RLG00000003578

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014078
Physical Location & Seq
Forward (+)
50232180 .. 50233097
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003578

Sequence Viewer

Length: 918 bp
ATGGCGAGCGGGTGGGTTAAGTCGTTGCAGTGCAAGTCTAGAGCATTCGAAGACGTTTATCACCCGACTCCGAAAGCGCTGATGAACAGCGTCAGCTGCAGAAAGAGCGTTCAGAACATCAAAGACGTCGTCGTCGACACAGCCAGGCACCACCACCGTAAGTCCAGAAAGTCCAAGCTGCTTCCTCCGCCGCCGCCGCAACCGCCACCGTCGAAAAGATCCAACTCGAAATGCGACAGACCCGTAAAGCCGGAACCCGCTCCGAGCCCGGCACCTCAGCGCTCCCGGTTAAGCACCTCGACGACCCGGCCGGCCCGACCCCATGACCCGTTTCTGACGGAGCTTCCCGAGGGACACCCGTCGCGTAATGTCGTAGAGATTATCTTCCACACCAGCTGGAGCCCGAAGGAGTTTTCGGGTCGGATCGAGATGATATTCAAGGTCCAGAACGGGTCGAAGACGGTGGCACGGTTCGAGGAGTACAGGGAGGTGGTGAAGTCACGTTGCCGGGCCGGGTCGGATGGTGGTCCTAAAGTAGGATCCGAGTACGAGGAGGAGAACGCGCGGTGCGTCGCGGACGGAAACGAGGTCATGCGGTTCCACTGCCTTGGGACGCCATCTGGCAGTGGGGTTCACGACGCGTTCGGTGGCGCGTGGAGGTTTCACAGCTGCAAAGGCTCGGCCATTTGCACGTTTTCCGGTAGCGGTGTGGCCCACGAGAATGCGGGTGGGGCGAGGGGCAGGAGAGCCATGCTGGTTTGCCGGGTGGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCCAATCGTTGCTGGATGGCCGGGTCGGGTTTGACTCGGTGACTGGGGACAACGGCGAGTTGCTAGTGTTTGATCCACGCGCCGTCTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.51

Weight (kDa)

9.62

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 2 cut(s) 147, 271
AccBSI CCGCTC 2 cut(s) 9, 260
AccI GTMKAC 1 cut(s) 135
AccII CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
AclWI GGATC 5 cut(s) 213, 431, 534, 547, 866
AcoI YGGCCR 3 cut(s) 308, 681, 817
AcyI GRCGYC 2 cut(s) 126, 614
AfaI GTAC 2 cut(s) 482, 548
AfeI AGCGCT 2 cut(s) 78, 281
AfiI CCNNNNNNNGG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 7 cut(s) 96, 178, 343, 396, 669, 793, 799
AluI AGCT 7 cut(s) 96, 178, 343, 396, 669, 793, 799
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 5 cut(s) 213, 431, 534, 547, 866
Ama87I CYCGRG 1 cut(s) 347
Aor51HI AGCGCT 2 cut(s) 78, 281
AoxI GGCC 6 cut(s) 308, 312, 510, 681, 711, 817
ApeKI GCWGC 4 cut(s) 96, 178, 669, 790
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 5 cut(s) 79, 282, 565, 653, 881
AspS9I GGNCC 5 cut(s) 313, 442, 510, 527, 712
AsuC2I CCSGG 7 cut(s) 269, 286, 307, 509, 514, 764, 821
AsuHPI GGTGA 3 cut(s) 53, 505, 850
AsuII TTCGAA 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 2 cut(s) 442, 527
BamHI GGATCC 1 cut(s) 539
BanI GGYRCC 2 cut(s) 147, 271
BanII GRGCYC 3 cut(s) 269, 404, 801
BauI CACGAG 1 cut(s) 716
BbsI GAAGAC 2 cut(s) 57, 464
Bbv12I GWGCWC 1 cut(s) 801
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 4 cut(s) 83, 165, 656, 802
BccI CCATC 3 cut(s) 515, 625, 809
BceAI ACGGC 3 cut(s) 866, 868, 874
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 7 cut(s) 269, 286, 307, 509, 514, 764, 821
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 2 cut(s) 39, 863
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 2 cut(s) 80, 283
BisI GCNGC 7 cut(s) 97, 179, 191, 194, 197, 670, 791
BlsI GCNGC 7 cut(s) 98, 180, 192, 195, 198, 671, 792
Bme1390I CCNGG 8 cut(s) 145, 269, 286, 307, 509, 514, 764, 821
