Rroxscaffold_3G00254390

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014078
Physical Location & Seq
Forward (+)
48552438 .. 48553274
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254390.1

Sequence Viewer

Length: 837 bp
ATGAACAGCGTCAGCTGCAGAAAGAGCGTTCAGAACATCAAAGACGTCGTCGTCGACACAGCCAGGCACCACCACCACCATAAGTCCAGAAAGTCCAAGCTGCTTCCTTCGCCGCCGCAACAGCCACCGTCGAAAAGATCCAACTCGAAATGCGACAGACCCGTAAAGCCCGAACCCGCTCCAAGCCCAGCACCTCAGCGCTCCCGGTTGAGCGCCTCGACGACCCGGCCGGCCCGACCCCACGACCCGTTTCTGACGGAGCTTCCCGAGGGACACCCGTCGCGTAATGTCGTAGAGATTATCTTCCACACCAGCTGGAGCCCCAAGGAGTTTTCGGGTCGGATCGAGATGATATTCAAGGTCCAGAACGGGTCGAAGACGGTGGCGCGGTTCGAGGAGTATAGGGAGGTGGTGAAGTCTCGTTCCCGGGCCGGTTCGGATGGTGGTCCGAAAGTTGGATCCGAGTACGAGGAGGAGAATGCGCGGTGCGTCGCGGACGGAAACGAGGTCATGCGGTTCCACTGCCTTGGGACGCCATCTGGCAGTGGGGTTCACGACTCGTTCGGTGGCGCGTGGAGGTTTCACAGCGGCAAAGGCTCGGCCATTTGCACGTTTTCCGGTAGCGGTGTGGCCCACGAGAATGCGGGTGGGGCGAGGGGCAGGAGAGCCATGCTGGTTTGCCGGGTCGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCCAATCGTTGCTGGATGGCCGGGTCGGGTTTGACTCGGTGAGTGGGGACAACGGCCAGTTGCTAGTGTTTGATCCACGCGCCGTCTTGCCGTGTTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.43

Weight (kDa)

