Rw7G017500

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014078
Physical Location & Seq
Reverse (-)
18412332 .. 18413769
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017500.1

Sequence Viewer

Length: 900 bp
ATGGCGAGCGGGTGGGTTAAGTCGTTGCAGTGCAAGTCTAGAGCATTCGAAGACGTCTTTCAACCGACCCCGAAAGCGCTGATGAACAGCGTCAGCTGCAGAAAGAGCGTTCAGAACATCAAGGACGTCGTCGTCGACACAGCCAAGCACCGCCACCATAAGTCCAGAAAGTCCAAGCTGCTTCCTTCGCCGCCGCAGCAGCCACCGTCGAAATGCGACAGACCCGTAAAGCCCGAACCCGCTCCGAGCCCAGCACCTCAGCGCTCCCGGTTAAGCGCCTCGACGACCCGGCCGGCCCGACCCCACGACCCGTTTCTCACGGAGCTTCCCGAGGGACACCCGTCGCGTAATGTCGTAGAGATTATCTTCCACACCAGCTGGAGCCCCAAGGCGTTTTCGGGTCGGATCGAGATGATATTCAAGGTCCAGAACGGGTCGAAGACGGTGGCGCGGTTCGAGGAGTATAGGGAGGTGGTGAAGTCTCGTTCCCGGGCCGGGTCGGATGGTGGTCCGAAAGTTGGATCCGAGTACGAGGAGGAGAATGCCCGGTGCGTCGCGGACGGAAACGAGGTCATGCGGTTCCACTGCCTTGGGACGCCATCTGGCAGTGGGGTTCACGACGCGTTCGGTGGCGCGTGGAGGTTTCACAGCGGCAAAGGCTCGGCCATTTGTACGTTTTCCGGTAGCGGTGTAGCCCACGAGAATGCGGGTGGGGCGAGGGGCAGGAGAGCCATGCTGGTTTGCCGGGTCGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCGAATCGTTGCTGGATGGCCGGGTCGGGTTTGACTCGGTGAGTGGGGACAACGGCGAGTTGCTAGTGTTTGATCCACGCGCCGTCTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.64

Weight (kDa)

9.62

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 2 cut(s) 57, 129
AccBSI CCGCTC 2 cut(s) 9, 242
AccI GTMKAC 1 cut(s) 135
AccII CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
AclWI GGATC 4 cut(s) 413, 516, 529, 848
AcoI YGGCCR 3 cut(s) 290, 663, 799
AcyI GRCGYC 3 cut(s) 54, 126, 596
AfaI GTAC 2 cut(s) 530, 673
AfeI AGCGCT 2 cut(s) 78, 263
AfiI CCNNNNNNNGG 2 cut(s) 495, 518
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 62, 421
AluBI AGCT 6 cut(s) 96, 178, 325, 378, 775, 781
AluI AGCT 6 cut(s) 96, 178, 325, 378, 775, 781
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 2 cut(s) 486, 769
AlwI GGATC 4 cut(s) 413, 516, 529, 848
Ama87I CYCGRG 2 cut(s) 329, 489
Aor51HI AGCGCT 2 cut(s) 78, 263
AoxI GGCC 5 cut(s) 290, 294, 492, 663, 799
ApeKI GCWGC 5 cut(s) 96, 178, 196, 199, 772
AspLEI GCGC 6 cut(s) 79, 264, 278, 451, 635, 863
AspS9I GGNCC 4 cut(s) 295, 424, 492, 509
AsuC2I CCSGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
AsuHPI GGTGA 2 cut(s) 487, 832
AsuII TTCGAA 1 cut(s) 48
AvaI CYCGRG 2 cut(s) 329, 489
AvaII GGWCC 2 cut(s) 424, 509
BamHI GGATCC 1 cut(s) 521
BanII GRGCYC 3 cut(s) 251, 386, 783
BauI CACGAG 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 57, 446
Bbv12I GWGCWC 1 cut(s) 783
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 83, 165, 208, 211, 784
BccI CCATC 3 cut(s) 497, 607, 791
BceAI ACGGC 3 cut(s) 848, 850, 856
BcnI CCSGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
BcoDI GTCTC 2 cut(s) 486, 769
BfaI CTAG 2 cut(s) 39, 845
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 3 cut(s) 80, 265, 279
BisI GCNGC 8 cut(s) 97, 179, 191, 194, 197, 200, 652, 773
BlsI GCNGC 8 cut(s) 98, 180, 192, 195, 198, 201, 653, 774
Bme1390I CCNGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
Bme18I GGWCC 2 cut(s) 424, 509
BmeT110I CYCGRG 2 cut(s) 329, 489
