Lysine-specific histone demethylase 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G62830 |
| fragaria_vesca | FvH4_2g37680 |
| malus_domestica | MD08G1004400.v1.1 MD15G1003800.v1.1 |
| prunus_persica | Prupe.1G356300_v2.0.a1 |
| pyrus_communis | pycom08g00320 pycom15g00270 |
| rosa_chinensis | RchiOBHm_Chr6g0304051 |
| rosa_laevigata | RLG00000011022 |
| rosa_multiflora | Rmu_sc0003805.1_g000012 |
| rosa_roxburghii | Rroxscaffold_7G00164150 |
| rosa_rugosa | Rorug06G0327300 |
| rosa_samantha | Rh6AG441100 Rh6BG461700 Rh6CG453300 Rh6DG440600 |
| rosa_wichuraiana | Rw6G038220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2021 |
| Acc36I | ACCTGC | 1 cut(s) | 2021 |
| AccI | GTMKAC | 1 cut(s) | 2187 |
| AccII | CGCG | 2 cut(s) | 646, 1857 |
| AclI | AACGTT | 1 cut(s) | 400 |
| AclWI | GGATC | 9 cut(s) | 1251, 1340, 1344, 1697, 1886, 1975, 2220, 2308, 2321 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AcsI | RAATTY | 3 cut(s) | 1721, 2248, 2272 |
| AcuI | CTGAAG | 2 cut(s) | 227, 1568 |
| AcyI | GRCGYC | 1 cut(s) | 388 |
| AfaI | GTAC | 3 cut(s) | 75, 1404, 1444 |
| AfeI | AGCGCT | 2 cut(s) | 483, 1206 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 355, 1836, 2209, 2336 |
| AflII | CTTAAG | 1 cut(s) | 2080 |
| AgsI | TTSAA | 6 cut(s) | 194, 539, 884, 1211, 1630, 1901 |
| AjiI | CACGTC | 1 cut(s) | 115 |
| AjnI | CCWGG | 3 cut(s) | 48, 364, 1381 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1869, 1901 |
| Alw26I | GTCTC | 6 cut(s) | 5, 143, 1603, 1782, 1802, 2219 |
| AlwI | GGATC | 9 cut(s) | 1251, 1340, 1344, 1697, 1886, 1975, 2220, 2308, 2321 |
| Aor51HI | AGCGCT | 2 cut(s) | 483, 1206 |
| AoxI | GGCC | 1 cut(s) | 202 |
| ApeKI | GCWGC | 4 cut(s) | 839, 1793, 2099, 2504 |
| ApoI | RAATTY | 3 cut(s) | 1721, 2248, 2272 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 758, 790 |
| AseI | ATTAAT | 1 cut(s) | 987 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 401, 1215, 1422, 1602 |
| AspLEI | GCGC | 3 cut(s) | 484, 658, 1207 |
| AspS9I | GGNCC | 2 cut(s) | 368, 1760 |
| AsuC2I | CCSGG | 2 cut(s) | 78, 900 |
| AvaII | GGWCC | 2 cut(s) | 368, 1760 |
| BamHI | GGATCC | 1 cut(s) | 2313 |
| BbsI | GAAGAC | 3 cut(s) | 51, 204, 2205 |
| BbvCI | CCTCAGC | 1 cut(s) | 1239 |
| BbvI | GCAGC | 4 cut(s) | 826, 1780, 2111, 2491 |
| BccI | CCATC | 6 cut(s) | 776, 932, 1351, 1911, 2006, 2390 |
