Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003805.1

Orthogroup ID

OG0014492

Physical Location & Seq

Genomic Coordinates Forward (+)

56023 .. 57012

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003805.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggttctttgcactgtgccattaggtgtgcttaagaaggggtcaattgaatttgtcccagagcttccacaaaggaagagagatgcaattcagagtttgggatttggattgttgaataaggttgccatattgtttccttataacttttggggtggagacattgatacttttgggcatttgactgaggatccgtgtatgagaggagagttctttctgttttatagctattcttctgtgtcaggaggccctcttctagttgcgcttgttgcaggagatgctgccattaagtttgagctgatgtctcccgtcgaatctgtgaatagggtgttggagatactgaggggcattttccacccaaaaggtattgctgttccggaacctattcaggcagtgtgcactcggtgggggaaggatgactttgcatacgggtcatattcatatgttgcagtaggttcttcaggagatgattacgatattcttgcagagagcattggggatgggagagtattctttgctggagaggccactaacaagcagtatccggcaacaatgcatggagctttgctcagtgggatgagagaggctgctaacatgttgagagtagctaaaaggaggtcaataatcccctcacagaaatttaataatgcttccgaggacaatgaggatttggataaattatttgacacccctgacttgacatttgggagcttctccgttttgttcgatcccaggtcatcggatcctgattctacatccctgtttagggttaaactcggaggggaaaagttggacatgggatgtttcagtttgtatggcttagtattaaagaagcatgccttcaagctgagagatgtagaaggtgacgggaacaggatgacaatgttgaattttgaatttggagtgaggctggttgggagaaaaggtctgagtggtgttgcggaatctctgatcacctgcattagattagcaaaatcaggtatgaaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

329

Amino Acids

36.08

Weight (kDa)

