Rh7CG211400

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014078
Physical Location & Seq
Reverse (-)
19051464 .. 19052980
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG211400.1

Sequence Viewer

Length: 915 bp
ATGGCGAGCGGGTGGGTTAAGTCGTTGCAGTGCAAGTCTAGAGCATTCGAAGACGTCTTTCAACCGACCCCGAAAGCGCTGATGAACAGCGTCAGCTGCAGAAAGAGCGTTCAAAACATCAAGGACGTCGTCGTCGACACAGCCAAGCACCGCCACCATAAGTCCAGAAAGTCCAAGCTGCTTCCTTCGCCGCCGCAACAGCCACCTTCGAAAAGATCCAACTCGAAATGCGACAGACCCGTAAAGCCCGAACCCGCTCCGAGCCCAGCACCTCAGTGCTCCCGGTTAAGCGCCTCGACGACCCGGCCGGCCCGACCCCACGACCCGTTTCTGACGGAGCTTCCCGAGGGACACCCGTCGCGTAATGTCGTAGAGATTATCTTCCACACCAGCTGGAGCCCCAAGGCGTTTTCGGGTCGGATCGAGATGATATTCAAGGTCCAGAACGGGTCGAAGACGGTGGCGCGGTTCGAGGAGTATAGGGAGGTGGTGAAGTCTCGTTCCCGGGCCGGGTCGGATGGTGGTCCGAAAGTTGGATCCGAGTACGAGGAGGAGAATGCGCGGTGCGTCGCGGACGGAAATGAGGTCATGCGGTTCCACTGCCTTGGGACGCCATCTGGCAGTGGGGTTCACGACGCGTTCGGTGGCGCGTGGAGGTTTCACAGAGGCAAAGGCTCGGCCATTTGCACGTTTTCCGGTAGTGGTGTGGCCCACGAGAATGCGGGTGGGGCGAGGGGCAGGAGAGCCATGCTGGTTTGCCGGGTGGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCCAATCGTTGCTGGATGGCCGGGTCGGGTTTGACTCGGTGAGTGGGGACAACGGCGAGTTGCTAGTGTTTGATCCACGCGCCGTCTTGCCGTGCTTTCTTATCATCTATAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

33.23

Weight (kDa)