BmgT120I GGNCC 4 cut(s) 295, 424, 492, 509
BmiI GGNNCC 3 cut(s) 383, 523, 581
BmrFI CCNGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
BoxI GACNNNNGTC 1 cut(s) 340
BpiI GAAGAC 2 cut(s) 57, 446
BpmI CTGGAG 2 cut(s) 400, 797
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 48
BpuMI CCSGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
BsaHI GRCGYC 3 cut(s) 54, 126, 596
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 330, 387, 489, 589
BsaWI WCCGGW 1 cut(s) 680
Bsc4I CCNNNNNNNGG 2 cut(s) 495, 518
Bse118I RCCGGY 1 cut(s) 292
BseDI CCNNGG 4 cut(s) 330, 387, 489, 589
BseGI GGATG 2 cut(s) 508, 802
BseLI CCNNNNNNNGG 2 cut(s) 495, 518
BseMII CTCAG 1 cut(s) 272
BseRI GAGGAG 3 cut(s) 473, 548, 551
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 5 cut(s) 83, 165, 208, 211, 784
BseYI CCCAGC 1 cut(s) 250
Bsh1236I CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 5 cut(s) 292, 296, 494, 665, 801
BsiEI CGRYCG 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 2 cut(s) 329, 489
BsiSI CCGG 9 cut(s) 268, 289, 293, 490, 495, 547, 681, 745, 802
BslFI GGGAC 3 cut(s) 348, 607, 842
BslI CCNNNNNNNGG 2 cut(s) 495, 518
BsmAI GTCTC 2 cut(s) 486, 769
BsmFI GGGAC 3 cut(s) 348, 607, 842
BsmI GAATGC 3 cut(s) 44, 547, 709
BsnI GGCC 5 cut(s) 292, 296, 494, 665, 801
Bso31I GGTCTC 1 cut(s) 769
BsoBI CYCGRG 2 cut(s) 329, 489
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 251, 386, 783
Bsp143I GATC 3 cut(s) 405, 521, 853
BspANI GGCC 5 cut(s) 292, 296, 494, 665, 801
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
BspLI GGNNCC 3 cut(s) 383, 523, 581
BspMAI CTGCAG 1 cut(s) 101
BspPI GGATC 4 cut(s) 413, 516, 529, 848
BspT104I TTCGAA 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 769
BsrBI CCGCTC 2 cut(s) 9, 242
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 330, 387, 489, 589
BssMI GATC 3 cut(s) 405, 521, 853
BssNI GRCGYC 3 cut(s) 54, 126, 596
BssSI CACGAG 1 cut(s) 698
BssT1I CCWWGG 2 cut(s) 387, 589
Bst2BI CACGAG 1 cut(s) 698
Bst4CI ACNGT 3 cut(s) 207, 445, 897
BstACI GRCGYC 3 cut(s) 54, 126, 596
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 7, 294
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 508, 802
BstFNI CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
BstH2I RGCGCY 3 cut(s) 80, 265, 279
BstHHI GCGC 6 cut(s) 79, 264, 278, 451, 635, 863
BstKTI GATC 3 cut(s) 408, 524, 856
BstMAI GTCTC 2 cut(s) 486, 769
BstMBI GATC 3 cut(s) 405, 521, 853
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 199, 657, 713, 778
BstPAI GACNNNNGTC 1 cut(s) 340
BstSCI CCNGG 8 cut(s) 266, 287, 488, 489, 494, 545, 744, 801
BstSFI CTRYAG 1 cut(s) 97
BstUI CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
BstV1I GCAGC 5 cut(s) 83, 165, 208, 211, 784
BstV2I GAAGAC 2 cut(s) 57, 446
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 1 cut(s) 521
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 5 cut(s) 292, 296, 494, 665, 801
BtsCI GGATG 2 cut(s) 508, 802
BtsI GCAGTG 3 cut(s) 35, 583, 613
BtsIMutI CAGTG 3 cut(s) 35, 583, 613
