392
MbiI CCGCTC 1 cut(s) 807
MboI GATC 1 cut(s) 390
MboII GAAGA 2 cut(s) 62, 343
MhlI GDGCHC 4 cut(s) 234, 245, 312, 499
MluCI AATT 2 cut(s) 649, 821
MlyI GAGTC 3 cut(s) 128, 776, 791
MmeI TCCRAC 4 cut(s) 368, 738, 744, 756
MnlI CCTC 9 cut(s) 310, 337, 436, 448, 499, 502, 535, 572, 702
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 363, 816
MspI CCGG 7 cut(s) 314, 436, 475, 579, 657, 727, 784
MspR9I CCNGG 9 cut(s) 174, 209, 314, 436, 475, 476, 700, 728, 785
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 3 cut(s) 174, 209, 700
MvnI CGCG 7 cut(s) 274, 331, 469, 482, 520, 530, 843
MwoI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 695, 813
NciI CCSGG 6 cut(s) 314, 436, 475, 476, 728, 785
NdeII GATC 1 cut(s) 390
NlaIII CATG 3 cut(s) 133, 550, 670
NlaIV GGNNCC 8 cut(s) 369, 421, 473, 496, 497, 554, 568, 697
NspV TTCGAA 2 cut(s) 48, 749
PaqCI CACCTGC 1 cut(s) 674
PceI AGGCCT 1 cut(s) 377
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 836
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 8 cut(s) 27, 168, 171, 183, 273, 481, 665, 818
PleI GAGTC 3 cut(s) 128, 775, 791
PpsI GAGTC 3 cut(s) 128, 775, 791
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 172, 207, 698
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 172, 207, 698
PspN4I GGNNCC 8 cut(s) 369, 421, 473, 496, 497, 554, 568, 697
PspOMI GGGCCC 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 8 cut(s) 26, 167, 170, 182, 272, 480, 664, 817
Sau3AI GATC 1 cut(s) 390
SchI GAGTC 3 cut(s) 128, 776, 791
ScrFI CCNGG 9 cut(s) 174, 209, 314, 436, 475, 476, 700, 728, 785
SduI GDGCHC 4 cut(s) 234, 245, 312, 499
SetI ASST 9 cut(s) 57, 129, 210, 312, 365, 459, 546, 578, 688
SfaNI GCATC 1 cut(s) 705
SfuI TTCGAA 2 cut(s) 48, 749
SinI GGWCC 7 cut(s) 176, 192, 319, 368, 420, 471, 566
SmaI CCCGGG 1 cut(s) 476
Sse9I AATT 2 cut(s) 649, 821
SseBI AGGCCT 1 cut(s) 377
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 9 cut(s) 172, 207, 312, 434, 473, 474, 698, 726, 783
TaaI ACNGT 2 cut(s) 430, 879
TaiI ACGT 2 cut(s) 57, 129
TaqII GACCGA 2 cut(s) 385, 554
TasI AATT 2 cut(s) 649, 821
TatI WGTACW 1 cut(s) 447
TauI GCSGC 7 cut(s) 169, 172, 184, 274, 482, 666, 819
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 506, 563
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 3 cut(s) 320, 549, 721
TspMI CCCGGG 1 cut(s) 474
TspRI CASTG 2 cut(s) 506, 563
VpaK11BI GGWCC 7 cut(s) 176, 192, 319, 368, 420, 471, 566
XmaI CCCGGG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 214
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.