Prupe.5G073900_v2.0.a1

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014078
Physical Location & Seq
Forward (+)
8817852 .. 8819164
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G073900.1

Sequence Viewer

Length: 903 bp
ATGGCGAGTGGGTGGGTGAAGTCGTTGCAGTGCAAATCCAGAGCATTCGAAGACGTTTACCACCCGACCCCGAAAAATCTCATGAACAGCGCGAGTTGCAGACAAAGCGTTCAGAATATCAAAGACGTCATCGACACCACAAAACACTACAAGCCCAGAAAGCTCAAGCCGCTACCGCCGGCGGGTCCACCACGTCCGCCATCCAAACGACCCGACCCAAAATCCCAACTACCCACCAAACCGGAACCCGATTCAAGCCCGGGTCAGCAAACCCGAACCCGACCCAAGCGACCCCACGACCCGTTTCTACCGGCCCTGACCGAGCTCCCGGAGGGCCACCCTTCGCGCAACGTCGTGGAGATTATCTTCCACACCAGCTGGAGCCCCAAGGCGTTTTCGGGTCGGATCGACATGATATTCAAGGTGCAGAACGGGTCGAAGACCGTTGCCCGGTTCGAGGAGTACAGGGAGAGCGTGAAGGCGCGGTGCCGGGCCGGGTCCAAAGGCGGCGCCCAGTGCGAGGAGGAGAATGTGCGGTGCGTCGCTGACGGAAACGAGGTCATGCGGTTCCACTGCCTGGGGCCCACCACCTCGGGCTTCGGGGTCTACGACACGTGCGGTGGCGCGTGGGGGTTTCATGGAGGCAAGGGCAAAGCGATTTGCACGTTCTCTGGTAGCGGCGTGGCCCACGAGAATGCGGGTGCAGGTGGTTCCAGGGGCCGGAGGGCGATGCTGGTTTGCCGGGTCGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCGAGTCGTTGTTAGATGGCCGGGTCGGGTTTGGGTTCGACTCGGTGAGTGGGGACAACGGCGAGTTGCTAGTGTTTGACTCACGCGCGGTGTTGCCTTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.74

Weight (kDa)

