MD04G1085800.v1.1

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014078
Physical Location & Seq
Reverse (-)
12417713 .. 12418594
882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1085800.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCGAGCGGGTGGGTGAAGTCGCTGCAATGCAAGTCGAGAGCCTTCGAAGACGTTTACCATCCGAACCCCAAAAATCTGATGAACAGCGCGAGTTGCAGGAAGAGCGTTCAAAACATCAAGGACGTCATCGACACCACAAAATCCAGAAAACCGAAGCCCTTGCCGCCGCCGGGTCCGCCGCCCAAGCGGTCCAAACCCAAACGCCTAGGGCGACCCACAAAACCCGAACGCATATCGAGCCCAACCCATCAACTCCGAACCCGGCAACCGCGACCCCATGATCCGTTTTTACCGTCCTTGACGGAGCTCCCGGAGGGCCACCCGTCGCGCAATGTCGTCGAGATTATCTTCCACACCAGCTGGGGCCCCAAGGCGTTTTCTGGACGGATCGAGATGATTTTTAAGGTCCAGAACGGGTCCAAGACCGTGGCCCGGTTTGAGGAGCACAGGGAGGTCGTGAAGGCGCGGTCCCGGGCCGGGTCCAACGGCGGGGCACAGTGCGAGGAGGAGAATGCCCGCTGCGTGGCGGACGGAAACGAGGTGATGCGGTTCCACTGCCTCGGGCCCGCCAGCTCCGGCGTCGGGGTGTACGACGCGTGCAGCGGTGTGTGGGGGTTTCACGGCGGAAAGGGTAAAGCGATTTGTACGTTTTCCGGTAGCGGCGTGGCCCACGAGAGCGCGGGTGCGGGTGGGGCCAGGGGCCGGAGAGCGATGATGGTTTGTCGGGTCGTGGCGGGTCGGGTTTCGAAGGAGCTGGAGCTTGATTCGTTGTTGGATGGCCGGGTCGGGTTCGACTCGATGAGCGGAGGCAACGGCGAGTTGCTGGTGTTTGATTCACGCGCCGTGTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

31.86

Weight (kDa)