| BceAI | ACGGC | 2 cut(s) | 217, 375 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 439, 473 |
| BciT130I | CCWGG | 3 cut(s) | 50, 366, 1383 |
| BclI | TGATCA | 1 cut(s) | 1366 |
| BcnI | CCSGG | 2 cut(s) | 78, 900 |
| BcoDI | GTCTC | 6 cut(s) | 5, 143, 1603, 1782, 1802, 2219 |
| BfaI | CTAG | 5 cut(s) | 372, 453, 843, 1092, 2121 |
| BfmI | CTRYAG | 1 cut(s) | 1735 |
| BfoI | RGCGCY | 2 cut(s) | 485, 1208 |
| BfrI | CTTAAG | 1 cut(s) | 2080 |
| BfuAI | ACCTGC | 1 cut(s) | 2021 |
| BglII | AGATCT | 2 cut(s) | 2160, 2523 |
| BisI | GCNGC | 7 cut(s) | 357, 448, 794, 840, 1794, 2100, 2505 |
| BlsI | GCNGC | 7 cut(s) | 358, 449, 795, 841, 1795, 2101, 2506 |
| Bme1390I | CCNGG | 5 cut(s) | 50, 78, 366, 900, 1383 |
| Bme18I | GGWCC | 2 cut(s) | 368, 1760 |
| BmgBI | CACGTC | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 2 cut(s) | 368, 1760 |
| BmiI | GGNNCC | 4 cut(s) | 363, 1533, 2074, 2315 |
| BmrFI | CCNGG | 5 cut(s) | 50, 78, 366, 900, 1383 |
| BmsI | GCATC | 5 cut(s) | 124, 1078, 1124, 1464, 2175 |
| BpiI | GAAGAC | 3 cut(s) | 51, 204, 2205 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2452, 2484 |
| BpmI | CTGGAG | 1 cut(s) | 1806 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 4 cut(s) | 421, 680, 737, 2454 |
| BpuMI | CCSGG | 2 cut(s) | 78, 900 |
| Bsa29I | ATCGAT | 1 cut(s) | 2483 |
| BsaAI | YACGTR | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2165 |
| BsaHI | GRCGYC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 2 cut(s) | 49, 1381 |
| BsaWI | WCCGGW | 5 cut(s) | 508, 748, 980, 1754, 1894 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 355, 1836, 2209, 2336 |
| Bse1I | ACTGG | 1 cut(s) | 272 |
| Bse3DI | GCAATG | 2 cut(s) | 498, 957 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2165 |
| BseBI | CCWGG | 3 cut(s) | 50, 366, 1383 |
| BseCI | ATCGAT | 1 cut(s) | 2483 |
| BseDI | CCNNGG | 2 cut(s) | 49, 1381 |
| BseGI | GGATG | 3 cut(s) | 76, 2284, 2401 |
| BseJI | GATNNNNATC | 1 cut(s) | 2165 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 355, 1836, 2209, 2336 |
| BseMI | GCAATG | 2 cut(s) | 498, 957 |
| BseMII | CTCAG | 4 cut(s) | 303, 402, 1230, 2268 |
| BseNI | ACTGG | 1 cut(s) | 272 |
| BseRI | GAGGAG | 4 cut(s) | 252, 255, 1184, 1731 |
| BseXI | GCAGC | 4 cut(s) | 826, 1780, 2111, 2491 |
| BseYI | CCCAGC | 1 cut(s) | 427 |
| Bsh1236I | CGCG | 2 cut(s) | 646, 1857 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1965 |