Bme18I GGWCC 2 cut(s) 442, 527
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 5 cut(s) 313, 442, 510, 527, 712
BmiI GGNNCC 6 cut(s) 149, 255, 273, 401, 541, 599
BmrFI CCNGG 8 cut(s) 145, 269, 286, 307, 509, 514, 764, 821
BmrI ACTGGG 1 cut(s) 852
BmuI ACTGGG 1 cut(s) 852
BoxI GACNNNNGTC 1 cut(s) 358
BpiI GAAGAC 2 cut(s) 57, 464
BpmI CTGGAG 2 cut(s) 418, 815
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 48
BpuMI CCSGG 7 cut(s) 269, 286, 307, 509, 514, 764, 821
BsaHI GRCGYC 2 cut(s) 126, 614
BsaI GGTCTC 1 cut(s) 787
BsaJI CCNNGG 2 cut(s) 348, 607
BsaWI WCCGGW 1 cut(s) 698
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 847
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 348, 607
BseGI GGATG 2 cut(s) 526, 820
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 3 cut(s) 491, 566, 569
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 83, 165, 656, 802
Bsh1236I CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 6 cut(s) 310, 314, 512, 683, 713, 819
BshNI GGYRCC 2 cut(s) 147, 271
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 347
BslFI GGGAC 3 cut(s) 366, 625, 860
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 3 cut(s) 366, 625, 860
BsmI GAATGC 2 cut(s) 44, 727
BsnI GGCC 6 cut(s) 310, 314, 512, 683, 713, 819
Bso31I GGTCTC 1 cut(s) 787
BsoBI CYCGRG 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 269, 404, 801
Bsp143I GATC 4 cut(s) 218, 423, 539, 871
BspANI GGCC 6 cut(s) 310, 314, 512, 683, 713, 819
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
BspLI GGNNCC 6 cut(s) 149, 255, 273, 401, 541, 599
BspMAI CTGCAG 1 cut(s) 101
BspPI GGATC 5 cut(s) 213, 431, 534, 547, 866
BspT104I TTCGAA 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 147, 271
BspTNI GGTCTC 1 cut(s) 787
BsrBI CCGCTC 2 cut(s) 9, 260
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 1 cut(s) 847
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 348, 607
BssMI GATC 4 cut(s) 218, 423, 539, 871
BssNI GRCGYC 2 cut(s) 126, 614
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 607
Bst2BI CACGAG 1 cut(s) 716
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 5 cut(s) 158, 210, 463, 471, 915
BstACI GRCGYC 2 cut(s) 126, 614
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 7, 312
BstDEI CTNAG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 526, 820
BstFNI CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
BstH2I RGCGCY 2 cut(s) 80, 283
BstHHI GCGC 5 cut(s) 79, 282, 565, 653, 881
BstKTI GATC 4 cut(s) 221, 426, 542, 874
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 4 cut(s) 218, 423, 539, 871
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 202, 675, 731, 796
BstNI CCWGG 1 cut(s) 145
BstPAI GACNNNNGTC 1 cut(s) 358
BstSCI CCNGG 8 cut(s) 143, 267, 284, 305, 507, 512, 762, 819
BstSFI CTRYAG 1 cut(s) 97
BstUI CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
BstV1I GCAGC 4 cut(s) 83, 165, 656, 802
BstV2I GAAGAC 2 cut(s) 57, 464
BstX2I RGATCY 2 cut(s) 218, 539
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 2 cut(s) 218, 539
