pycom06g06110

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014078
Physical Location & Seq
Reverse (-)
9403820 .. 9404713
894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06110.1

Sequence Viewer

Length: 894 bp
ATGGCGAGTGGGTGGGTGAAGTCGCTGCAATGCAAGTCGAGAGCGTTCGAAGACGTTTACCATCCGAACCCGAAAAATCTGATGAACAGCGCGAGTTGCAGAAAGAGCGTTCAAAACATCAAGGACGTCATGGACACTACAAAACCAAGAAAGCCGAAGCCGTCGCCTCTGCCGGGTCAGCCGCCCAAGCGGTCCAAACCGAAACACCTGGGTCGACCCACAAAACCCGAGCCCAGTTCGAGCCCGACCCAACCAGTCCGAACTCGTCAGCCGCGACCCCAGTACCCGTTCTTGTACCCGTTCTTGCCGTCATTGACGGAGCTCCCGGATGACCACCCCTCGCGCAATGTCGTTGAGATTATCTTCCACACCAGCTGGGGACCGAAGGCCTTTTCGGGTCGGATCGAGATGATTTTTAAGGTCCAGAACGGGTCGAAGACCGTTGCCCGGTTCGAGGAGTACAGGGAGGTTGTAAAGGCGCGGTCCCGGGTCGGGTCCAAAGGCGGGGCCCAGTGCGAGGAGGAGAATGCGCGGTGCGTCGCGGACGGAAACGAGGTCATGCGGTTCCACTGCCTCGGTCCCGCCAGCTCCGGCGTCGGGGTGTACGACGCTTGCAGCGGAATGTGGGGGTTTCACGGCGGAAAGGGAAGAGCGATTTGCACGTTTTCCGATAGCGGCGTGGCCCACGAGAGAGCAGGTGCTGGTGGGGCCAGGGGACGGAGGGCGATGCTGGTTTGCCGGGTCGTTGCGGGTCGGGTTTCGAAGCAGTTGGAGTTGGAGTCGTTGTTGGATGGCCGGGTCGAGTTCGACTCGGTGAGCGGAGACAGCGGCGAGTTGCTGGTGTTTGATTCACGCGCCGTGTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

32.67

Weight (kDa)

