pycom04g07690

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0014078
Physical Location & Seq
Reverse (-)
8498620 .. 8499731
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07690.1

Sequence Viewer

Length: 981 bp
ATGAAAAGAAAGACAGAAATCCACGTGGACTCTGAAAAACCTCGCTCAGAGGAGAGAAGAAGACGACGACGAGGTATTGAACGAAACGTTATCTTGTCGAGAGCTCCGTTAATGGCGAGTGGGTGGGTGAAGTCGCTGCAATGCAAGTCGAGAGCCTTCGAAGACGTTTACCATCCGAACCCCAAAAATCTGATGAACAGCGCGAGTTGCAGGAAGAGCGTTCAAAACATCAAGGACGTCATCGACACCACAAAATCCAGAAAACCGAAGCCGTTGCCGCCGCCCAAGCGGTCCGAACCCAAACACCTAGGGCGACCCACAAAAACCGAACCCGTATCGAGCCCAACCCATCAACTCCGAACCCGGCAACCGCGACCCCATGATCCGTTTTTACCGTCCTTGACGGAGCTCCCGGAGGGCCATCCGTCGCGCAATGTCGTCGAGATTATCTTCCACACCAGCTGGGGCCCCAAGGCGTTTTCTGGTCGGATCGAGATGATTTTTAAGGTCCAGAACGGGTCCAAGACCGTGGCCCGGTTTGAGGAGCACAGGGAGGTCGTGAAGGCGCGGTCCCGGGCCGGGTCCATAGGCGGGGCACAGTGCGAGGAGGAGAATGCCCGCTGCATGGCGGACGGAAACGAGGTGATGCGGTTCCACTGCCTCGGGCCCGCCAGCTCCGGCGTCGGGGTGTACGACGCGTGCAGCGGCGTGTGGGGGTTTCACGGTGGAAAGGGTAAAGCGATTTGCACGTTTTCCGGTAGCGGCGTGGCCCACGAGAGCGCGGGTGCGGGTGGGGCCAGGGGCCGGAGAGCGATGATGGTTTGTCGGGTCGTGGCGGGTCGGGTTTCGAAGCGGCTGGAGCTTGAGTCGTTGTTGGATGGCCGGGTCGGGTTCGACTCGGTGAGCGGAGGCAACGGCGAGTTGTTGGTGTTTGATTCACGCGCCGTGTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.0

Weight (kDa)

10.06

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 906
AccII CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
AclI AACGTT 1 cut(s) 87
AclWI GGATC 2 cut(s) 377, 497
AcoI YGGCCR 1 cut(s) 880
AcvI CACGTG 1 cut(s) 25
AcyI GRCGYC 2 cut(s) 237, 681
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 7 cut(s) 534, 541, 579, 591, 625, 684, 804
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 2 cut(s) 80, 224
AjnI CCWGG 1 cut(s) 797
AluBI AGCT 5 cut(s) 104, 409, 462, 675, 862
AluI AGCT 5 cut(s) 104, 409, 462, 675, 862
Alw21I GWGCWC 3 cut(s) 106, 411, 549
AlwI GGATC 2 cut(s) 377, 497
Ama87I CYCGRG 2 cut(s) 573, 662
AoxI GGCC 9 cut(s) 418, 466, 531, 576, 665, 768, 795, 802, 880
ApaI GGGCCC 2 cut(s) 470, 669
ApeKI GCWGC 3 cut(s) 136, 621, 702
AspA2I CCTAGG 1 cut(s) 307
AspLEI GCGC 5 cut(s) 203, 432, 568, 782, 944
AsuC2I CCSGG 7 cut(s) 364, 413, 535, 574, 575, 580, 884
AsuHPI GGTGA 3 cut(s) 139, 655, 913
AsuII TTCGAA 2 cut(s) 159, 848
AvaI CYCGRG 2 cut(s) 573, 662
AvaII GGWCC 5 cut(s) 291, 508, 519, 570, 582
AvrII CCTAGG 1 cut(s) 307
BaeGI GKGCMC 3 cut(s) 470, 598, 669
BanII GRGCYC 5 cut(s) 106, 344, 411, 470, 669
BauI CACGAG 1 cut(s) 773
BbrPI CACGTG 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 67, 168
Bbv12I GWGCWC 3 cut(s) 106, 411, 549
BbvI GCAGC 3 cut(s) 123, 608, 714
BccI CCATC 5 cut(s) 180, 357, 429, 811, 872
BceAI ACGGC 4 cut(s) 256, 929, 931, 937
BcgI CGANNNNNNTGC 4 cut(s) 256, 290, 421, 455
BciT130I CCWGG 1 cut(s) 799
BcnI CCSGG 7 cut(s) 364, 413, 535, 574, 575, 580, 884
BfaI CTAG 1 cut(s) 308
BisI GCNGC 8 cut(s) 137, 278, 281, 622, 703, 706, 763, 854
BlnI CCTAGG 1 cut(s) 307
BlsI GCNGC 8 cut(s) 138, 279, 282, 623, 704, 707, 764, 855