9.75

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 2 cut(s) 57, 129
AccBSI CCGCTC 2 cut(s) 9, 257
AccI GTMKAC 1 cut(s) 135
AccII CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
AclWI GGATC 5 cut(s) 210, 428, 531, 544, 863
AcoI YGGCCR 3 cut(s) 305, 678, 814
AcyI GRCGYC 3 cut(s) 54, 126, 611
AfaI GTAC 1 cut(s) 545
AfeI AGCGCT 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 510, 533
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 62, 113, 436
AleI CACNNNNGTG 1 cut(s) 274
AluBI AGCT 6 cut(s) 96, 178, 340, 393, 790, 796
AluI AGCT 6 cut(s) 96, 178, 340, 393, 790, 796
Alw21I GWGCWC 2 cut(s) 281, 798
Alw26I GTCTC 2 cut(s) 501, 784
AlwI GGATC 5 cut(s) 210, 428, 531, 544, 863
Ama87I CYCGRG 2 cut(s) 344, 504
Aor51HI AGCGCT 1 cut(s) 78
AoxI GGCC 6 cut(s) 305, 309, 507, 678, 708, 814
ApeKI GCWGC 3 cut(s) 96, 178, 787
AspLEI GCGC 6 cut(s) 79, 293, 466, 562, 650, 878
AspS9I GGNCC 5 cut(s) 310, 439, 507, 524, 709
AsuC2I CCSGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
AsuHPI GGTGA 2 cut(s) 502, 847
AsuII TTCGAA 2 cut(s) 48, 209
AvaI CYCGRG 2 cut(s) 344, 504
AvaII GGWCC 2 cut(s) 439, 524
BamHI GGATCC 1 cut(s) 536
BanII GRGCYC 3 cut(s) 266, 401, 798
BauI CACGAG 1 cut(s) 713
BbsI GAAGAC 2 cut(s) 57, 461
Bbv12I GWGCWC 2 cut(s) 281, 798
BbvI GCAGC 3 cut(s) 83, 165, 799
BccI CCATC 3 cut(s) 512, 622, 806
BceAI ACGGC 3 cut(s) 863, 865, 871
BcnI CCSGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
BcoDI GTCTC 2 cut(s) 501, 784
BfaI CTAG 2 cut(s) 39, 860
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 2 cut(s) 80, 294
BisI GCNGC 5 cut(s) 97, 179, 191, 194, 788
BlsI GCNGC 5 cut(s) 98, 180, 192, 195, 789
Bme1390I CCNGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
Bme18I GGWCC 2 cut(s) 439, 524
BmeT110I CYCGRG 2 cut(s) 344, 504
BmgT120I GGNCC 5 cut(s) 310, 439, 507, 524, 709
BmiI GGNNCC 3 cut(s) 398, 538, 596
BmrFI CCNGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
BoxI GACNNNNGTC 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 57, 461
BpmI CTGGAG 2 cut(s) 415, 812
Bpu14I TTCGAA 2 cut(s) 48, 209
BpuMI CCSGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
BsaHI GRCGYC 3 cut(s) 54, 126, 611
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 4 cut(s) 345, 402, 504, 604
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 533
Bse118I RCCGGY 1 cut(s) 307
BseDI CCNNGG 4 cut(s) 345, 402, 504, 604
BseGI GGATG 2 cut(s) 523, 817
BseLI CCNNNNNNNGG 2 cut(s) 510, 533
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 3 cut(s) 488, 563, 566
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 3 cut(s) 83, 165, 799
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 307, 311, 509, 680, 710, 816
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 281, 798
BsiHKCI CYCGRG 2 cut(s) 344, 504
BsiSI CCGG 8 cut(s) 283, 304, 308, 505, 510, 696, 760, 817
BslFI GGGAC 3 cut(s) 363, 622, 857
BslI CCNNNNNNNGG 2 cut(s) 510, 533
BsmAI GTCTC 2 cut(s) 501, 784
BsmFI GGGAC 3 cut(s) 363, 622, 857
BsmI GAATGC 3 cut(s) 44, 562, 724
BsnI GGCC 6 cut(s) 307, 311, 509, 680, 710, 816
Bso31I GGTCTC 1 cut(s) 784
BsoBI CYCGRG 2 cut(s) 344, 504
Bsp119I TTCGAA 2 cut(s) 48, 209
Bsp1286I GDGCHC 4 cut(s) 266, 281, 401, 798
Bsp143I GATC 4 cut(s) 215, 420, 536, 868
BspANI GGCC 6 cut(s) 307, 311, 509, 680, 710, 816
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
BspLI GGNNCC 3 cut(s) 398, 538, 596
BspMAI CTGCAG 1 cut(s) 101
BspPI GGATC 5 cut(s) 210, 428, 531, 544, 863
BspT104I TTCGAA 2 cut(s) 48, 209
BspTNI GGTCTC 1 cut(s) 784
BsrBI CCGCTC 2 cut(s) 9, 257