9.62

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 686
AccBSI CCGCTC 1 cut(s) 819
AccI GTMKAC 1 cut(s) 214
AccII CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 793
AcyI GRCGYC 2 cut(s) 126, 594
AfaI GTAC 4 cut(s) 284, 296, 461, 605
AfiI CCNNNNNNNGG 8 cut(s) 173, 447, 454, 492, 504, 517, 597, 717
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 2 cut(s) 207, 710
AluBI AGCT 3 cut(s) 322, 375, 588
AluI AGCT 3 cut(s) 322, 375, 588
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 816
AlwI GGATC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 2 cut(s) 227, 486
AoxI GGCC 5 cut(s) 387, 507, 681, 708, 793
ApaI GGGCCC 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 25, 615
AspLEI GCGC 5 cut(s) 92, 345, 481, 532, 857
AsuC2I CCSGG 7 cut(s) 174, 326, 448, 487, 488, 740, 797
AsuHPI GGTGA 2 cut(s) 28, 826
AsuII TTCGAA 2 cut(s) 48, 761
AvaI CYCGRG 2 cut(s) 227, 486
AvaII GGWCC 6 cut(s) 192, 380, 421, 483, 495, 578
BaeGI GKGCMC 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanII GRGCYC 4 cut(s) 234, 245, 324, 511
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 57, 443
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 12, 627
BccI CCATC 2 cut(s) 69, 785
BceAI ACGGC 5 cut(s) 145, 292, 652, 842, 850
BciT130I CCWGG 2 cut(s) 209, 712
BcnI CCSGG 7 cut(s) 174, 326, 448, 487, 488, 740, 797
BcoDI GTCTC 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 686
BisI GCNGC 6 cut(s) 26, 182, 272, 616, 676, 829
BlsI GCNGC 6 cut(s) 27, 183, 273, 617, 677, 830
Bme1390I CCNGG 9 cut(s) 174, 209, 326, 448, 487, 488, 712, 740, 797
Bme18I GGWCC 6 cut(s) 192, 380, 421, 483, 495, 578
BmeT110I CYCGRG 2 cut(s) 227, 486
BmiI GGNNCC 8 cut(s) 381, 485, 496, 508, 509, 566, 580, 709
BmrFI CCNGG 9 cut(s) 174, 209, 326, 448, 487, 488, 712, 740, 797
BmrI ACTGGG 3 cut(s) 228, 274, 505
BmsI GCATC 1 cut(s) 717
BmuI ACTGGG 3 cut(s) 228, 274, 505
BpiI GAAGAC 2 cut(s) 57, 443
BplI GAGNNNNNCTC 2 cut(s) 794, 826
Bpu14I TTCGAA 2 cut(s) 48, 761
BpuMI CCSGG 7 cut(s) 174, 326, 448, 487, 488, 740, 797
BsaHI GRCGYC 2 cut(s) 126, 594
BsaJI CCNNGG 4 cut(s) 208, 486, 574, 711
BsaXI ACNNNNNCTCC 4 cut(s) 764, 770, 794, 800
Bsc4I CCNNNNNNNGG 8 cut(s) 173, 447, 454, 492, 504, 517, 597, 717
Bse1I ACTGG 4 cut(s) 234, 254, 280, 511
Bse3DI GCAATG 2 cut(s) 35, 352
BseBI CCWGG 2 cut(s) 209, 712
BseDI CCNNGG 4 cut(s) 208, 486, 574, 711
BseGI GGATG 3 cut(s) 61, 334, 796
BseLI CCNNNNNNNGG 8 cut(s) 173, 447, 454, 492, 504, 517, 597, 717
BseMI GCAATG 2 cut(s) 35, 352
BseNI ACTGG 4 cut(s) 234, 254, 280, 511
BseRI GAGGAG 3 cut(s) 470, 533, 536
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 12, 627
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
BshFI GGCC 5 cut(s) 389, 509, 683, 710, 795
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 2 cut(s) 227, 486
BsiSI CCGG 7 cut(s) 173, 326, 448, 487, 591, 739, 796
BslFI GGGAC 4 cut(s) 393, 469, 564, 729
BslI CCNNNNNNNGG 8 cut(s) 173, 447, 454, 492, 504, 517, 597, 717
BsmAI GTCTC 1 cut(s) 816
BsmFI GGGAC 4 cut(s) 393, 469, 564, 729
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 5 cut(s) 389, 509, 683, 710, 795
BsoBI CYCGRG 2 cut(s) 227, 486
Bsp119I TTCGAA 2 cut(s) 48, 761
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 4 cut(s) 234, 245, 324, 511
Bsp143I GATC 1 cut(s) 402