| BshFI | GGCC | 1 cut(s) | 204 |
| BshVI | ATCGAT | 1 cut(s) | 2483 |
| BsiEI | CGRYCG | 1 cut(s) | 1965 |
| BsiSI | CCGG | 7 cut(s) | 78, 509, 749, 899, 981, 1755, 1895 |
| BslFI | GGGAC | 1 cut(s) | 1935 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 355, 1836, 2209, 2336 |
| BsmAI | GTCTC | 6 cut(s) | 5, 143, 1603, 1782, 1802, 2219 |
| BsmBI | CGTCTC | 1 cut(s) | 1782 |
| BsmFI | GGGAC | 1 cut(s) | 1935 |
| BsmI | GAATGC | 1 cut(s) | 1263 |
| BsnI | GGCC | 1 cut(s) | 204 |
| Bsp1407I | TGTACA | 1 cut(s) | 1402 |
| BspANI | GGCC | 1 cut(s) | 204 |
| BspCNI | CTCAG | 4 cut(s) | 302, 403, 1231, 2267 |
| BspDI | ATCGAT | 1 cut(s) | 2483 |
| BspFNI | CGCG | 2 cut(s) | 646, 1857 |
| BspLI | GGNNCC | 4 cut(s) | 363, 1533, 2074, 2315 |
| BspMI | ACCTGC | 1 cut(s) | 2021 |
| BspPI | GGATC | 9 cut(s) | 1251, 1340, 1344, 1697, 1886, 1975, 2220, 2308, 2321 |
| BspQI | GCTCTTC | 1 cut(s) | 2122 |
| BspTI | CTTAAG | 1 cut(s) | 2080 |
| BsrDI | GCAATG | 2 cut(s) | 498, 957 |
| BsrGI | TGTACA | 1 cut(s) | 1402 |
| BsrI | ACTGG | 1 cut(s) | 272 |
| BssECI | CCNNGG | 2 cut(s) | 49, 1381 |
| BssNI | GRCGYC | 1 cut(s) | 388 |
| Bst2UI | CCWGG | 3 cut(s) | 50, 366, 1383 |
| Bst4CI | ACNGT | 7 cut(s) | 67, 849, 1158, 1447, 1531, 1943, 2354 |
| BstACI | GRCGYC | 1 cut(s) | 388 |
| BstAFI | CTTAAG | 1 cut(s) | 2080 |
| BstAUI | TGTACA | 1 cut(s) | 1402 |
| BstBAI | YACGTR | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 3 cut(s) | 744, 1083, 2373 |
| BstDEI | CTNAG | 9 cut(s) | 289, 411, 688, 1104, 1151, 1239, 1264, 2111, 2254 |
| BstF5I | GGATG | 3 cut(s) | 76, 2284, 2401 |
| BstFNI | CGCG | 2 cut(s) | 646, 1857 |
| BstH2I | RGCGCY | 2 cut(s) | 485, 1208 |
| BstHHI | GCGC | 3 cut(s) | 484, 658, 1207 |
| BstMAI | GTCTC | 6 cut(s) | 5, 143, 1603, 1782, 1802, 2219 |
| BstMCI | CGRYCG | 1 cut(s) | 1965 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 428, 453, 488, 824, 1781, 1790, 2036 |
| BstNI | CCWGG | 3 cut(s) | 50, 366, 1383 |
| BstNSI | RCATGY | 1 cut(s) | 1409 |
| BstSCI | CCNGG | 5 cut(s) | 48, 76, 364, 898, 1381 |
| BstSFI | CTRYAG | 1 cut(s) | 1735 |
| BstUI | CGCG | 2 cut(s) | 646, 1857 |
| BstV1I | GCAGC | 4 cut(s) | 826, 1780, 2111, 2491 |
| BstV2I | GAAGAC | 3 cut(s) | 51, 204, 2205 |
| BstX2I | RGATCY | 4 cut(s) | 1702, 2160, 2313, 2523 |
| BstYI | RGATCY | 4 cut(s) | 1702, 2160, 2313, 2523 |
| Bsu15I | ATCGAT | 1 cut(s) | 2483 |
