FvH4_5g00180

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014078
Physical Location & Seq
Forward (+)
129823 .. 131063
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00180.t1

Sequence Viewer

Length: 906 bp
ATGGCGAGCGGATGGGTCAAGTCGTTGCAGTGCAAGTCTAGGGCATTCGATGACGTGTATCACCCCAGCCCCAAAACAACGCTGATGAACAGCGTCAGCTGCAGAAAGAGCTTTCAGAACATCAAAGACGTCGTCGTCGACACAGCAGCCGCCAAGCACCACCACGATAAGCCCACAAAATCCAAGCCGCCTCCGTCGAAAAGACACGGGAAGCCAGAACCCGCTTTTCCGAGCCCAGCACCTCGTACCCGGCCGCCCCGAACCCACGACCCGTTTCTGACTGAGCTCCCCGAGGGCCACCCGTCGCGCAATGTCGTAGAGATTATCTTCCACACCAGCTGGAGCCCCAAGGCGTTTTCGGGTCGGATCGAGATGATATTCAAGGTCCAGAACGGCTCCAAGACGGTGGCGCGGTTCGAGGAGTATAGGGAAGTCGTCAAGTCTCGTTCCCGGGCCGGGTCGGACGCTGGATCCCGGAAAGTGGGATCCGAGTTCGAGGAGGAGAATGCGCGGTGCGTCGCCGACGGAAACGAGGTCATGCGTTTCCACTGCCTGGGGACACCATCTGGCACTGGGGTTCACGACGCGTTCGGTGGCGCGTGGGGCTTCCACAGAGGCAAAGGCTCCGCCATTTGCACGTTTTCCGGTAGCGGTGTGGCCCACGAGAATGCGGGCGGGGCGAGGGGCAGGAGAGCCATGCTGGTTTGCCGGGTCGTTGCGGGTCGGGTCTCGAAGCAGCTGGAGCTCCAATCGTTGCTGGATGGCCGGCTTGGGTTTGACTCAGTGAGTGGAGACAACGGGGAGTTGCTAGTGTTTGATCCACGCGCCGTCTTGCCGTGCTTTCTTATCATCTATAAATTGTGGTTCATGTTTATAATTGGAGCTATGATGCTAGCAAAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

32.98

Weight (kDa)