9.51

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 695
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 695
AccB1I GGYRCC 2 cut(s) 486, 509
AccB7I CCANNNNNTGG 1 cut(s) 577
AccI GTMKAC 1 cut(s) 606
AccII CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 796
AcvI CACGTG 1 cut(s) 615
AcyI GRCGYC 2 cut(s) 126, 510
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 6 cut(s) 182, 450, 457, 520, 577, 720
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 2 cut(s) 255, 421
AjiI CACGTC 1 cut(s) 194
AjnI CCWGG 2 cut(s) 576, 713
AluBI AGCT 5 cut(s) 163, 325, 378, 772, 778
AluI AGCT 5 cut(s) 163, 325, 378, 772, 778
Alw21I GWGCWC 2 cut(s) 327, 780
Alw26I GTCTC 1 cut(s) 766
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 3 cut(s) 259, 592, 779
AoxI GGCC 7 cut(s) 312, 334, 492, 581, 684, 718, 796
ApaI GGGCCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 769
AspLEI GCGC 6 cut(s) 92, 348, 484, 512, 626, 866
AspS9I GGNCC 9 cut(s) 185, 313, 334, 492, 498, 581, 582, 685, 718
AsuC2I CCSGG 8 cut(s) 260, 261, 329, 451, 491, 496, 743, 800
AsuHPI GGTGA 2 cut(s) 28, 835
AsuII TTCGAA 1 cut(s) 48
AvaI CYCGRG 3 cut(s) 259, 592, 779
AvaII GGWCC 2 cut(s) 185, 498
BaeGI GKGCMC 1 cut(s) 585
BanI GGYRCC 2 cut(s) 486, 509
BanII GRGCYC 4 cut(s) 327, 386, 585, 780
BauI CACGAG 1 cut(s) 689
BbrPI CACGTG 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 57, 446
Bbv12I GWGCWC 2 cut(s) 327, 780
BbvI GCAGC 1 cut(s) 781
BccI CCATC 2 cut(s) 208, 788
BceAI ACGGC 1 cut(s) 853
BciT130I CCWGG 2 cut(s) 578, 715
BcnI CCSGG 8 cut(s) 260, 261, 329, 451, 491, 496, 743, 800
BcoDI GTCTC 1 cut(s) 766
BfaI CTAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 695
BisI GCNGC 4 cut(s) 170, 508, 679, 770
BlsI GCNGC 4 cut(s) 171, 509, 680, 771
Bme18I GGWCC 2 cut(s) 185, 498
BmeT110I CYCGRG 3 cut(s) 259, 592, 779
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 9 cut(s) 185, 313, 334, 492, 498, 581, 582, 685, 718
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 720
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 57, 446
BpmI CTGGAG 2 cut(s) 400, 794
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 8 cut(s) 260, 261, 329, 451, 491, 496, 743, 800
BsaAI YACGTR 1 cut(s) 615
BsaHI GRCGYC 2 cut(s) 126, 510
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 5 cut(s) 259, 387, 577, 591, 714
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 450, 457, 520, 577, 720
Bse118I RCCGGY 2 cut(s) 178, 310
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 2 cut(s) 578, 715
BseDI CCNNGG 5 cut(s) 259, 387, 577, 591, 714
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 6 cut(s) 182, 450, 457, 520, 577, 720
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 3 cut(s) 473, 536, 539
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 1 cut(s) 781
BsgI GTGCAG 2 cut(s) 446, 723
Bsh1236I CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
BshFI GGCC 7 cut(s) 314, 336, 494, 583, 686, 720, 798
BshNI GGYRCC 2 cut(s) 486, 509
BsiHKAI GWGCWC 2 cut(s) 327, 780
BsiHKCI CYCGRG 3 cut(s) 259, 592, 779
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 6 cut(s) 182, 450, 457, 520, 577, 720
BsmAI GTCTC 1 cut(s) 766
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 2 cut(s) 44, 700
BsnI GGCC 7 cut(s) 314, 336, 494, 583, 686, 720, 798
Bso31I GGTCTC 1 cut(s) 766
BsoBI CYCGRG 3 cut(s) 259, 592, 779
Bsp119I TTCGAA 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 581
Bsp1286I GDGCHC 4 cut(s) 327, 386, 585, 780
Bsp143I GATC 1 cut(s) 405
BspANI GGCC 7 cut(s) 314, 336, 494, 583, 686, 720, 798
BspFNI CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
BspHI TCATGA 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 695
BspPI GGATC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 486, 509
BspTNI GGTCTC 1 cut(s) 766
BsrFI RCCGGY 2 cut(s) 178, 310
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 2 cut(s) 178, 310
BssECI CCNNGG 5 cut(s) 259, 387, 577, 591, 714
BssMI GATC 1 cut(s) 405
BssNI GRCGYC 2 cut(s) 126, 510
BssSI CACGAG 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 689
Bst2UI CCWGG 2 cut(s) 578, 715
Bst4CI ACNGT 2 cut(s) 445, 900
BstACI GRCGYC 2 cut(s) 126, 510
BstBAI YACGTR 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 6 cut(s) 92, 348, 484, 512, 626, 866
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 766
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 7 cut(s) 96, 105, 160, 169, 175, 516, 775
BstNI CCWGG 2 cut(s) 578, 715
BstSLI GKGCMC 1 cut(s) 585
BstUI CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
BstV1I GCAGC 1 cut(s) 781
BstV2I GAAGAC 2 cut(s) 57, 446
BsuRI GGCC 7 cut(s) 314, 336, 494, 583, 686, 720, 798
BtgZI GCGATG 1 cut(s) 743
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 200
BtsI GCAGTG 2 cut(s) 35, 571
BtsIMutI CAGTG 3 cut(s) 35, 521, 571
BveI ACCTGC 1 cut(s) 695
Cac8I GCNNGC 1 cut(s) 180
CciI TCATGA 1 cut(s) 81
CfoI GCGC 6 cut(s) 92, 348, 484, 512, 626, 866
Cfr10I RCCGGY 2 cut(s) 178, 310
Cfr13I GGNCC 9 cut(s) 185, 313, 334, 492, 498, 581, 582, 685, 718
Cfr9I CCCGGG 1 cut(s) 259
CseI GACGC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 463
CviAII CATG 4 cut(s) 82, 412, 562, 638
CviQI GTAC 1 cut(s) 463
DinI GGCGCC 1 cut(s) 511