Bme1390I CCNGG 8 cut(s) 364, 413, 535, 574, 575, 580, 799, 884
Bme18I GGWCC 5 cut(s) 291, 508, 519, 570, 582
BmeT110I CYCGRG 2 cut(s) 573, 662
BmrFI CCNGG 8 cut(s) 364, 413, 535, 574, 575, 580, 799, 884
BmsI GCATC 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 67, 168
BpmI CTGGAG 1 cut(s) 878
Bpu14I TTCGAA 2 cut(s) 159, 848
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 7 cut(s) 364, 413, 535, 574, 575, 580, 884
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 237, 681
BsaJI CCNNGG 6 cut(s) 307, 471, 528, 573, 661, 798
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 7 cut(s) 534, 541, 579, 591, 625, 684, 804
Bse3DI GCAATG 2 cut(s) 146, 439
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 6 cut(s) 307, 471, 528, 573, 661, 798
BseGI GGATG 3 cut(s) 172, 421, 883
BseLI CCNNNNNNNGG 7 cut(s) 534, 541, 579, 591, 625, 684, 804
BseMI GCAATG 2 cut(s) 146, 439
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 4 cut(s) 65, 557, 620, 623
BseSI GKGCMC 3 cut(s) 470, 598, 669
BseXI GCAGC 3 cut(s) 123, 608, 714
BseYI CCCAGC 1 cut(s) 462
BsgI GTGCAG 1 cut(s) 721
Bsh1236I CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
BshFI GGCC 9 cut(s) 420, 468, 533, 578, 667, 770, 797, 804, 882
BsiHKAI GWGCWC 3 cut(s) 106, 411, 549
BsiHKCI CYCGRG 2 cut(s) 573, 662
BsiSI CCGG 9 cut(s) 364, 413, 535, 574, 579, 678, 756, 805, 883
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 7 cut(s) 534, 541, 579, 591, 625, 684, 804
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 9 cut(s) 420, 468, 533, 578, 667, 770, 797, 804, 882
BsoBI CYCGRG 2 cut(s) 573, 662
Bsp119I TTCGAA 2 cut(s) 159, 848
Bsp120I GGGCCC 2 cut(s) 466, 665
Bsp1286I GDGCHC 7 cut(s) 106, 344, 411, 470, 549, 598, 669
Bsp143I GATC 2 cut(s) 382, 489
BspANI GGCC 9 cut(s) 420, 468, 533, 578, 667, 770, 797, 804, 882
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
BspPI GGATC 2 cut(s) 377, 497
BspQI GCTCTTC 1 cut(s) 209
BspT104I TTCGAA 2 cut(s) 159, 848
BsrBI CCGCTC 1 cut(s) 906
BsrDI GCAATG 2 cut(s) 146, 439
BssECI CCNNGG 6 cut(s) 307, 471, 528, 573, 661, 798
BssMI GATC 2 cut(s) 382, 489
BssNI GRCGYC 2 cut(s) 237, 681
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 307, 471
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 5 cut(s) 396, 529, 600, 725, 978
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 2 cut(s) 237, 681
BstBAI YACGTR 1 cut(s) 25
BstBI TTCGAA 2 cut(s) 159, 848
BstC8I GCNNGC 4 cut(s) 619, 669, 673, 700
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 3 cut(s) 172, 421, 883
BstFNI CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
BstHHI GCGC 5 cut(s) 203, 432, 568, 782, 944
BstKTI GATC 2 cut(s) 385, 492
BstMBI GATC 2 cut(s) 382, 489
BstMWI GCNNNNNNNGC 6 cut(s) 207, 216, 277, 286, 794, 859
BstNI CCWGG 1 cut(s) 799
BstSCI CCNGG 8 cut(s) 362, 411, 533, 572, 573, 578, 797, 882
BstSLI GKGCMC 3 cut(s) 470, 598, 669
BstUI CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