| BsuRI | GGCC | 1 cut(s) | 204 |
| BsuTUI | ATCGAT | 1 cut(s) | 2483 |
| BtgZI | GCGATG | 1 cut(s) | 1655 |
| BtrI | CACGTC | 1 cut(s) | 115 |
| BtsCI | GGATG | 3 cut(s) | 76, 2284, 2401 |
| BtsI | GCAGTG | 1 cut(s) | 1507 |
| BtsIMutI | CAGTG | 2 cut(s) | 408, 1507 |
| BveI | ACCTGC | 1 cut(s) | 2021 |
| Cac8I | GCNNGC | 3 cut(s) | 744, 1083, 2373 |
| CfoI | GCGC | 3 cut(s) | 484, 658, 1207 |
| Cfr13I | GGNCC | 2 cut(s) | 368, 1760 |
| ClaI | ATCGAT | 1 cut(s) | 2483 |
| CseI | GACGC | 5 cut(s) | 126, 396, 445, 1799, 2121 |
| Csp6I | GTAC | 3 cut(s) | 74, 1403, 1443 |
| CviAII | CATG | 4 cut(s) | 653, 722, 1406, 2293 |
| CviQI | GTAC | 3 cut(s) | 74, 1403, 1443 |
| DdeI | CTNAG | 9 cut(s) | 289, 411, 688, 1104, 1151, 1239, 1264, 2111, 2254 |
| DraI | TTTAAA | 1 cut(s) | 2148 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| EciI | GGCGGA | 1 cut(s) | 374 |
| Eco47I | GGWCC | 2 cut(s) | 368, 1760 |
| Eco47III | AGCGCT | 2 cut(s) | 483, 1206 |
| Eco57I | CTGAAG | 2 cut(s) | 227, 1568 |
| EcoRI | GAATTC | 1 cut(s) | 1721 |
| EcoRII | CCWGG | 3 cut(s) | 48, 364, 1381 |
| Esp3I | CGTCTC | 1 cut(s) | 1782 |
| FaeI | CATG | 4 cut(s) | 656, 725, 1409, 2296 |
| FaqI | GGGAC | 1 cut(s) | 1935 |
| FatI | CATG | 4 cut(s) | 652, 721, 1405, 2292 |
| FauI | CCCGC | 2 cut(s) | 811, 900 |
| FauNDI | CATATG | 1 cut(s) | 1954 |
| FbaI | TGATCA | 1 cut(s) | 1366 |
| FblI | GTMKAC | 1 cut(s) | 2187 |
| Fnu4HI | GCNGC | 7 cut(s) | 357, 448, 794, 840, 1794, 2100, 2505 |
| FokI | GGATG | 3 cut(s) | 83, 2291, 2408 |
| Fsp4HI | GCNGC | 7 cut(s) | 357, 448, 794, 840, 1794, 2100, 2505 |
| FspBI | CTAG | 5 cut(s) | 372, 453, 843, 1092, 2121 |
| GlaI | GCGC | 3 cut(s) | 483, 657, 1206 |
| GluI | GCNGC | 7 cut(s) | 357, 448, 794, 840, 1794, 2100, 2505 |
| GsaI | CCCAGC | 1 cut(s) | 431 |
| GsuI | CTGGAG | 1 cut(s) | 1806 |
| HaeII | RGCGCY | 2 cut(s) | 485, 1208 |
| HaeIII | GGCC | 1 cut(s) | 204 |
| HapII | CCGG | 7 cut(s) | 78, 509, 749, 899, 981, 1755, 1895 |
| HgaI | GACGC | 5 cut(s) | 126, 396, 445, 1799, 2121 |
| HhaI | GCGC | 3 cut(s) | 484, 658, 1207 |
| Hin1I | GRCGYC | 1 cut(s) | 388 |
| Hin1II | CATG | 4 cut(s) | 656, 725, 1409, 2296 |
| Hin6I | GCGC | 3 cut(s) | 482, 656, 1205 |
| HinP1I | GCGC | 3 cut(s) | 482, 656, 1205 |
| HincII | GTYRAC | 2 cut(s) | 6, 642 |
| HindII | GTYRAC | 2 cut(s) | 6, 642 |
| HindIII | AAGCTT | 1 cut(s) | 1148 |