9.81

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccBSI CCGCTC 2 cut(s) 9, 807
AccII CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
AclWI GGATC 2 cut(s) 278, 398
AcoI YGGCCR 1 cut(s) 781
AcyI GRCGYC 2 cut(s) 126, 582
AfaI GTAC 2 cut(s) 593, 649
AfiI CCNNNNNNNGG 8 cut(s) 173, 435, 442, 480, 492, 526, 585, 705
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 698
AluBI AGCT 5 cut(s) 310, 363, 576, 757, 763
AluI AGCT 5 cut(s) 310, 363, 576, 757, 763
Alw21I GWGCWC 2 cut(s) 312, 450
AlwI GGATC 2 cut(s) 278, 398
Ama87I CYCGRG 2 cut(s) 474, 563
AoxI GGCC 9 cut(s) 319, 367, 432, 477, 566, 669, 696, 703, 781
ApaI GGGCCC 2 cut(s) 371, 570
ApeKI GCWGC 3 cut(s) 25, 522, 603
AspA2I CCTAGG 1 cut(s) 208
AspLEI GCGC 5 cut(s) 92, 333, 469, 683, 845
AsuC2I CCSGG 8 cut(s) 174, 265, 314, 436, 475, 476, 481, 785
AsuHPI GGTGA 2 cut(s) 28, 556
AsuII TTCGAA 2 cut(s) 48, 749
AvaI CYCGRG 2 cut(s) 474, 563
AvaII GGWCC 6 cut(s) 176, 192, 409, 420, 471, 483
AvrII CCTAGG 1 cut(s) 208
BaeGI GKGCMC 3 cut(s) 371, 499, 570
BanII GRGCYC 4 cut(s) 245, 312, 371, 570
BauI CACGAG 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 312, 450
BbvI GCAGC 3 cut(s) 12, 509, 615
BccI CCATC 4 cut(s) 69, 258, 712, 773
BceAI ACGGC 5 cut(s) 505, 640, 830, 832, 838
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 322, 356
BciT130I CCWGG 1 cut(s) 700
BcnI CCSGG 8 cut(s) 174, 265, 314, 436, 475, 476, 481, 785
BfaI CTAG 1 cut(s) 209
BisI GCNGC 7 cut(s) 26, 167, 170, 182, 523, 604, 664
BlnI CCTAGG 1 cut(s) 208
BlsI GCNGC 7 cut(s) 27, 168, 171, 183, 524, 605, 665
Bme1390I CCNGG 9 cut(s) 174, 265, 314, 436, 475, 476, 481, 700, 785
Bme18I GGWCC 6 cut(s) 176, 192, 409, 420, 471, 483
BmeT110I CYCGRG 2 cut(s) 474, 563
BmrFI CCNGG 9 cut(s) 174, 265, 314, 436, 475, 476, 481, 700, 785
BmsI GCATC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 779
Bpu14I TTCGAA 2 cut(s) 48, 749
BpuMI CCSGG 8 cut(s) 174, 265, 314, 436, 475, 476, 481, 785
BsaHI GRCGYC 2 cut(s) 126, 582
BsaJI CCNNGG 6 cut(s) 208, 372, 429, 474, 562, 699
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 8 cut(s) 173, 435, 442, 480, 492, 526, 585, 705
Bse3DI GCAATG 2 cut(s) 35, 340
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 6 cut(s) 208, 372, 429, 474, 562, 699
BseGI GGATG 2 cut(s) 61, 784
BseLI CCNNNNNNNGG 8 cut(s) 173, 435, 442, 480, 492, 526, 585, 705
BseMI GCAATG 2 cut(s) 35, 340
BseRI GAGGAG 3 cut(s) 458, 521, 524
BseSI GKGCMC 3 cut(s) 371, 499, 570
BseXI GCAGC 3 cut(s) 12, 509, 615
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 622
Bsh1236I CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
BshFI GGCC 9 cut(s) 321, 369, 434, 479, 568, 671, 698, 705, 783
BsiHKAI GWGCWC 2 cut(s) 312, 450
BsiHKCI CYCGRG 2 cut(s) 474, 563
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 8 cut(s) 173, 435, 442, 480, 492, 526, 585, 705
BsmFI GGGAC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 9 cut(s) 321, 369, 434, 479, 568, 671, 698, 705, 783
BsoBI CYCGRG 2 cut(s) 474, 563
Bsp119I TTCGAA 2 cut(s) 48, 749
Bsp120I GGGCCC 2 cut(s) 367, 566
Bsp1286I GDGCHC 6 cut(s) 245, 312, 371, 450, 499, 570
Bsp143I GATC 2 cut(s) 283, 390
BspANI GGCC 9 cut(s) 321, 369, 434, 479, 568, 671, 698, 705, 783
BspFNI CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
BspPI GGATC 2 cut(s) 278, 398
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 48, 749
BsrBI CCGCTC 2 cut(s) 9, 807
BsrDI GCAATG 2 cut(s) 35, 340
BssECI CCNNGG 6 cut(s) 208, 372, 429, 474, 562, 699
BssMI GATC 2 cut(s) 283, 390
BssNI GRCGYC 2 cut(s) 126, 582
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 2 cut(s) 208, 372
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 4 cut(s) 297, 430, 501, 879
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 2 cut(s) 126, 582
BstBI TTCGAA 2 cut(s) 48, 749
BstC8I GCNNGC 5 cut(s) 7, 520, 570, 574, 601
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 61, 784
BstFNI CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
BstHHI GCGC 5 cut(s) 92, 333, 469, 683, 845
BstKTI GATC 2 cut(s) 286, 393
BstMBI GATC 2 cut(s) 283, 390
BstMWI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 240, 695
BstNI CCWGG 1 cut(s) 700
BstSCI CCNGG 9 cut(s) 172, 263, 312, 434, 473, 474, 479, 698, 783
BstSLI GKGCMC 3 cut(s) 371, 499, 570
BstUI CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
BstV1I GCAGC 3 cut(s) 12, 509, 615
BstV2I GAAGAC 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 430
BsuRI GGCC 9 cut(s) 321, 369, 434, 479, 568, 671, 698, 705, 783
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 728
BtsCI GGATG 2 cut(s) 61, 784
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 506, 556
Cac8I GCNNGC 5 cut(s) 7, 520, 570, 574, 601
CfoI GCGC 5 cut(s) 92, 333, 469, 683, 845