BstV1I GCAGC 3 cut(s) 123, 608, 714
BstV2I GAAGAC 2 cut(s) 67, 168
BstXI CCANNNNNNTGG 1 cut(s) 529
BsuRI GGCC 9 cut(s) 420, 468, 533, 578, 667, 770, 797, 804, 882
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 827
BtsCI GGATG 3 cut(s) 172, 421, 883
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 2 cut(s) 605, 655
Cac8I GCNNGC 4 cut(s) 619, 669, 673, 700
CfoI GCGC 5 cut(s) 203, 432, 568, 782, 944
Cfr9I CCCGGG 1 cut(s) 573
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 2 cut(s) 670, 704
Csp6I GTAC 1 cut(s) 691
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 2 cut(s) 380, 625
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 384, 491
DpnII GATC 2 cut(s) 382, 489
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 644
Ecl136II GAGCTC 2 cut(s) 104, 409
Eco130I CCWWGG 2 cut(s) 307, 471
Eco24I GRGCYC 5 cut(s) 106, 344, 411, 470, 669
Eco47I GGWCC 5 cut(s) 291, 508, 519, 570, 582
Eco53kI GAGCTC 2 cut(s) 104, 409
Eco72I CACGTG 1 cut(s) 25
Eco88I CYCGRG 2 cut(s) 573, 662
EcoICRI GAGCTC 2 cut(s) 104, 409
EcoO109I RGGNCCY 2 cut(s) 466, 467
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 2 cut(s) 307, 471
EcoT38I GRGCYC 5 cut(s) 106, 344, 411, 470, 669
ErhI CCWWGG 2 cut(s) 307, 471
FaeI CATG 2 cut(s) 383, 628
FaiI YATR 4 cut(s) 381, 587, 626, 972
FaqI GGGAC 1 cut(s) 556
FatI CATG 2 cut(s) 379, 624
FauI CCCGC 6 cut(s) 584, 626, 676, 775, 781, 829
Fnu4HI GCNGC 8 cut(s) 137, 278, 281, 622, 703, 706, 763, 854
FokI GGATG 3 cut(s) 159, 408, 890
FriOI GRGCYC 5 cut(s) 106, 344, 411, 470, 669
Fsp4HI GCNGC 8 cut(s) 137, 278, 281, 622, 703, 706, 763, 854
FspBI CTAG 1 cut(s) 308
GlaI GCGC 5 cut(s) 202, 431, 567, 781, 943
GluI GCNGC 8 cut(s) 137, 278, 281, 622, 703, 706, 763, 854
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 9 cut(s) 420, 468, 533, 578, 667, 770, 797, 804, 882
HapII CCGG 9 cut(s) 364, 413, 535, 574, 579, 678, 756, 805, 883
HgaI GACGC 2 cut(s) 670, 704
HhaI GCGC 5 cut(s) 203, 432, 568, 782, 944
Hin1I GRCGYC 2 cut(s) 237, 681
Hin1II CATG 2 cut(s) 383, 628
Hin6I GCGC 5 cut(s) 201, 430, 566, 780, 942
HinP1I GCGC 5 cut(s) 201, 430, 566, 780, 942
HinfI GANTC 4 cut(s) 29, 866, 896, 935
HpaII CCGG 9 cut(s) 364, 413, 535, 574, 579, 678, 756, 805, 883
HphI GGTGA 3 cut(s) 139, 655, 913
Hpy166II GTNNAC 3 cut(s) 28, 169, 691
Hpy188I TCNGA 7 cut(s) 34, 49, 177, 192, 295, 359, 489
Hpy188III TCNNGA 7 cut(s) 99, 150, 258, 442, 493, 511, 559
Hpy8I GTNNAC 3 cut(s) 28, 169, 691
Hpy99I CGWCG 6 cut(s) 69, 72, 430, 443, 686, 698
HpyAV CCTTC 2 cut(s) 166, 556
HpyCH4III ACNGT 5 cut(s) 396, 529, 600, 725, 978
HpyCH4IV ACGT 5 cut(s) 24, 87, 165, 237, 749
HpyCH4V TGCA 6 cut(s) 139, 144, 210, 624, 702, 747
HpyF10VI GCNNNNNNNGC 6 cut(s) 207, 216, 277, 286, 794, 859
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 5 cut(s) 24, 87, 165, 237, 749
Hsp92I GRCGYC 2 cut(s) 237, 681
Hsp92II CATG 2 cut(s) 383, 628
HspAI GCGC 5 cut(s) 201, 430, 566, 780, 942