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 796
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 2 cut(s) 325, 778
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 4 cut(s) 327, 386, 585, 780
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 185, 498
Eco53kI GAGCTC 2 cut(s) 325, 778
Eco72I CACGTG 1 cut(s) 615
Eco88I CYCGRG 3 cut(s) 259, 592, 779
EcoICRI GAGCTC 2 cut(s) 325, 778
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 576, 713
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 4 cut(s) 327, 386, 585, 780
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 85, 415, 565, 641
FaiI YATR 5 cut(s) 83, 413, 563, 639, 894
FaqI GGGAC 1 cut(s) 845
FatI CATG 4 cut(s) 81, 411, 561, 637
FauI CCCGC 3 cut(s) 175, 691, 745
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 170, 508, 679, 770
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 4 cut(s) 327, 386, 585, 780
Fsp4HI GCNGC 4 cut(s) 170, 508, 679, 770
FspBI CTAG 1 cut(s) 848
GlaI GCGC 6 cut(s) 91, 347, 483, 511, 625, 865
GluI GCNGC 4 cut(s) 170, 508, 679, 770
GsuI CTGGAG 2 cut(s) 400, 794
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 7 cut(s) 314, 336, 494, 583, 686, 720, 798
HgaI GACGC 1 cut(s) 529
HhaI GCGC 6 cut(s) 92, 348, 484, 512, 626, 866
Hin1I GRCGYC 2 cut(s) 126, 510
Hin1II CATG 4 cut(s) 85, 415, 565, 641
Hin6I GCGC 6 cut(s) 90, 346, 482, 510, 624, 864
HinP1I GCGC 6 cut(s) 90, 346, 482, 510, 624, 864
HinfI GANTC 4 cut(s) 251, 782, 818, 857
HphI GGTGA 2 cut(s) 28, 835
Hpy166II GTNNAC 3 cut(s) 58, 188, 607
Hpy188I TCNGA 2 cut(s) 114, 405
Hpy188III TCNNGA 3 cut(s) 39, 82, 763
Hpy8I GTNNAC 3 cut(s) 58, 188, 607
Hpy99I CGWCG 2 cut(s) 356, 545
HpyAV CCTTC 2 cut(s) 351, 472
HpyCH4III ACNGT 2 cut(s) 445, 900
HpyCH4IV ACGT 6 cut(s) 54, 126, 193, 351, 614, 665
HpyCH4V TGCA 6 cut(s) 28, 33, 99, 427, 663, 704
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 105, 160, 169, 175, 516, 775
HpySE526I ACGT 6 cut(s) 54, 126, 193, 351, 614, 665
Hsp92I GRCGYC 2 cut(s) 126, 510
Hsp92II CATG 4 cut(s) 85, 415, 565, 641
HspAI GCGC 6 cut(s) 90, 346, 482, 510, 624, 864
KasI GGCGCC 1 cut(s) 509
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 330, 381, 775
Lsp1109I GCAGC 1 cut(s) 781
LweI GCATC 1 cut(s) 720
MaeI CTAG 1 cut(s) 848
MaeII ACGT 6 cut(s) 54, 126, 193, 351, 614, 665
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 3 cut(s) 62, 358, 451
MhlI GDGCHC 4 cut(s) 327, 386, 585, 780
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 3 cut(s) 791, 812, 851
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 8 cut(s) 325, 451, 514, 517, 550, 601, 635, 717
MreI CGCCGGCG 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 378, 772
Mva1269I GAATGC 2 cut(s) 44, 700
MvaI CCWGG 2 cut(s) 578, 715
MvnI CGCG 6 cut(s) 92, 346, 484, 626, 864, 866
MwoI GCNNNNNNNGC 7 cut(s) 96, 105, 160, 169, 175, 516, 775
NaeI GCCGGC 1 cut(s) 180
NarI GGCGCC 1 cut(s) 510
NciI CCSGG 8 cut(s) 260, 261, 329, 451, 491, 496, 743, 800
NdeII GATC 1 cut(s) 405
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 4 cut(s) 85, 415, 565, 641
NspV TTCGAA 1 cut(s) 48
PaeR7I CTCGAG 1 cut(s) 779
PagI TCATGA 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 695
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PctI GAATGC 2 cut(s) 44, 700
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 4 cut(s) 171, 509, 680, 771
PleI GAGTC 3 cut(s) 790, 812, 851
PluTI GGCGCC 1 cut(s) 513
PmaCI CACGTG 1 cut(s) 615
PmlI CACGTG 1 cut(s) 615
PpsI GAGTC 3 cut(s) 790, 812, 851
Ppu21I YACGTR 1 cut(s) 615
Psp124BI GAGCTC 2 cut(s) 327, 780
Psp6I CCWGG 2 cut(s) 576, 713
PspCI CACGTG 1 cut(s) 615
PspGI CCWGG 2 cut(s) 576, 713
PspOMI GGGCCC 1 cut(s) 581
PspPI GGNCC 9 cut(s) 185, 313, 334, 492, 498, 581, 582, 685, 718
PspXI VCTCGAGB 1 cut(s) 779
PvuII CAGCTG 2 cut(s) 378, 772
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 693
SacI GAGCTC 2 cut(s) 327, 780
SatI GCNGC 4 cut(s) 170, 508, 679, 770
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 9 cut(s) 185, 313, 334, 492, 498, 581, 582, 685, 718
SchI GAGTC 3 cut(s) 791, 812, 851
SduI GDGCHC 4 cut(s) 327, 386, 585, 780
SfaNI GCATC 1 cut(s) 720
SfoI GGCGCC 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 779
SfuI TTCGAA 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 178
SinI GGWCC 2 cut(s) 185, 498
SlaI CTCGAG 1 cut(s) 779
SmaI CCCGGG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 164, 779
SmoI CTYRAG 2 cut(s) 164, 779
SspDI GGCGCC 1 cut(s) 509
SspMI CTAG 1 cut(s) 848
SstI GAGCTC 2 cut(s) 327, 780
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 445, 900
TaiI ACGT 6 cut(s) 57, 129, 196, 354, 617, 668
TaqI TCGA 8 cut(s) 48, 132, 408, 437, 456, 764, 780, 816
TaqII GACCGA 1 cut(s) 335
TatI WGTACW 1 cut(s) 462
TauI GCSGC 3 cut(s) 172, 510, 681
TfiI GAWTC 1 cut(s) 251
TscAI CASTG 3 cut(s) 35, 521, 578
TseI GCWGC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 98, 626
TspGWI ACGGA 1 cut(s) 564
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 3 cut(s) 35, 521, 578
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 2 cut(s) 185, 498
XhoI CTCGAG 1 cut(s) 779
XmaI CCCGGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 1 cut(s) 848
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.