9.66

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62520
fragaria_vesca FvH4_5g00180
malus_domestica MD04G1085800.v1.1 MD06G1062500.v1.1
prunus_persica Prupe.5G073900_v2.0.a1
pyrus_communis pycom04g07690 pycom06g06110
rosa_chinensis RchiOBHm_Chr7g0202691
rosa_laevigata RLG00000003578
rosa_multiflora Rmu_sc0002365.1_g000005
rosa_roxburghii Rroxscaffold_3G00254390
rosa_rugosa Rorug07G0072100
rosa_samantha Rh7AG199900 Rh7BG200600 Rh7CG211400 Rh7DG206800
rosa_wichuraiana Rw7G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 875
AasI GACNNNNNNGTC 1 cut(s) 134
AatII GACGTC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 138
AccII CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
AclWI GGATC 6 cut(s) 374, 465, 478, 480, 493, 812
AcoI YGGCCR 2 cut(s) 251, 763
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 3 cut(s) 456, 481, 553
AflIII ACRYGT 2 cut(s) 54, 585
AgsI TTSAA 1 cut(s) 382
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 7 cut(s) 99, 111, 286, 339, 739, 745, 884
AluI AGCT 7 cut(s) 99, 111, 286, 339, 739, 745, 884
Alw21I GWGCWC 2 cut(s) 288, 747
Alw26I GTCTC 3 cut(s) 447, 733, 786
AlwI GGATC 6 cut(s) 374, 465, 478, 480, 493, 812
Ama87I CYCGRG 2 cut(s) 290, 450
AoxI GGCC 5 cut(s) 251, 295, 453, 657, 763
ApeKI GCWGC 3 cut(s) 99, 146, 736
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 5 cut(s) 309, 412, 511, 599, 827
AspS9I GGNCC 4 cut(s) 295, 385, 453, 658
AsuC2I CCSGG 6 cut(s) 250, 451, 452, 457, 475, 710
AsuHPI GGTGA 1 cut(s) 53
AsuNHI GCTAGC 1 cut(s) 892
AvaI CYCGRG 2 cut(s) 290, 450
AvaII GGWCC 1 cut(s) 385
BamHI GGATCC 2 cut(s) 470, 485
BanII GRGCYC 4 cut(s) 236, 288, 347, 747
BauI CACGAG 1 cut(s) 662
Bbv12I GWGCWC 2 cut(s) 288, 747
BbvI GCAGC 3 cut(s) 86, 158, 748
BccI CCATC 3 cut(s) 6, 571, 755
BceAI ACGGC 3 cut(s) 409, 812, 820
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 6 cut(s) 250, 451, 452, 457, 475, 710
BcoDI GTCTC 3 cut(s) 447, 733, 786
BfaI CTAG 3 cut(s) 39, 809, 893
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 6 cut(s) 100, 147, 150, 188, 254, 737
BlsI GCNGC 6 cut(s) 101, 148, 151, 189, 255, 738
Bme1390I CCNGG 7 cut(s) 250, 451, 452, 457, 475, 554, 710
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 2 cut(s) 290, 450
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 4 cut(s) 295, 385, 453, 658
BmiI GGNNCC 5 cut(s) 344, 397, 472, 487, 625
BmrFI CCNGG 7 cut(s) 250, 451, 452, 457, 475, 554, 710
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 879
BmtI GCTAGC 1 cut(s) 896
BmuI ACTGGG 1 cut(s) 582
BpmI CTGGAG 2 cut(s) 361, 761
BpuMI CCSGG 6 cut(s) 250, 451, 452, 457, 475, 710
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 4 cut(s) 291, 348, 450, 553
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 481, 553
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 4 cut(s) 291, 348, 450, 553
BseGI GGATG 2 cut(s) 17, 766
BseLI CCNNNNNNNGG 3 cut(s) 456, 481, 553
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 273, 795
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 3 cut(s) 434, 512, 515
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 3 cut(s) 86, 158, 748
BseYI CCCAGC 2 cut(s) 65, 235
Bsh1236I CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 5 cut(s) 253, 297, 455, 659, 765
BsiEI CGRYCG 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 288, 747
BsiHKCI CYCGRG 2 cut(s) 290, 450
BsiSI CCGG 7 cut(s) 250, 451, 456, 475, 645, 709, 766
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 3 cut(s) 456, 481, 553
BsmAI GTCTC 3 cut(s) 447, 733, 786
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 3 cut(s) 44, 511, 673
BsnI GGCC 5 cut(s) 253, 297, 455, 659, 765
Bso31I GGTCTC 1 cut(s) 733
BsoBI CYCGRG 2 cut(s) 290, 450