6.15

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62830
fragaria_vesca	FvH4_2g37680
malus_domestica	MD08G1004400.v1.1 MD15G1003800.v1.1
prunus_persica	Prupe.1G356300_v2.0.a1
pyrus_communis	pycom08g00320 pycom15g00270
rosa_chinensis	RchiOBHm_Chr6g0304051
rosa_laevigata	RLG00000011022
rosa_multiflora	Rmu_sc0003805.1_g000012
rosa_roxburghii	Rroxscaffold_7G00164150
rosa_rugosa	Rorug06G0327300
rosa_samantha	Rh6AG441100 Rh6BG461700 Rh6CG453300 Rh6DG440600
rosa_wichuraiana	Rw6G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AarI	CACCTGC	1 cut(s)	962
Acc36I	ACCTGC	1 cut(s)	962
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	1 cut(s)	938
AclWI	GGATC	5 cut(s)	182, 195, 719, 734, 747
AcsI	RAATTY	4 cut(s)	50, 635, 886, 893
AcuI	CTGAAG	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	762, 763
AflII	CTTAAG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	5 cut(s)	50, 115, 841, 886, 893
AjnI	CCWGG	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	7 cut(s)	64, 225, 295, 560, 605, 708, 844
AluI	AGCT	7 cut(s)	64, 225, 295, 560, 605, 708, 844
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	150, 306
Alw44I	GTGCAC	1 cut(s)	394
AlwI	GGATC	5 cut(s)	182, 195, 719, 734, 747
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	2 cut(s)	244, 522
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	278, 584
ApoI	RAATTY	4 cut(s)	50, 635, 886, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	872, 943
BaeGI	GKGCMC	1 cut(s)	398
BamHI	GGATCC	2 cut(s)	187, 739
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	265, 571
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	1 cut(s)	730
BciVI	GTATCC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	948
BcoDI	GTCTC	2 cut(s)	150, 306
BfaI	CTAG	1 cut(s)	254
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	962
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	2 cut(s)	279, 585
BlsI	GCNGC	2 cut(s)	280, 586
Bme1390I	CCNGG	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	189, 378, 741
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	73, 265
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
BpmI	CTGGAG	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	651, 728
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	762, 763
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	2 cut(s)	651, 728
BseGI	GGATG	6 cut(s)	418, 502, 579, 752, 803, 879
BseLI	CCNNNNNNNGG	2 cut(s)	762, 763
BseMII	CTCAG	5 cut(s)	174, 329, 580, 836, 917
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	265, 571
BshFI	GGCC	2 cut(s)	246, 524
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	374, 542
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	762, 763
BsmAI	GTCTC	2 cut(s)	150, 306
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	246, 524
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	187, 724, 739, 948
BspACI	CCGC	1 cut(s)	938
BspANI	GGCC	2 cut(s)	246, 524
BspCNI	CTCAG	5 cut(s)	175, 330, 579, 837, 918
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	189, 378, 741
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	5 cut(s)	182, 195, 719, 734, 747
BspTI	CTTAAG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	651, 728
BssMI	GATC	4 cut(s)	187, 724, 739, 948
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	2 cut(s)	16, 987
Bst6I	CTCTTC	2 cut(s)	71, 255
BstAFI	CTTAAG	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	6 cut(s)	183, 338, 566, 817, 845, 926
BstF5I	GGATG	6 cut(s)	418, 502, 579, 752, 803, 879
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	190, 727, 742, 951
BstMAI	GTCTC	2 cut(s)	150, 306
BstMBI	GATC	4 cut(s)	187, 724, 739, 948
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 521
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	2 cut(s)	595, 836
BstSCI	CCNGG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	265, 571
BstX2I	RGATCY	2 cut(s)	187, 739
BstYI	RGATCY	2 cut(s)	187, 739
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	246, 524
BtsCI	GGATG	6 cut(s)	418, 502, 579, 752, 803, 879
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	12, 396, 574
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	1 cut(s)	834
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	4 cut(s)	554, 592, 793, 833
DdeI	CTNAG	6 cut(s)	183, 338, 566, 817, 845, 926
DpnI	GATC	4 cut(s)	189, 726, 741, 950
DpnII	GATC	4 cut(s)	187, 724, 739, 948
DraIII	CACNNNGTG	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	71, 255
EarI	CTCTTC	2 cut(s)	71, 255
Eco57I	CTGAAG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	728
EcoT22I	ATGCAT	1 cut(s)	555
FaeI	CATG	4 cut(s)	557, 595, 796, 836
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 821, 853
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	4 cut(s)	553, 591, 792, 832
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	2 cut(s)	279, 585
FokI	GGATG	6 cut(s)	425, 509, 586, 739, 810, 886
Fsp4HI	GCNGC	2 cut(s)	279, 585
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	279, 585
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	246, 524
HapII	CCGG	2 cut(s)	374, 542
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	557, 595, 796, 836
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	311, 746, 941
HpaII	CCGG	2 cut(s)	374, 542
HphI	GGTGA	2 cut(s)	872, 943
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	6 cut(s)	93, 652, 739, 776, 927, 948
Hpy188III	TCNNGA	4 cut(s)	240, 374, 459, 743
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	4 cut(s)	31, 403, 847, 851
HpyCH4III	ACNGT	2 cut(s)	16, 987
HpyCH4V	TGCA	9 cut(s)	12, 86, 269, 396, 422, 446, 482, 553, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 521
HpyF3I	CTNAG	6 cut(s)	183, 338, 566, 817, 845, 926
Hsp92II	CATG	4 cut(s)	557, 595, 796, 836
HspAI	GCGC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	948
Kzo9I	GATC	4 cut(s)	187, 724, 739, 948
LmnI	GCTCC	2 cut(s)	557, 705
Lsp1109I	GCAGC	2 cut(s)	265, 571
LweI	GCATC	2 cut(s)	73, 265
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	860
MalI	GATC	4 cut(s)	189, 726, 741, 950
MboI	GATC	4 cut(s)	187, 724, 739, 948
MboII	GAAGA	4 cut(s)	88, 222, 242, 447
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	2 cut(s)	187, 739
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	7 cut(s)	45, 50, 87, 635, 674, 886, 893
MmeI	TCCRAC	2 cut(s)	309, 768
Mph1103I	ATGCAT	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	5 cut(s)	33, 285, 639, 768, 824
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	2 cut(s)	374, 542
MspR9I	CCNGG	1 cut(s)	730
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 521
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	4 cut(s)	187, 724, 739, 948
NlaIII	CATG	4 cut(s)	557, 595, 796, 836
NlaIV	GGNNCC	3 cut(s)	189, 378, 741
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	2 cut(s)	595, 836
PaeI	GCATGC	1 cut(s)	836
PaqCI	CACCTGC	1 cut(s)	962
PciI	ACATGT	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	311, 746, 941
PkrI	GCNGC	2 cut(s)	280, 586
PscI	ACATGT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	189, 378, 741
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	187, 739
SaqAI	TTAA	5 cut(s)	33, 285, 639, 768, 824
SatI	GCNGC	2 cut(s)	279, 585
Sau3AI	GATC	4 cut(s)	187, 724, 739, 948
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	2 cut(s)	73, 265
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	836
Sse9I	AATT	7 cut(s)	45, 50, 87, 635, 674, 886, 893
SsiI	CCGC	1 cut(s)	938
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	728
TaaI	ACNGT	2 cut(s)	16, 987
TaqI	TCGA	2 cut(s)	309, 723
TasI	AATT	7 cut(s)	45, 50, 87, 635, 674, 886, 893
TfiI	GAWTC	3 cut(s)	311, 746, 941
Tru1I	TTAA	5 cut(s)	33, 285, 639, 768, 824
Tru9I	TTAA	5 cut(s)	33, 285, 639, 768, 824
TscAI	CASTG	3 cut(s)	19, 396, 574
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	278, 584
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	2 cut(s)	180, 703
TspRI	CASTG	3 cut(s)	19, 396, 574
Vha464I	CTTAAG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	50, 635, 886, 893
XceI	RCATGY	2 cut(s)	595, 836
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.