| HpaI | GTTAAC | 1 cut(s) | 642 |
| HpaII | CCGG | 7 cut(s) | 78, 509, 749, 899, 981, 1755, 1895 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 118, 642, 1486, 1710, 2188, 2265 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 118, 642, 1486, 1710, 2188, 2265 |
| Hpy99I | CGWCG | 5 cut(s) | 113, 116, 142, 148, 461 |
| HpyAV | CCTTC | 4 cut(s) | 722, 878, 2086, 2468 |
| HpyCH4III | ACNGT | 7 cut(s) | 67, 849, 1158, 1447, 1531, 1943, 2354 |
| HpyCH4IV | ACGT | 3 cut(s) | 114, 400, 670 |
| HpyCH4V | TGCA | 7 cut(s) | 1295, 1527, 1846, 2030, 2068, 2166, 2507 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 428, 453, 488, 824, 1781, 1790, 2036 |
| HpyF3I | CTNAG | 9 cut(s) | 289, 411, 688, 1104, 1151, 1239, 1264, 2111, 2254 |
| HpySE526I | ACGT | 3 cut(s) | 114, 400, 670 |
| Hsp92I | GRCGYC | 1 cut(s) | 388 |
| Hsp92II | CATG | 4 cut(s) | 656, 725, 1409, 2296 |
| HspAI | GCGC | 3 cut(s) | 482, 656, 1205 |
| Ksp22I | TGATCA | 1 cut(s) | 1366 |
| KspAI | GTTAAC | 1 cut(s) | 642 |
| LguI | GCTCTTC | 1 cut(s) | 2122 |
| LmnI | GCTCC | 6 cut(s) | 181, 238, 331, 361, 751, 2072 |
| Lsp1109I | GCAGC | 4 cut(s) | 826, 1780, 2111, 2491 |
| LweI | GCATC | 5 cut(s) | 124, 1078, 1124, 1464, 2175 |
| MaeI | CTAG | 5 cut(s) | 372, 453, 843, 1092, 2121 |
| MaeII | ACGT | 3 cut(s) | 114, 400, 670 |
| MaeIII | GTNAC | 4 cut(s) | 325, 1493, 1655, 2359 |
| MflI | RGATCY | 4 cut(s) | 1702, 2160, 2313, 2523 |
| MlyI | GAGTC | 2 cut(s) | 671, 2470 |
| MmeI | TCCRAC | 2 cut(s) | 1113, 1945 |
| MroXI | GAANNNNTTC | 4 cut(s) | 401, 1215, 1422, 1602 |
| MspA1I | CMGCKG | 1 cut(s) | 2205 |
| MspCI | CTTAAG | 1 cut(s) | 2080 |
| MspI | CCGG | 7 cut(s) | 78, 509, 749, 899, 981, 1755, 1895 |
| MspR9I | CCNGG | 5 cut(s) | 50, 78, 366, 900, 1383 |
| Mva1269I | GAATGC | 1 cut(s) | 1263 |
| MvaI | CCWGG | 3 cut(s) | 50, 366, 1383 |
| MvnI | CGCG | 2 cut(s) | 646, 1857 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 428, 453, 488, 824, 1781, 1790, 2036 |
| NciI | CCSGG | 2 cut(s) | 78, 900 |
| NdeI | CATATG | 1 cut(s) | 1954 |
| NlaIII | CATG | 4 cut(s) | 656, 725, 1409, 2296 |
| NlaIV | GGNNCC | 4 cut(s) | 363, 1533, 2074, 2315 |
| NmeAIII | GCCGAG | 1 cut(s) | 2023 |
| NmuCI | GTSAC | 1 cut(s) | 2359 |
| NspI | RCATGY | 1 cut(s) | 1409 |
| PaqCI | CACCTGC | 1 cut(s) | 2021 |
| PciSI | GCTCTTC | 1 cut(s) | 2122 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 111, 117, 2229 |