Bsp1286I GDGCHC 4 cut(s) 236, 288, 347, 747
Bsp143I GATC 4 cut(s) 366, 470, 485, 817
BspANI GGCC 5 cut(s) 253, 297, 455, 659, 765
BspCNI CTCAG 2 cut(s) 274, 794
BspFNI CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
BspLI GGNNCC 5 cut(s) 344, 397, 472, 487, 625
BspMAI CTGCAG 1 cut(s) 104
BspOI GCTAGC 1 cut(s) 896
BspPI GGATC 6 cut(s) 374, 465, 478, 480, 493, 812
BspTNI GGTCTC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 765
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 4 cut(s) 291, 348, 450, 553
BssMI GATC 4 cut(s) 366, 470, 485, 817
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 662
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 406
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 7, 673, 767, 894
BstDEI CTNAG 2 cut(s) 282, 781
BstF5I GGATG 2 cut(s) 17, 766
BstFNI CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
BstHHI GCGC 5 cut(s) 309, 412, 511, 599, 827
BstKTI GATC 4 cut(s) 369, 473, 488, 820
BstMAI GTCTC 3 cut(s) 447, 733, 786
BstMBI GATC 4 cut(s) 366, 470, 485, 817
BstMCI CGRYCG 1 cut(s) 254
BstMWI GCNNNNNNNGC 5 cut(s) 99, 108, 603, 677, 742
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 7 cut(s) 248, 449, 450, 455, 473, 552, 708
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
BstV1I GCAGC 3 cut(s) 86, 158, 748
BstX2I RGATCY 2 cut(s) 470, 485
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 2 cut(s) 470, 485
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 5 cut(s) 253, 297, 455, 659, 765
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 17, 766
BtsI GCAGTG 2 cut(s) 35, 547
BtsIMutI CAGTG 4 cut(s) 35, 547, 570, 789
Cac8I GCNNGC 4 cut(s) 7, 673, 767, 894
CfoI GCGC 5 cut(s) 309, 412, 511, 599, 827
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 4 cut(s) 295, 385, 453, 658
Cfr9I CCCGGG 1 cut(s) 450
CseI GACGC 4 cut(s) 82, 473, 505, 593
Csp6I GTAC 1 cut(s) 246
CviAII CATG 3 cut(s) 538, 697, 868
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 282, 781
DpnI GATC 4 cut(s) 368, 472, 487, 819
DpnII GATC 4 cut(s) 366, 470, 485, 817
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 251, 763
EagI CGGCCG 1 cut(s) 251
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 2 cut(s) 286, 745
EclXI CGGCCG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 4 cut(s) 236, 288, 347, 747
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 251
Eco53kI GAGCTC 2 cut(s) 286, 745
Eco88I CYCGRG 2 cut(s) 290, 450
EcoICRI GAGCTC 2 cut(s) 286, 745
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 4 cut(s) 236, 288, 347, 747
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 541, 700, 871
FaiI YATR 7 cut(s) 426, 539, 698, 855, 869, 875, 887
FaqI GGGAC 1 cut(s) 571
FatI CATG 3 cut(s) 537, 696, 867
FauI CCCGC 4 cut(s) 229, 664, 668, 712
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 100, 147, 150, 188, 254, 737
FokI GGATG 2 cut(s) 24, 773
FriOI GRGCYC 4 cut(s) 236, 288, 347, 747
Fsp4HI GCNGC 6 cut(s) 100, 147, 150, 188, 254, 737
FspBI CTAG 3 cut(s) 39, 809, 893
GlaI GCGC 5 cut(s) 308, 411, 510, 598, 826
GluI GCNGC 6 cut(s) 100, 147, 150, 188, 254, 737
GsaI CCCAGC 2 cut(s) 69, 239
GsuI CTGGAG 2 cut(s) 361, 761
HaeIII GGCC 5 cut(s) 253, 297, 455, 659, 765
HapII CCGG 7 cut(s) 250, 451, 456, 475, 645, 709, 766
HgaI GACGC 4 cut(s) 82, 473, 505, 593
HhaI GCGC 5 cut(s) 309, 412, 511, 599, 827
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 541, 700, 871
Hin6I GCGC 5 cut(s) 307, 410, 509, 597, 825
HinP1I GCGC 5 cut(s) 307, 410, 509, 597, 825
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 779
HpaII CCGG 7 cut(s) 250, 451, 456, 475, 645, 709, 766
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 139, 580