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 6 cut(s) 310, 314, 512, 683, 713, 819
BtsCI GGATG 2 cut(s) 526, 820
BtsI GCAGTG 3 cut(s) 35, 601, 631
BtsIMutI CAGTG 3 cut(s) 35, 601, 631
Cac8I GCNNGC 2 cut(s) 7, 312
CfoI GCGC 5 cut(s) 79, 282, 565, 653, 881
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 5 cut(s) 313, 442, 510, 527, 712
CseI GACGC 4 cut(s) 79, 559, 622, 647
Csp6I GTAC 2 cut(s) 481, 547
CviAII CATG 3 cut(s) 323, 592, 751
CviQI GTAC 2 cut(s) 481, 547
DdeI CTNAG 1 cut(s) 276
DpnI GATC 4 cut(s) 220, 425, 541, 873
DpnII GATC 4 cut(s) 218, 423, 539, 871
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 308, 681, 817
EagI CGGCCG 1 cut(s) 308
EciI GGCGGA 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 799
EclXI CGGCCG 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 3 cut(s) 269, 404, 801
Eco31I GGTCTC 1 cut(s) 787
Eco47I GGWCC 2 cut(s) 442, 527
Eco47III AGCGCT 2 cut(s) 78, 281
Eco52I CGGCCG 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 607
EcoT38I GRGCYC 3 cut(s) 269, 404, 801
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 3 cut(s) 326, 595, 754
FaiI YATR 4 cut(s) 324, 593, 752, 909
FaqI GGGAC 3 cut(s) 366, 625, 860
FatI CATG 3 cut(s) 322, 591, 750
FauI CCCGC 4 cut(s) 2, 265, 718, 766
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 97, 179, 191, 194, 197, 670, 791
FokI GGATG 2 cut(s) 533, 827
FriOI GRGCYC 3 cut(s) 269, 404, 801
FseI GGCCGGCC 1 cut(s) 314
Fsp4HI GCNGC 7 cut(s) 97, 179, 191, 194, 197, 670, 791
FspBI CTAG 2 cut(s) 39, 863
GlaI GCGC 5 cut(s) 78, 281, 564, 652, 880
GluI GCNGC 7 cut(s) 97, 179, 191, 194, 197, 670, 791
GsuI CTGGAG 2 cut(s) 418, 815
HaeII RGCGCY 2 cut(s) 80, 283
HaeIII GGCC 6 cut(s) 310, 314, 512, 683, 713, 819
HgaI GACGC 4 cut(s) 79, 559, 622, 647
HhaI GCGC 5 cut(s) 79, 282, 565, 653, 881
Hin1I GRCGYC 2 cut(s) 126, 614
Hin1II CATG 3 cut(s) 326, 595, 754
Hin6I GCGC 5 cut(s) 77, 280, 563, 651, 879
HinP1I GCGC 5 cut(s) 77, 280, 563, 651, 879
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 67, 833
HphI GGTGA 3 cut(s) 53, 505, 850
Hpy166II GTNNAC 2 cut(s) 136, 634
Hpy188I TCNGA 7 cut(s) 72, 114, 264, 336, 423, 520, 544
Hpy188III TCNNGA 7 cut(s) 39, 165, 347, 427, 445, 635, 784
Hpy8I GTNNAC 2 cut(s) 136, 634
Hpy99I CGWCG 8 cut(s) 131, 134, 137, 214, 304, 364, 575, 641
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 5 cut(s) 158, 210, 463, 471, 915
HpyCH4IV ACGT 4 cut(s) 54, 126, 502, 692
HpyCH4V TGCA 5 cut(s) 28, 33, 99, 672, 690
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 202, 675, 731, 796
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 4 cut(s) 54, 126, 502, 692
Hsp92I GRCGYC 2 cut(s) 126, 614
Hsp92II CATG 3 cut(s) 326, 595, 754
HspAI GCGC 5 cut(s) 77, 280, 563, 651, 879
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 218, 423, 539, 871
LmnI GCTCC 6 cut(s) 265, 287, 340, 399, 796, 804
Lsp1109I GCAGC 4 cut(s) 83, 165, 656, 802
MaeI CTAG 2 cut(s) 39, 863
MaeII ACGT 4 cut(s) 54, 126, 502, 692
MaeIII GTNAC 2 cut(s) 498, 838