Cac8I GCNNGC 2 cut(s) 7, 294
CfoI GCGC 6 cut(s) 79, 264, 278, 451, 635, 863
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 4 cut(s) 295, 424, 492, 509
Cfr9I CCCGGG 1 cut(s) 489
CseI GACGC 4 cut(s) 79, 541, 604, 629
Csp6I GTAC 2 cut(s) 529, 672
CviAII CATG 2 cut(s) 574, 733
CviQI GTAC 2 cut(s) 529, 672
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 407, 523, 855
DpnII GATC 3 cut(s) 405, 521, 853
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 290, 663, 799
EagI CGGCCG 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 781
EclXI CGGCCG 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 387, 589
Eco24I GRGCYC 3 cut(s) 251, 386, 783
Eco31I GGTCTC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 424, 509
Eco47III AGCGCT 2 cut(s) 78, 263
Eco52I CGGCCG 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 781
Eco88I CYCGRG 2 cut(s) 329, 489
EcoICRI GAGCTC 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 387, 589
EcoT38I GRGCYC 3 cut(s) 251, 386, 783
ErhI CCWWGG 2 cut(s) 387, 589
FaeI CATG 2 cut(s) 577, 736
FaiI YATR 5 cut(s) 159, 465, 575, 734, 891
FaqI GGGAC 3 cut(s) 348, 607, 842
FatI CATG 2 cut(s) 573, 732
FauI CCCGC 4 cut(s) 2, 247, 700, 748
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 8 cut(s) 97, 179, 191, 194, 197, 200, 652, 773
FokI GGATG 2 cut(s) 515, 809
FriOI GRGCYC 3 cut(s) 251, 386, 783
FseI GGCCGGCC 1 cut(s) 296
Fsp4HI GCNGC 8 cut(s) 97, 179, 191, 194, 197, 200, 652, 773
FspBI CTAG 2 cut(s) 39, 845
GlaI GCGC 6 cut(s) 78, 263, 277, 450, 634, 862
GluI GCNGC 8 cut(s) 97, 179, 191, 194, 197, 200, 652, 773
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 2 cut(s) 400, 797
HaeII RGCGCY 3 cut(s) 80, 265, 279
HaeIII GGCC 5 cut(s) 292, 296, 494, 665, 801
HapII CCGG 9 cut(s) 268, 289, 293, 490, 495, 547, 681, 745, 802
HgaI GACGC 4 cut(s) 79, 541, 604, 629
HhaI GCGC 6 cut(s) 79, 264, 278, 451, 635, 863
Hin1I GRCGYC 3 cut(s) 54, 126, 596
Hin1II CATG 2 cut(s) 577, 736
Hin6I GCGC 6 cut(s) 77, 262, 276, 449, 633, 861
HinP1I GCGC 6 cut(s) 77, 262, 276, 449, 633, 861
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 785, 815
HpaII CCGG 9 cut(s) 268, 289, 293, 490, 495, 547, 681, 745, 802
HphI GGTGA 2 cut(s) 487, 832
Hpy166II GTNNAC 2 cut(s) 136, 616
Hpy188I TCNGA 6 cut(s) 114, 246, 405, 502, 513, 526
Hpy188III TCNNGA 7 cut(s) 39, 165, 329, 409, 427, 617, 766
Hpy8I GTNNAC 2 cut(s) 136, 616
Hpy99I CGWCG 8 cut(s) 131, 134, 137, 211, 286, 346, 557, 623
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 3 cut(s) 207, 445, 897
HpyCH4IV ACGT 3 cut(s) 54, 126, 674
HpyCH4V TGCA 3 cut(s) 28, 33, 99
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 199, 657, 713, 778
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 3 cut(s) 54, 126, 674
Hsp92I GRCGYC 3 cut(s) 54, 126, 596
Hsp92II CATG 2 cut(s) 577, 736
HspAI GCGC 6 cut(s) 77, 262, 276, 449, 633, 861
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 3 cut(s) 405, 521, 853
LmnI GCTCC 5 cut(s) 247, 269, 322, 381, 778
Lsp1109I GCAGC 5 cut(s) 83, 165, 208, 211, 784