9.76

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AatII GACGTC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 54
AccII CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
AclWI GGATC 5 cut(s) 132, 350, 453, 466, 785
AcoI YGGCCR 4 cut(s) 227, 600, 736, 772
AcyI GRCGYC 2 cut(s) 45, 533
AfaI GTAC 1 cut(s) 467
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 6 cut(s) 15, 100, 262, 315, 712, 718
AluI AGCT 6 cut(s) 15, 100, 262, 315, 712, 718
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 2 cut(s) 423, 706
AlwI GGATC 5 cut(s) 132, 350, 453, 466, 785
Ama87I CYCGRG 2 cut(s) 266, 426
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 7 cut(s) 227, 231, 429, 600, 630, 736, 772
ApeKI GCWGC 3 cut(s) 15, 100, 709
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspLEI GCGC 6 cut(s) 201, 215, 388, 484, 572, 800
AspS9I GGNCC 5 cut(s) 232, 361, 429, 446, 631
AsuC2I CCSGG 6 cut(s) 205, 226, 427, 428, 683, 740
AsuHPI GGTGA 2 cut(s) 424, 769
AvaI CYCGRG 2 cut(s) 266, 426
AvaII GGWCC 2 cut(s) 361, 446
BamHI GGATCC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 323, 720
BauI CACGAG 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 720
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 2, 87, 721
BccI CCATC 3 cut(s) 434, 544, 728
BceAI ACGGC 3 cut(s) 785, 787, 793
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 6 cut(s) 205, 226, 427, 428, 683, 740
BcoDI GTCTC 2 cut(s) 423, 706
BfaI CTAG 1 cut(s) 782
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 2 cut(s) 202, 216
BisI GCNGC 6 cut(s) 16, 101, 113, 116, 589, 710
BlsI GCNGC 6 cut(s) 17, 102, 114, 117, 590, 711
Bme1390I CCNGG 7 cut(s) 64, 205, 226, 427, 428, 683, 740
Bme18I GGWCC 2 cut(s) 361, 446
BmeT110I CYCGRG 2 cut(s) 266, 426
BmgT120I GGNCC 5 cut(s) 232, 361, 429, 446, 631
BmiI GGNNCC 4 cut(s) 68, 320, 460, 518
BmrFI CCNGG 7 cut(s) 64, 205, 226, 427, 428, 683, 740
BoxI GACNNNNGTC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 337, 734
Bpu10I CCTNAGC 1 cut(s) 195
BpuMI CCSGG 6 cut(s) 205, 226, 427, 428, 683, 740
BsaHI GRCGYC 2 cut(s) 45, 533
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 4 cut(s) 267, 324, 426, 526
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse118I RCCGGY 2 cut(s) 229, 431
Bse1I ACTGG 1 cut(s) 775
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 267, 324, 426, 526
BseGI GGATG 2 cut(s) 445, 739
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 775
BseRI GAGGAG 3 cut(s) 410, 485, 488
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 2, 87, 721
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 7 cut(s) 229, 233, 431, 602, 632, 738, 774
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 720
BsiHKCI CYCGRG 2 cut(s) 266, 426
BsiSI CCGG 8 cut(s) 205, 226, 230, 427, 432, 618, 682, 739
BslFI GGGAC 3 cut(s) 285, 544, 779
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 423, 706
BsmFI GGGAC 3 cut(s) 285, 544, 779
BsmI GAATGC 2 cut(s) 484, 646
BsnI GGCC 7 cut(s) 229, 233, 431, 602, 632, 738, 774
Bso31I GGTCTC 1 cut(s) 706
BsoBI CYCGRG 2 cut(s) 266, 426
Bsp1286I GDGCHC 2 cut(s) 323, 720
Bsp143I GATC 4 cut(s) 137, 342, 458, 790
BspANI GGCC 7 cut(s) 229, 233, 431, 602, 632, 738, 774
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
BspLI GGNNCC 4 cut(s) 68, 320, 460, 518
BspMAI CTGCAG 1 cut(s) 20
BspPI GGATC 5 cut(s) 132, 350, 453, 466, 785
BspT107I GGYRCC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 706
BsrBI CCGCTC 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 229, 431
BsrI ACTGG 1 cut(s) 775
BssAI RCCGGY 2 cut(s) 229, 431
BssECI CCNNGG 4 cut(s) 267, 324, 426, 526
BssMI GATC 4 cut(s) 137, 342, 458, 790
BssNI GRCGYC 2 cut(s) 45, 533
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 2 cut(s) 324, 526
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 3 cut(s) 129, 382, 834
BstACI GRCGYC 2 cut(s) 45, 533
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 445, 739
BstFNI CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
BstH2I RGCGCY 2 cut(s) 202, 216
BstHHI GCGC 6 cut(s) 201, 215, 388, 484, 572, 800
BstKTI GATC 4 cut(s) 140, 345, 461, 793
BstMAI GTCTC 2 cut(s) 423, 706
BstMBI GATC 4 cut(s) 137, 342, 458, 790
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 7 cut(s) 15, 24, 109, 121, 594, 650, 715
BstNI CCWGG 1 cut(s) 64
BstPAI GACNNNNGTC 1 cut(s) 277
BstSCI CCNGG 7 cut(s) 62, 203, 224, 425, 426, 681, 738
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
BstV1I GCAGC 3 cut(s) 2, 87, 721
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 2 cut(s) 137, 458
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 2 cut(s) 137, 458
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 7 cut(s) 229, 233, 431, 602, 632, 738, 774
BtsCI GGATG 2 cut(s) 445, 739
BtsI GCAGTG 2 cut(s) 520, 550
BtsIMutI CAGTG 2 cut(s) 520, 550
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 6 cut(s) 201, 215, 388, 484, 572, 800
Cfr10I RCCGGY 2 cut(s) 229, 431
Cfr13I GGNCC 5 cut(s) 232, 361, 429, 446, 631
Cfr9I CCCGGG 1 cut(s) 426
CseI GACGC 2 cut(s) 478, 541
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 511, 670
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 195
DpnI GATC 4 cut(s) 139, 344, 460, 792