MalI GATC 4 cut(s) 220, 425, 541, 873
MbiI CCGCTC 2 cut(s) 9, 260
MboI GATC 4 cut(s) 218, 423, 539, 871
MboII GAAGA 3 cut(s) 62, 376, 469
MflI RGATCY 2 cut(s) 218, 539
MhlI GDGCHC 3 cut(s) 269, 404, 801
MluI ACGCGT 1 cut(s) 639
MlyI GAGTC 2 cut(s) 61, 827
MmeI TCCRAC 3 cut(s) 246, 401, 498
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 2 cut(s) 18, 290
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 4 cut(s) 96, 396, 669, 793
MspR9I CCNGG 8 cut(s) 145, 269, 286, 307, 509, 514, 764, 821
Mva1269I GAATGC 2 cut(s) 44, 727
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 7 cut(s) 364, 563, 565, 575, 641, 653, 879
MwoI GCNNNNNNNGC 8 cut(s) 96, 105, 187, 196, 202, 675, 731, 796
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 7 cut(s) 269, 286, 307, 509, 514, 764, 821
NdeII GATC 4 cut(s) 218, 423, 539, 871
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 326, 595, 754
NlaIV GGNNCC 6 cut(s) 149, 255, 273, 401, 541, 599
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 2 cut(s) 498, 838
NspV TTCGAA 1 cut(s) 48
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 567
PctI GAATGC 2 cut(s) 44, 727
PdiI GCCGGC 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 7 cut(s) 98, 180, 192, 195, 198, 671, 792
PleI GAGTC 2 cut(s) 61, 827
PpsI GAGTC 2 cut(s) 61, 827
PshAI GACNNNNGTC 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 6 cut(s) 149, 255, 273, 401, 541, 599
PspPI GGNCC 5 cut(s) 313, 442, 510, 527, 712
PstI CTGCAG 1 cut(s) 101
PsuI RGATCY 2 cut(s) 218, 539
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 4 cut(s) 96, 396, 669, 793
RigI GGCCGGCC 1 cut(s) 314
RsaI GTAC 2 cut(s) 482, 548
RsaNI GTAC 2 cut(s) 481, 547
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 801
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 18, 290
SatI GCNGC 7 cut(s) 97, 179, 191, 194, 197, 670, 791
Sau3AI GATC 4 cut(s) 218, 423, 539, 871
Sau96I GGNCC 5 cut(s) 313, 442, 510, 527, 712
SchI GAGTC 2 cut(s) 61, 827
ScrFI CCNGG 8 cut(s) 145, 269, 286, 307, 509, 514, 764, 821
SduI GDGCHC 3 cut(s) 269, 404, 801
SfcI CTRYAG 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 2 cut(s) 442, 527
SmiMI CAYNNNNRTG 1 cut(s) 720
SspMI CTAG 2 cut(s) 39, 863
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 8 cut(s) 143, 267, 284, 305, 507, 512, 762, 819
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 5 cut(s) 158, 210, 463, 471, 915
TaiI ACGT 4 cut(s) 57, 129, 505, 695
TaqI TCGA 9 cut(s) 48, 135, 212, 227, 299, 426, 455, 474, 785
TatI WGTACW 1 cut(s) 480
TauI GCSGC 3 cut(s) 193, 196, 199
Tru1I TTAA 2 cut(s) 18, 290
Tru9I TTAA 2 cut(s) 18, 290
TscAI CASTG 3 cut(s) 35, 608, 631
TseFI GTSAC 2 cut(s) 498, 838
TseI GCWGC 4 cut(s) 96, 178, 669, 790
Tsp45I GTSAC 2 cut(s) 498, 838
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 353, 594
TspRI CASTG 3 cut(s) 35, 608, 631
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 442, 527
XagI CCTNNNNNAGG 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 39, 863
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.