MaeI CTAG 2 cut(s) 39, 845
MaeII ACGT 3 cut(s) 54, 126, 674
MalI GATC 3 cut(s) 407, 523, 855
MbiI CCGCTC 2 cut(s) 9, 242
MboI GATC 3 cut(s) 405, 521, 853
MboII GAAGA 3 cut(s) 62, 358, 451
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 3 cut(s) 251, 386, 783
MluI ACGCGT 1 cut(s) 621
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 3 cut(s) 383, 480, 499
MroNI GCCGGC 1 cut(s) 292
MseI TTAA 2 cut(s) 18, 272
MslI CAYNNNNRTG 1 cut(s) 702
MspA1I CMGCKG 4 cut(s) 96, 378, 651, 775
MspI CCGG 9 cut(s) 268, 289, 293, 490, 495, 547, 681, 745, 802
MspR9I CCNGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
Mva1269I GAATGC 3 cut(s) 44, 547, 709
MvnI CGCG 6 cut(s) 346, 451, 557, 623, 635, 861
MwoI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 199, 657, 713, 778
NaeI GCCGGC 1 cut(s) 294
NciI CCSGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
NdeII GATC 3 cut(s) 405, 521, 853
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 2 cut(s) 577, 736
NlaIV GGNNCC 3 cut(s) 383, 523, 581
NmeAIII GCCGAG 1 cut(s) 641
NspV TTCGAA 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 3 cut(s) 44, 547, 709
PdiI GCCGGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 785
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 8 cut(s) 98, 180, 192, 195, 198, 201, 653, 774
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PshAI GACNNNNGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 383, 523, 581
PspPI GGNCC 4 cut(s) 295, 424, 492, 509
PstI CTGCAG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 3 cut(s) 96, 378, 775
RigI GGCCGGCC 1 cut(s) 296
RsaI GTAC 2 cut(s) 530, 673
RsaNI GTAC 2 cut(s) 529, 672
RseI CAYNNNNRTG 1 cut(s) 702
SacI GAGCTC 1 cut(s) 783
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 18, 272
SatI GCNGC 8 cut(s) 97, 179, 191, 194, 197, 200, 652, 773
Sau3AI GATC 3 cut(s) 405, 521, 853
Sau96I GGNCC 4 cut(s) 295, 424, 492, 509
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 8 cut(s) 268, 289, 490, 491, 496, 547, 746, 803
SduI GDGCHC 3 cut(s) 251, 386, 783
SfcI CTRYAG 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 2 cut(s) 424, 509
SmaI CCCGGG 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 702
SspMI CTAG 2 cut(s) 39, 845
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 8 cut(s) 266, 287, 488, 489, 494, 545, 744, 801
StyI CCWWGG 2 cut(s) 387, 589
TaaI ACNGT 3 cut(s) 207, 445, 897
TaiI ACGT 3 cut(s) 57, 129, 677
TaqI TCGA 9 cut(s) 48, 135, 209, 281, 408, 437, 456, 767, 783
TauI GCSGC 3 cut(s) 193, 196, 654
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 2 cut(s) 18, 272
Tru9I TTAA 2 cut(s) 18, 272
TscAI CASTG 3 cut(s) 35, 590, 613
TseI GCWGC 5 cut(s) 96, 178, 196, 199, 772
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 335, 576
TspMI CCCGGG 1 cut(s) 489
TspRI CASTG 3 cut(s) 35, 590, 613
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 424, 509
XbaI TCTAGA 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 39, 845
ZraI GACGTC 2 cut(s) 55, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.