| PctI | GAATGC | 1 cut(s) | 1263 |
| PdmI | GAANNNNTTC | 4 cut(s) | 401, 1215, 1422, 1602 |
| PflFI | GACNNNGTC | 1 cut(s) | 1813 |
| PkrI | GCNGC | 7 cut(s) | 358, 449, 795, 841, 1795, 2101, 2506 |
| PleI | GAGTC | 2 cut(s) | 670, 2469 |
| PpsI | GAGTC | 2 cut(s) | 670, 2469 |
| Ppu21I | YACGTR | 1 cut(s) | 671 |
| PshBI | ATTAAT | 1 cut(s) | 987 |
| Psp1406I | AACGTT | 1 cut(s) | 400 |
| Psp6I | CCWGG | 3 cut(s) | 48, 364, 1381 |
| PspFI | CCCAGC | 1 cut(s) | 427 |
| PspGI | CCWGG | 3 cut(s) | 48, 364, 1381 |
| PspN4I | GGNNCC | 4 cut(s) | 363, 1533, 2074, 2315 |
| PspPI | GGNCC | 2 cut(s) | 368, 1760 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 46, 78 |
| PsuI | RGATCY | 4 cut(s) | 1702, 2160, 2313, 2523 |
| PsyI | GACNNNGTC | 1 cut(s) | 1813 |
| RsaI | GTAC | 3 cut(s) | 75, 1404, 1444 |
| RsaNI | GTAC | 3 cut(s) | 74, 1403, 1443 |
| SapI | GCTCTTC | 1 cut(s) | 2122 |
| SatI | GCNGC | 7 cut(s) | 357, 448, 794, 840, 1794, 2100, 2505 |
| Sau96I | GGNCC | 2 cut(s) | 368, 1760 |
| SchI | GAGTC | 2 cut(s) | 671, 2470 |
| ScrFI | CCNGG | 5 cut(s) | 50, 78, 366, 900, 1383 |
| SfaNI | GCATC | 5 cut(s) | 124, 1078, 1124, 1464, 2175 |
| SfcI | CTRYAG | 1 cut(s) | 1735 |
| SinI | GGWCC | 2 cut(s) | 368, 1760 |
| SmlI | CTYRAG | 5 cut(s) | 436, 659, 716, 2080, 2469 |
| SmoI | CTYRAG | 5 cut(s) | 436, 659, 716, 2080, 2469 |
| SspI | AATATT | 2 cut(s) | 190, 1398 |
| SspMI | CTAG | 5 cut(s) | 372, 453, 843, 1092, 2121 |
| StyD4I | CCNGG | 5 cut(s) | 48, 76, 364, 898, 1381 |
| TaaI | ACNGT | 7 cut(s) | 67, 849, 1158, 1447, 1531, 1943, 2354 |
| TaiI | ACGT | 3 cut(s) | 117, 403, 673 |
| TatI | WGTACW | 2 cut(s) | 1402, 1442 |
| TauI | GCSGC | 3 cut(s) | 359, 450, 796 |
| TscAI | CASTG | 2 cut(s) | 415, 1514 |
| TseFI | GTSAC | 1 cut(s) | 2359 |
| TseI | GCWGC | 4 cut(s) | 839, 1793, 2099, 2504 |
| Tsp45I | GTSAC | 1 cut(s) | 2359 |
| TspDTI | ATGAA | 5 cut(s) | 941, 1025, 1926, 2295, 2430 |
| TspRI | CASTG | 2 cut(s) | 415, 1514 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1813 |
| Vha464I | CTTAAG | 1 cut(s) | 2080 |
| VpaK11BI | GGWCC | 2 cut(s) | 368, 1760 |
| VspI | ATTAAT | 1 cut(s) | 987 |
| XapI | RAATTY | 3 cut(s) | 1721, 2248, 2272 |
| XceI | RCATGY | 1 cut(s) | 1409 |
| XmiI | GTMKAC | 1 cut(s) | 2187 |
| XmnI | GAANNNNTTC | 4 cut(s) | 401, 1215, 1422, 1602 |
| XspI | CTAG | 5 cut(s) | 372, 453, 843, 1092, 2121 |