DpnII GATC 4 cut(s) 137, 342, 458, 790
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 4 cut(s) 227, 600, 736, 772
EagI CGGCCG 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 718
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 324, 526
Eco24I GRGCYC 2 cut(s) 323, 720
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 361, 446
Eco47III AGCGCT 1 cut(s) 200
Eco52I CGGCCG 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 718
Eco88I CYCGRG 2 cut(s) 266, 426
EcoICRI GAGCTC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 324, 526
EcoT38I GRGCYC 2 cut(s) 323, 720
ErhI CCWWGG 2 cut(s) 324, 526
FaeI CATG 2 cut(s) 514, 673
FaiI YATR 5 cut(s) 81, 402, 512, 671, 828
FaqI GGGAC 3 cut(s) 285, 544, 779
FatI CATG 2 cut(s) 510, 669
FauI CCCGC 3 cut(s) 184, 637, 685
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 6 cut(s) 16, 101, 113, 116, 589, 710
FokI GGATG 2 cut(s) 452, 746
FriOI GRGCYC 2 cut(s) 323, 720
FseI GGCCGGCC 1 cut(s) 233
Fsp4HI GCNGC 6 cut(s) 16, 101, 113, 116, 589, 710
FspBI CTAG 1 cut(s) 782
GlaI GCGC 6 cut(s) 200, 214, 387, 483, 571, 799
GluI GCNGC 6 cut(s) 16, 101, 113, 116, 589, 710
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 2 cut(s) 337, 734
HaeII RGCGCY 2 cut(s) 202, 216
HaeIII GGCC 7 cut(s) 229, 233, 431, 602, 632, 738, 774
HapII CCGG 8 cut(s) 205, 226, 230, 427, 432, 618, 682, 739
HgaI GACGC 2 cut(s) 478, 541
HhaI GCGC 6 cut(s) 201, 215, 388, 484, 572, 800
Hin1I GRCGYC 2 cut(s) 45, 533
Hin1II CATG 2 cut(s) 514, 673
Hin6I GCGC 6 cut(s) 199, 213, 386, 482, 570, 798
HinP1I GCGC 6 cut(s) 199, 213, 386, 482, 570, 798
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 2 cut(s) 557, 752
HpaII CCGG 8 cut(s) 205, 226, 230, 427, 432, 618, 682, 739
HphI GGTGA 2 cut(s) 424, 769
Hpy166II GTNNAC 2 cut(s) 55, 553
Hpy188I TCNGA 6 cut(s) 33, 255, 342, 439, 450, 463
Hpy188III TCNNGA 6 cut(s) 87, 266, 346, 364, 554, 703
Hpy8I GTNNAC 2 cut(s) 55, 553
Hpy99I CGWCG 7 cut(s) 50, 53, 56, 133, 223, 283, 494
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 129, 382, 834
HpyCH4IV ACGT 2 cut(s) 45, 611
HpyCH4V TGCA 2 cut(s) 18, 609
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 24, 109, 121, 594, 650, 715
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 45, 611
Hsp92I GRCGYC 2 cut(s) 45, 533
Hsp92II CATG 2 cut(s) 514, 673
HspAI GCGC 6 cut(s) 199, 213, 386, 482, 570, 798
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Kzo9I GATC 4 cut(s) 137, 342, 458, 790
LmnI GCTCC 6 cut(s) 184, 206, 259, 318, 715, 723
Lsp1109I GCAGC 3 cut(s) 2, 87, 721
MaeI CTAG 1 cut(s) 782
MaeII ACGT 2 cut(s) 45, 611
MalI GATC 4 cut(s) 139, 344, 460, 792
MbiI CCGCTC 1 cut(s) 179
MboI GATC 4 cut(s) 137, 342, 458, 790
MboII GAAGA 2 cut(s) 295, 388
MflI RGATCY 2 cut(s) 137, 458
MhlI GDGCHC 2 cut(s) 323, 720
MlyI GAGTC 2 cut(s) 551, 746
MmeI TCCRAC 3 cut(s) 165, 320, 436
MroNI GCCGGC 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 4 cut(s) 15, 315, 588, 712
MspI CCGG 8 cut(s) 205, 226, 230, 427, 432, 618, 682, 739
MspR9I CCNGG 7 cut(s) 64, 205, 226, 427, 428, 683, 740
Mva1269I GAATGC 2 cut(s) 484, 646
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 6 cut(s) 283, 388, 484, 494, 572, 798
MwoI GCNNNNNNNGC 7 cut(s) 15, 24, 109, 121, 594, 650, 715
NaeI GCCGGC 1 cut(s) 231
NciI CCSGG 6 cut(s) 205, 226, 427, 428, 683, 740
NdeII GATC 4 cut(s) 137, 342, 458, 790
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 2 cut(s) 514, 673
NlaIV GGNNCC 4 cut(s) 68, 320, 460, 518
NmeAIII GCCGAG 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 484, 646
PdiI GCCGGC 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 6 cut(s) 17, 102, 114, 117, 590, 711
PleI GAGTC 2 cut(s) 551, 746
PpsI GAGTC 2 cut(s) 551, 746
PshAI GACNNNNGTC 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 4 cut(s) 68, 320, 460, 518
PspPI GGNCC 5 cut(s) 232, 361, 429, 446, 631
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 137, 458
PsyI GACNNNGTC 1 cut(s) 47
PvuII CAGCTG 3 cut(s) 15, 315, 712
RigI GGCCGGCC 1 cut(s) 233
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 639
SacI GAGCTC 1 cut(s) 720
SalI GTCGAC 1 cut(s) 53
SatI GCNGC 6 cut(s) 16, 101, 113, 116, 589, 710
Sau3AI GATC 4 cut(s) 137, 342, 458, 790
Sau96I GGNCC 5 cut(s) 232, 361, 429, 446, 631
SchI GAGTC 2 cut(s) 551, 746
ScrFI CCNGG 7 cut(s) 64, 205, 226, 427, 428, 683, 740
SduI GDGCHC 2 cut(s) 323, 720
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 2 cut(s) 361, 446
SmaI CCCGGG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 639
SspMI CTAG 1 cut(s) 782
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 7 cut(s) 62, 203, 224, 425, 426, 681, 738
StyI CCWWGG 2 cut(s) 324, 526
TaaI ACNGT 3 cut(s) 129, 382, 834
TaiI ACGT 2 cut(s) 48, 614
TaqI TCGA 8 cut(s) 54, 131, 146, 218, 345, 374, 393, 704
TauI GCSGC 3 cut(s) 115, 118, 591
TscAI CASTG 2 cut(s) 527, 550
TseI GCWGC 3 cut(s) 15, 100, 709
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 272, 513
TspMI CCCGGG 1 cut(s) 426
TspRI CASTG 2 cut(s) 527, 550
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 361, 446
XmaI CCCGGG 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 782
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.