Hpy188I TCNGA 6 cut(s) 117, 231, 279, 366, 463, 490
Hpy188III TCNNGA 4 cut(s) 370, 388, 581, 730
Hpy8I GTNNAC 2 cut(s) 139, 580
Hpy99I CGWCG 8 cut(s) 134, 137, 140, 199, 307, 521, 527, 587
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 3 cut(s) 54, 129, 638
HpyCH4V TGCA 4 cut(s) 28, 33, 102, 636
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 108, 603, 677, 742
HpyF3I CTNAG 2 cut(s) 282, 781
HpySE526I ACGT 3 cut(s) 54, 129, 638
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 541, 700, 871
HspAI GCGC 5 cut(s) 307, 410, 509, 597, 825
KroI GCCGGC 1 cut(s) 765
KroNI GCCGGC 1 cut(s) 767
Kzo9I GATC 4 cut(s) 366, 470, 485, 817
LmnI GCTCC 7 cut(s) 291, 342, 401, 629, 742, 750, 881
Lsp1109I GCAGC 3 cut(s) 86, 158, 748
LweI GCATC 1 cut(s) 879
MaeI CTAG 3 cut(s) 39, 809, 893
MaeII ACGT 3 cut(s) 54, 129, 638
MalI GATC 4 cut(s) 368, 472, 487, 819
MbiI CCGCTC 1 cut(s) 9
MboI GATC 4 cut(s) 366, 470, 485, 817
MboII GAAGA 1 cut(s) 319
MflI RGATCY 2 cut(s) 470, 485
MhlI GDGCHC 4 cut(s) 236, 288, 347, 747
MluCI AATT 2 cut(s) 857, 876
MluI ACGCGT 1 cut(s) 585
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 2 cut(s) 344, 441
MnlI CCTC 9 cut(s) 201, 252, 286, 412, 490, 493, 526, 608, 675
MroNI GCCGGC 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 3 cut(s) 99, 339, 739
MspI CCGG 7 cut(s) 250, 451, 456, 475, 645, 709, 766
MspR9I CCNGG 7 cut(s) 250, 451, 452, 457, 475, 554, 710
Mva1269I GAATGC 3 cut(s) 44, 511, 673
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 6 cut(s) 307, 412, 511, 587, 599, 825
MwoI GCNNNNNNNGC 5 cut(s) 99, 108, 603, 677, 742
NaeI GCCGGC 1 cut(s) 767
NciI CCSGG 6 cut(s) 250, 451, 452, 457, 475, 710
NdeII GATC 4 cut(s) 366, 470, 485, 817
NgoMIV GCCGGC 1 cut(s) 765
NheI GCTAGC 1 cut(s) 892
NlaIII CATG 3 cut(s) 541, 700, 871
NlaIV GGNNCC 5 cut(s) 344, 397, 472, 487, 625
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 3 cut(s) 44, 511, 673
PdiI GCCGGC 1 cut(s) 767
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 473
PkrI GCNGC 6 cut(s) 101, 148, 151, 189, 255, 738
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PsiI TTATAA 1 cut(s) 875
Psp124BI GAGCTC 2 cut(s) 288, 747
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 2 cut(s) 65, 235
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 5 cut(s) 344, 397, 472, 487, 625
PspPI GGNCC 4 cut(s) 295, 385, 453, 658
PstI CTGCAG 1 cut(s) 104
PsuI RGATCY 2 cut(s) 470, 485
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 3 cut(s) 99, 339, 739
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 2 cut(s) 288, 747
SalI GTCGAC 1 cut(s) 137
SatI GCNGC 6 cut(s) 100, 147, 150, 188, 254, 737
Sau3AI GATC 4 cut(s) 366, 470, 485, 817
Sau96I GGNCC 4 cut(s) 295, 385, 453, 658
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 7 cut(s) 250, 451, 452, 457, 475, 554, 710
SduI GDGCHC 4 cut(s) 236, 288, 347, 747
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 385
SmaI CCCGGG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 2 cut(s) 857, 876
SspMI CTAG 3 cut(s) 39, 809, 893
SstI GAGCTC 2 cut(s) 288, 747
StyD4I CCNGG 7 cut(s) 248, 449, 450, 455, 473, 552, 708
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 3 cut(s) 57, 132, 641
TaqI TCGA 7 cut(s) 48, 138, 197, 369, 417, 495, 731
TasI AATT 2 cut(s) 857, 876
TauI GCSGC 3 cut(s) 152, 190, 256
TscAI CASTG 4 cut(s) 35, 554, 577, 789
TseI GCWGC 3 cut(s) 99, 146, 736
TspDTI ATGAA 2 cut(s) 101, 856
TspGWI ACGGA 2 cut(s) 183, 540
TspMI CCCGGG 1 cut(s) 450
TspRI CASTG 4 cut(s) 35, 554, 577, 789
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 385
XmaI CCCGGG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 3 cut(s) 39, 809, 893
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.