Kzo9I GATC 2 cut(s) 382, 489
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 6 cut(s) 109, 406, 414, 544, 680, 859
Lsp1109I GCAGC 3 cut(s) 123, 608, 714
LweI GCATC 1 cut(s) 636
MaeI CTAG 1 cut(s) 308
MaeII ACGT 5 cut(s) 24, 87, 165, 237, 749
MalI GATC 2 cut(s) 384, 491
MbiI CCGCTC 1 cut(s) 906
MboI GATC 2 cut(s) 382, 489
MboII GAAGA 5 cut(s) 69, 72, 173, 226, 442
MhlI GDGCHC 7 cut(s) 106, 344, 411, 470, 549, 598, 669
MluI ACGCGT 1 cut(s) 696
MlyI GAGTC 3 cut(s) 23, 875, 890
MmeI TCCRAC 2 cut(s) 467, 855
MseI TTAA 2 cut(s) 110, 504
MspA1I CMGCKG 3 cut(s) 462, 621, 705
MspI CCGG 9 cut(s) 364, 413, 535, 574, 579, 678, 756, 805, 883
MspR9I CCNGG 8 cut(s) 364, 413, 535, 574, 575, 580, 799, 884
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 1 cut(s) 799
MvnI CGCG 7 cut(s) 203, 373, 430, 568, 698, 782, 942
MwoI GCNNNNNNNGC 6 cut(s) 207, 216, 277, 286, 794, 859
NciI CCSGG 7 cut(s) 364, 413, 535, 574, 575, 580, 884
NdeII GATC 2 cut(s) 382, 489
NlaIII CATG 2 cut(s) 383, 628
NspV TTCGAA 2 cut(s) 159, 848
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 690
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 1 cut(s) 935
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 8 cut(s) 138, 279, 282, 623, 704, 707, 764, 855
PleI GAGTC 3 cut(s) 23, 874, 890
PmaCI CACGTG 1 cut(s) 25
PmlI CACGTG 1 cut(s) 25
PpsI GAGTC 3 cut(s) 23, 874, 890
Ppu21I YACGTR 1 cut(s) 25
Psp124BI GAGCTC 2 cut(s) 106, 411
Psp1406I AACGTT 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 797
PspCI CACGTG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 1 cut(s) 797
PspOMI GGGCCC 2 cut(s) 466, 665
PvuII CAGCTG 1 cut(s) 462
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SacI GAGCTC 2 cut(s) 106, 411
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 2 cut(s) 110, 504
SatI GCNGC 8 cut(s) 137, 278, 281, 622, 703, 706, 763, 854
Sau3AI GATC 2 cut(s) 382, 489
SchI GAGTC 3 cut(s) 23, 875, 890
ScrFI CCNGG 8 cut(s) 364, 413, 535, 574, 575, 580, 799, 884
SduI GDGCHC 7 cut(s) 106, 344, 411, 470, 549, 598, 669
SfaNI GCATC 1 cut(s) 636
SfuI TTCGAA 2 cut(s) 159, 848
SinI GGWCC 5 cut(s) 291, 508, 519, 570, 582
SmaI CCCGGG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 2 cut(s) 106, 411
StyD4I CCNGG 8 cut(s) 362, 411, 533, 572, 573, 578, 797, 882
StyI CCWWGG 2 cut(s) 307, 471
TaaI ACNGT 5 cut(s) 396, 529, 600, 725, 978
TaiI ACGT 5 cut(s) 27, 90, 168, 240, 752
TaqI TCGA 9 cut(s) 98, 149, 159, 243, 338, 441, 492, 848, 894
TauI GCSGC 5 cut(s) 280, 283, 708, 765, 856
TfiI GAWTC 1 cut(s) 935
Tru1I TTAA 2 cut(s) 110, 504
Tru9I TTAA 2 cut(s) 110, 504
TscAI CASTG 2 cut(s) 605, 662
TseI GCWGC 3 cut(s) 136, 621, 702
TspDTI ATGAA 2 cut(s) 17, 209
TspGWI ACGGA 5 cut(s) 96, 375, 414, 419, 648
TspMI CCCGGG 1 cut(s) 573
TspRI CASTG 2 cut(s) 605, 662
VpaK11BI GGWCC 5 cut(s) 291, 508, 519, 570, 582
XmaI CCCGGG 1 cut(s) 573
XmaJI CCTAGG 1 cut(s) 307
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.