BsrFI RCCGGY 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 4 cut(s) 345, 402, 504, 604
BssMI GATC 4 cut(s) 215, 420, 536, 868
BssNI GRCGYC 3 cut(s) 54, 126, 611
BssSI CACGAG 1 cut(s) 713
BssT1I CCWWGG 2 cut(s) 402, 604
Bst2BI CACGAG 1 cut(s) 713
Bst4CI ACNGT 2 cut(s) 460, 912
BstACI GRCGYC 3 cut(s) 54, 126, 611
BstBI TTCGAA 2 cut(s) 48, 209
BstC8I GCNNGC 2 cut(s) 7, 309
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 523, 817
BstFNI CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
BstH2I RGCGCY 2 cut(s) 80, 294
BstHHI GCGC 6 cut(s) 79, 293, 466, 562, 650, 878
BstKTI GATC 4 cut(s) 218, 423, 539, 871
BstMAI GTCTC 2 cut(s) 501, 784
BstMBI GATC 4 cut(s) 215, 420, 536, 868
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 6 cut(s) 96, 105, 187, 199, 728, 793
BstPAI GACNNNNGTC 1 cut(s) 355
BstSCI CCNGG 7 cut(s) 281, 302, 503, 504, 509, 759, 816
BstSFI CTRYAG 1 cut(s) 97
BstUI CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
BstV1I GCAGC 3 cut(s) 83, 165, 799
BstV2I GAAGAC 2 cut(s) 57, 461
BstX2I RGATCY 2 cut(s) 215, 536
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 2 cut(s) 215, 536
BstZI CGGCCG 1 cut(s) 305
BsuRI GGCC 6 cut(s) 307, 311, 509, 680, 710, 816
BtsCI GGATG 2 cut(s) 523, 817
BtsI GCAGTG 3 cut(s) 35, 598, 628
BtsIMutI CAGTG 4 cut(s) 35, 281, 598, 628
Cac8I GCNNGC 2 cut(s) 7, 309
CfoI GCGC 6 cut(s) 79, 293, 466, 562, 650, 878
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 5 cut(s) 310, 439, 507, 524, 709
Cfr9I CCCGGG 1 cut(s) 504
CseI GACGC 4 cut(s) 79, 556, 619, 644
Csp6I GTAC 1 cut(s) 544
CviAII CATG 2 cut(s) 589, 748
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 1 cut(s) 273
DpnI GATC 4 cut(s) 217, 422, 538, 870
DpnII GATC 4 cut(s) 215, 420, 536, 868
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 305, 678, 814
EagI CGGCCG 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 796
EclXI CGGCCG 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 402, 604
Eco24I GRGCYC 3 cut(s) 266, 401, 798
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 439, 524
Eco47III AGCGCT 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 796
Eco88I CYCGRG 2 cut(s) 344, 504
EcoICRI GAGCTC 1 cut(s) 796
EcoT14I CCWWGG 2 cut(s) 402, 604
EcoT38I GRGCYC 3 cut(s) 266, 401, 798
ErhI CCWWGG 2 cut(s) 402, 604
FaeI CATG 2 cut(s) 592, 751
FaiI YATR 5 cut(s) 159, 480, 590, 749, 906
FaqI GGGAC 3 cut(s) 363, 622, 857
FatI CATG 2 cut(s) 588, 747
FauI CCCGC 4 cut(s) 2, 262, 715, 763
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 97, 179, 191, 194, 788
FokI GGATG 2 cut(s) 530, 824
FriOI GRGCYC 3 cut(s) 266, 401, 798
FseI GGCCGGCC 1 cut(s) 311
Fsp4HI GCNGC 5 cut(s) 97, 179, 191, 194, 788
FspBI CTAG 2 cut(s) 39, 860
GlaI GCGC 6 cut(s) 78, 292, 465, 561, 649, 877
GluI GCNGC 5 cut(s) 97, 179, 191, 194, 788
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 2 cut(s) 415, 812
HaeII RGCGCY 2 cut(s) 80, 294
HaeIII GGCC 6 cut(s) 307, 311, 509, 680, 710, 816
HapII CCGG 8 cut(s) 283, 304, 308, 505, 510, 696, 760, 817
HgaI GACGC 4 cut(s) 79, 556, 619, 644
HhaI GCGC 6 cut(s) 79, 293, 466, 562, 650, 878
Hin1I GRCGYC 3 cut(s) 54, 126, 611
Hin1II CATG 2 cut(s) 592, 751
Hin6I GCGC 6 cut(s) 77, 291, 464, 560, 648, 876
HinP1I GCGC 6 cut(s) 77, 291, 464, 560, 648, 876
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 830
HpaII CCGG 8 cut(s) 283, 304, 308, 505, 510, 696, 760, 817
HphI GGTGA 2 cut(s) 502, 847
Hpy166II GTNNAC 2 cut(s) 136, 631
Hpy188I TCNGA 6 cut(s) 261, 333, 420, 517, 528, 541
Hpy188III TCNNGA 7 cut(s) 39, 165, 344, 424, 442, 632, 781
Hpy8I GTNNAC 2 cut(s) 136, 631
Hpy99I CGWCG 7 cut(s) 131, 134, 137, 301, 361, 572, 638