Cfr9I CCCGGG 1 cut(s) 474
CseI GACGC 2 cut(s) 571, 605
Csp6I GTAC 2 cut(s) 592, 648
CviAII CATG 1 cut(s) 281
CviQI GTAC 2 cut(s) 592, 648
DpnI GATC 2 cut(s) 285, 392
DpnII GATC 2 cut(s) 283, 390
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 3 cut(s) 168, 545, 642
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 208, 372
Eco24I GRGCYC 4 cut(s) 245, 312, 371, 570
Eco47I GGWCC 6 cut(s) 176, 192, 409, 420, 471, 483
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 2 cut(s) 474, 563
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 367, 368
EcoRII CCWGG 1 cut(s) 698
EcoT14I CCWWGG 2 cut(s) 208, 372
EcoT38I GRGCYC 4 cut(s) 245, 312, 371, 570
ErhI CCWWGG 2 cut(s) 208, 372
FaeI CATG 1 cut(s) 284
FaiI YATR 3 cut(s) 236, 282, 873
FaqI GGGAC 1 cut(s) 457
FatI CATG 1 cut(s) 280
FauI CCCGC 7 cut(s) 2, 485, 527, 577, 676, 682, 730
Fnu4HI GCNGC 7 cut(s) 26, 167, 170, 182, 523, 604, 664
FokI GGATG 2 cut(s) 48, 791
FriOI GRGCYC 4 cut(s) 245, 312, 371, 570
Fsp4HI GCNGC 7 cut(s) 26, 167, 170, 182, 523, 604, 664
FspBI CTAG 1 cut(s) 209
GlaI GCGC 5 cut(s) 91, 332, 468, 682, 844
GluI GCNGC 7 cut(s) 26, 167, 170, 182, 523, 604, 664
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 9 cut(s) 321, 369, 434, 479, 568, 671, 698, 705, 783
HgaI GACGC 2 cut(s) 571, 605
HhaI GCGC 5 cut(s) 92, 333, 469, 683, 845
Hin1I GRCGYC 2 cut(s) 126, 582
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 5 cut(s) 90, 331, 467, 681, 843
HinP1I GCGC 5 cut(s) 90, 331, 467, 681, 843
HinfI GANTC 3 cut(s) 767, 797, 836
HphI GGTGA 2 cut(s) 28, 556
Hpy166II GTNNAC 2 cut(s) 58, 592
Hpy188I TCNGA 3 cut(s) 66, 81, 260
Hpy188III TCNNGA 7 cut(s) 39, 147, 343, 384, 394, 412, 460
Hpy8I GTNNAC 2 cut(s) 58, 592
Hpy99I CGWCG 4 cut(s) 331, 344, 587, 599
HpyAV CCTTC 3 cut(s) 55, 457, 745
HpyCH4III ACNGT 4 cut(s) 297, 430, 501, 879
HpyCH4IV ACGT 3 cut(s) 54, 126, 650
HpyCH4V TGCA 4 cut(s) 28, 33, 99, 603
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 240, 695
HpySE526I ACGT 3 cut(s) 54, 126, 650
Hsp92I GRCGYC 2 cut(s) 126, 582
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 5 cut(s) 90, 331, 467, 681, 843
Kzo9I GATC 2 cut(s) 283, 390
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 6 cut(s) 307, 315, 445, 581, 754, 760
Lsp1109I GCAGC 3 cut(s) 12, 509, 615
LweI GCATC 1 cut(s) 537
MaeI CTAG 1 cut(s) 209
MaeII ACGT 3 cut(s) 54, 126, 650
MalI GATC 2 cut(s) 285, 392
MbiI CCGCTC 2 cut(s) 9, 807
MboI GATC 2 cut(s) 283, 390
MboII GAAGA 3 cut(s) 62, 115, 343
MhlI GDGCHC 6 cut(s) 245, 312, 371, 450, 499, 570
MluI ACGCGT 1 cut(s) 597
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 2 cut(s) 510, 756
MnlI CCTC 8 cut(s) 310, 436, 448, 499, 502, 535, 572, 803
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 3 cut(s) 363, 522, 606
MspR9I CCNGG 9 cut(s) 174, 265, 314, 436, 475, 476, 481, 700, 785
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 700
MvnI CGCG 7 cut(s) 92, 274, 331, 469, 599, 683, 843
MwoI GCNNNNNNNGC 7 cut(s) 96, 105, 166, 178, 187, 240, 695
NciI CCSGG 8 cut(s) 174, 265, 314, 436, 475, 476, 481, 785
NdeII GATC 2 cut(s) 283, 390
NlaIII CATG 1 cut(s) 284
NspV TTCGAA 2 cut(s) 48, 749
PciSI GCTCTTC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 591
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 2 cut(s) 767, 836
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 7 cut(s) 27, 168, 171, 183, 524, 605, 665
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 698
PspOMI GGGCCC 2 cut(s) 367, 566
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 2 cut(s) 593, 649
RsaNI GTAC 2 cut(s) 592, 648
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 7 cut(s) 26, 167, 170, 182, 523, 604, 664
Sau3AI GATC 2 cut(s) 283, 390
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 9 cut(s) 174, 265, 314, 436, 475, 476, 481, 700, 785
SduI GDGCHC 6 cut(s) 245, 312, 371, 450, 499, 570
SfaNI GCATC 1 cut(s) 537
SfuI TTCGAA 2 cut(s) 48, 749
SinI GGWCC 6 cut(s) 176, 192, 409, 420, 471, 483
SmaI CCCGGG 1 cut(s) 476
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 9 cut(s) 172, 263, 312, 434, 473, 474, 479, 698, 783
StyI CCWWGG 2 cut(s) 208, 372
TaaI ACNGT 4 cut(s) 297, 430, 501, 879
TaiI ACGT 3 cut(s) 57, 129, 653
TaqI TCGA 9 cut(s) 38, 48, 132, 239, 342, 393, 749, 795, 800
TauI GCSGC 4 cut(s) 169, 172, 184, 666
TfiI GAWTC 2 cut(s) 767, 836
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 506, 563
TseI GCWGC 3 cut(s) 25, 522, 603
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 4 cut(s) 276, 320, 403, 549
TspMI CCCGGG 1 cut(s) 474
TspRI CASTG 2 cut(s) 506, 563
VpaK11BI GGWCC 6 cut(s) 176, 192, 409, 420, 471, 483
XmaI CCCGGG 1 cut(s) 474
XmaJI CCTAGG 1 cut(s) 208
XspI CTAG 1 cut(s) 209
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.