BspANI GGCC 5 cut(s) 389, 509, 683, 710, 795
BspFNI CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
BspLI GGNNCC 8 cut(s) 381, 485, 496, 508, 509, 566, 580, 709
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 410
BspQI GCTCTTC 1 cut(s) 643
BspT104I TTCGAA 2 cut(s) 48, 761
BsrBI CCGCTC 1 cut(s) 819
BsrDI GCAATG 2 cut(s) 35, 352
BsrI ACTGG 4 cut(s) 234, 254, 280, 511
BssECI CCNNGG 4 cut(s) 208, 486, 574, 711
BssMI GATC 1 cut(s) 402
BssNI GRCGYC 2 cut(s) 126, 594
BssSI CACGAG 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 2 cut(s) 209, 712
Bst4CI ACNGT 2 cut(s) 442, 891
Bst6I CTCTTC 1 cut(s) 643
BstACI GRCGYC 2 cut(s) 126, 594
BstBI TTCGAA 2 cut(s) 48, 761
BstC8I GCNNGC 2 cut(s) 586, 613
BstF5I GGATG 3 cut(s) 61, 334, 796
BstFNI CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
BstHHI GCGC 5 cut(s) 92, 345, 481, 532, 857
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 6 cut(s) 96, 105, 178, 187, 707, 825
BstNI CCWGG 2 cut(s) 209, 712
BstSCI CCNGG 9 cut(s) 172, 207, 324, 446, 485, 486, 710, 738, 795
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
BstV1I GCAGC 2 cut(s) 12, 627
BstV2I GAAGAC 2 cut(s) 57, 443
BsuRI GGCC 5 cut(s) 389, 509, 683, 710, 795
BtgZI GCGATG 1 cut(s) 740
BtsCI GGATG 3 cut(s) 61, 334, 796
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 518, 568
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 586, 613
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 5 cut(s) 92, 345, 481, 532, 857
Cfr9I CCCGGG 1 cut(s) 486
CseI GACGC 3 cut(s) 526, 583, 617
Csp6I GTAC 4 cut(s) 283, 295, 460, 604
CviAII CATG 2 cut(s) 130, 559
CviQI GTAC 4 cut(s) 283, 295, 460, 604
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
EciI GGCGGA 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 389
Eco24I GRGCYC 4 cut(s) 234, 245, 324, 511
Eco47I GGWCC 6 cut(s) 192, 380, 421, 483, 495, 578
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 2 cut(s) 227, 486
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 207, 710
EcoT38I GRGCYC 4 cut(s) 234, 245, 324, 511
FaeI CATG 2 cut(s) 133, 562
FaiI YATR 3 cut(s) 131, 560, 885
FaqI GGGAC 4 cut(s) 393, 469, 564, 729
FatI CATG 2 cut(s) 129, 558
FauI CCCGC 3 cut(s) 497, 589, 742
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 6 cut(s) 26, 182, 272, 616, 676, 829
FokI GGATG 3 cut(s) 48, 341, 803
FriOI GRGCYC 4 cut(s) 234, 245, 324, 511
Fsp4HI GCNGC 6 cut(s) 26, 182, 272, 616, 676, 829
GlaI GCGC 5 cut(s) 91, 344, 480, 531, 856
GluI GCNGC 6 cut(s) 26, 182, 272, 616, 676, 829
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 5 cut(s) 389, 509, 683, 710, 795
HapII CCGG 7 cut(s) 173, 326, 448, 487, 591, 739, 796
HgaI GACGC 3 cut(s) 526, 583, 617
HhaI GCGC 5 cut(s) 92, 345, 481, 532, 857
Hin1I GRCGYC 2 cut(s) 126, 594
Hin1II CATG 2 cut(s) 133, 562
Hin6I GCGC 5 cut(s) 90, 343, 479, 530, 855
HinP1I GCGC 5 cut(s) 90, 343, 479, 530, 855
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 3 cut(s) 779, 809, 848
HpaII CCGG 7 cut(s) 173, 326, 448, 487, 591, 739, 796
HphI GGTGA 2 cut(s) 28, 826
Hpy166II GTNNAC 3 cut(s) 58, 215, 604
Hpy188I TCNGA 5 cut(s) 66, 81, 260, 402, 670
Hpy188III TCNNGA 3 cut(s) 39, 406, 424
Hpy8I GTNNAC 3 cut(s) 58, 215, 604
Hpy99I CGWCG 4 cut(s) 166, 542, 599, 611
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 442, 891