HpyAV CCTTC 2 cut(s) 195, 216
HpyCH4III ACNGT 2 cut(s) 460, 912
HpyCH4IV ACGT 3 cut(s) 54, 126, 689
HpyCH4V TGCA 4 cut(s) 28, 33, 99, 687
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 105, 187, 199, 728, 793
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 3 cut(s) 54, 126, 689
Hsp92I GRCGYC 3 cut(s) 54, 126, 611
Hsp92II CATG 2 cut(s) 592, 751
HspAI GCGC 6 cut(s) 77, 291, 464, 560, 648, 876
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 215, 420, 536, 868
LmnI GCTCC 6 cut(s) 262, 284, 337, 396, 793, 801
Lsp1109I GCAGC 3 cut(s) 83, 165, 799
MaeI CTAG 2 cut(s) 39, 860
MaeII ACGT 3 cut(s) 54, 126, 689
MalI GATC 4 cut(s) 217, 422, 538, 870
MbiI CCGCTC 2 cut(s) 9, 257
MboI GATC 4 cut(s) 215, 420, 536, 868
MboII GAAGA 3 cut(s) 62, 373, 466
MflI RGATCY 2 cut(s) 215, 536
MhlI GDGCHC 4 cut(s) 266, 281, 401, 798
MluI ACGCGT 1 cut(s) 636
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 4 cut(s) 243, 398, 495, 514
MroNI GCCGGC 1 cut(s) 307
MseI TTAA 2 cut(s) 18, 287
MslI CAYNNNNRTG 2 cut(s) 274, 717
MspA1I CMGCKG 3 cut(s) 96, 393, 790
MspI CCGG 8 cut(s) 283, 304, 308, 505, 510, 696, 760, 817
MspR9I CCNGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
Mva1269I GAATGC 3 cut(s) 44, 562, 724
MvnI CGCG 7 cut(s) 361, 466, 562, 572, 638, 650, 876
MwoI GCNNNNNNNGC 6 cut(s) 96, 105, 187, 199, 728, 793
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
NdeII GATC 4 cut(s) 215, 420, 536, 868
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 592, 751
NlaIV GGNNCC 3 cut(s) 398, 538, 596
NmeAIII GCCGAG 1 cut(s) 656
NspV TTCGAA 2 cut(s) 48, 209
OliI CACNNNNGTG 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 3 cut(s) 44, 562, 724
PdiI GCCGGC 1 cut(s) 309
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 5 cut(s) 98, 180, 192, 195, 789
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
PshAI GACNNNNGTC 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 798
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 398, 538, 596
PspPI GGNCC 5 cut(s) 310, 439, 507, 524, 709
PstI CTGCAG 1 cut(s) 101
PsuI RGATCY 2 cut(s) 215, 536
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 3 cut(s) 96, 393, 790
RigI GGCCGGCC 1 cut(s) 311
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 2 cut(s) 274, 717
SacI GAGCTC 1 cut(s) 798
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 18, 287
SatI GCNGC 5 cut(s) 97, 179, 191, 194, 788
Sau3AI GATC 4 cut(s) 215, 420, 536, 868
Sau96I GGNCC 5 cut(s) 310, 439, 507, 524, 709
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 7 cut(s) 283, 304, 505, 506, 511, 761, 818
SduI GDGCHC 4 cut(s) 266, 281, 401, 798
SfcI CTRYAG 1 cut(s) 97
SfuI TTCGAA 2 cut(s) 48, 209
SinI GGWCC 2 cut(s) 439, 524
SmaI CCCGGG 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 274, 717
SspMI CTAG 2 cut(s) 39, 860
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 7 cut(s) 281, 302, 503, 504, 509, 759, 816
StyI CCWWGG 2 cut(s) 402, 604
TaaI ACNGT 2 cut(s) 460, 912
TaiI ACGT 3 cut(s) 57, 129, 692
TaqI TCGA 9 cut(s) 48, 135, 209, 224, 296, 423, 452, 471, 782
TauI GCSGC 2 cut(s) 193, 196
Tru1I TTAA 2 cut(s) 18, 287
Tru9I TTAA 2 cut(s) 18, 287
TscAI CASTG 4 cut(s) 35, 281, 605, 628
TseI GCWGC 3 cut(s) 96, 178, 787
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 350, 591
TspMI CCCGGG 1 cut(s) 504
TspRI CASTG 4 cut(s) 35, 281, 605, 628
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 439, 524
XbaI TCTAGA 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 39, 860
ZraI GACGTC 2 cut(s) 55, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.