HpyCH4IV ACGT 3 cut(s) 54, 126, 662
HpyCH4V TGCA 5 cut(s) 28, 33, 99, 615, 660
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 105, 178, 187, 707, 825
HpySE526I ACGT 3 cut(s) 54, 126, 662
Hsp92I GRCGYC 2 cut(s) 126, 594
Hsp92II CATG 2 cut(s) 133, 562
HspAI GCGC 5 cut(s) 90, 343, 479, 530, 855
Kzo9I GATC 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 643
LmnI GCTCC 3 cut(s) 319, 327, 593
Lsp1109I GCAGC 2 cut(s) 12, 627
LweI GCATC 1 cut(s) 717
MaeII ACGT 3 cut(s) 54, 126, 662
MalI GATC 1 cut(s) 404
MbiI CCGCTC 1 cut(s) 819
MboI GATC 1 cut(s) 402
MboII GAAGA 4 cut(s) 62, 355, 448, 660
MhlI GDGCHC 4 cut(s) 234, 245, 324, 511
MlyI GAGTC 2 cut(s) 788, 803
MmeI TCCRAC 4 cut(s) 380, 750, 756, 768
MnlI CCTC 9 cut(s) 177, 349, 448, 460, 511, 514, 547, 584, 714
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 3 cut(s) 375, 618, 828
MspI CCGG 7 cut(s) 173, 326, 448, 487, 591, 739, 796
MspR9I CCNGG 9 cut(s) 174, 209, 326, 448, 487, 488, 712, 740, 797
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 2 cut(s) 209, 712
MvnI CGCG 7 cut(s) 92, 274, 343, 481, 532, 542, 855
MwoI GCNNNNNNNGC 6 cut(s) 96, 105, 178, 187, 707, 825
NciI CCSGG 7 cut(s) 174, 326, 448, 487, 488, 740, 797
NdeII GATC 1 cut(s) 402
NlaIII CATG 2 cut(s) 133, 562
NlaIV GGNNCC 8 cut(s) 381, 485, 496, 508, 509, 566, 580, 709
NspV TTCGAA 2 cut(s) 48, 761
PaqCI CACCTGC 1 cut(s) 686
PceI AGGCCT 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 643
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 603
PctI GAATGC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 848
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 6 cut(s) 27, 183, 273, 617, 677, 830
PleI GAGTC 2 cut(s) 787, 803
PpsI GAGTC 2 cut(s) 787, 803
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 207, 710
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 207, 710
PspN4I GGNNCC 8 cut(s) 381, 485, 496, 508, 509, 566, 580, 709
PspOMI GGGCCC 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 701
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 4 cut(s) 284, 296, 461, 605
RsaNI GTAC 4 cut(s) 283, 295, 460, 604
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 643
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 6 cut(s) 26, 182, 272, 616, 676, 829
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 2 cut(s) 788, 803
ScrFI CCNGG 9 cut(s) 174, 209, 326, 448, 487, 488, 712, 740, 797
SduI GDGCHC 4 cut(s) 234, 245, 324, 511
SfaNI GCATC 1 cut(s) 717
SfuI TTCGAA 2 cut(s) 48, 761
SinI GGWCC 6 cut(s) 192, 380, 421, 483, 495, 578
SmaI CCCGGG 1 cut(s) 488
SseBI AGGCCT 1 cut(s) 389
SstI GAGCTC 1 cut(s) 324
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 9 cut(s) 172, 207, 324, 446, 485, 486, 710, 738, 795
TaaI ACNGT 2 cut(s) 442, 891
TaiI ACGT 3 cut(s) 57, 129, 665
TaqII GACCGA 2 cut(s) 397, 566
TatI WGTACW 1 cut(s) 459
TauI GCSGC 4 cut(s) 184, 274, 678, 831
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 518, 575
TseI GCWGC 2 cut(s) 25, 615
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 3 cut(s) 332, 561, 733
TspMI CCCGGG 1 cut(s) 486
TspRI CASTG 2 cut(s) 518, 575
VpaK11BI GGWCC 6 cut(s) 192, 380, 421, 483, 495, 578
XmaI CCCGGG 1 cut(s) 486
XmiI GTMKAC 1 cut(s) 214
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.