Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014492

Physical Location & Seq

Genomic Coordinates Reverse (-)

61674636 .. 61677023

Gene Structure 2388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGGAAGCAGCGGACCAACCCCAAAACGACGTCGTCTCCGGCGATTCCTCGCCGGAAACTGACCTCACCCGCTCATCGAGCCCTCAGGAAAACAACCAAAACGATTCACAGAACCAGTCCTCGGAAAACCCGTCGGCACCACCGCAAGCGCCCATTTCGGACTCTCAAGATGACTCCTCCGAACCCATCCCTGAAGACACCCCTAATGAACCGCCTCAAAACCCCGGCGGACCGGGTCCAGCAGAGACCACCAGCCTTCCGGCGAAACGACGCCGTCGCAGGAAGAAGTTTTTCACGGAGCTGATCGGCACTCCGTCGATGGCCAAGAGCCGCCGGACCGACCTCAACAAAGAGGTCGACACCGAAGCCCTGATCGCACTCTCGGTGGGGTTTCCGGTAGACTCGCTCACAGAGGAGGAGATCGAGGCCAACGTGGTCCCCACCATCGGCGGAGTTGAGCAGGCCAACTATATCGTCGTCCGGAACCACATTCTGTCCAGGTGGCGGTCCAATGTTTCGTTCTGGTTGACCAGGGAGCTGGCTCTGGAGTCGATTCGGCTGGAGCATAAAGGATTGGTCGACAAAGCTTACAATTTTCTGGTGGAGCACGGCTACATCAACTTCGGGCTAGCTCCGGCGATTAAAGAAGTGAAATTGAGGTCGTTTGATGGGTCTGAGAGGGGCAATGTGGTAATTGTGGGAGCTGGTTTGGCCGGTTTGGTGGCGGCCAGGCAGTTGGTGTTTTTGGGGTTCAAAGTTGTGGTATTGGAAGGCAGGAGTAGGCCTGGAGGGAGAGTGAAGACGAAGAAAATGAAAGGGGAGGGATTGGAGGCTGCAGCTGATCTCGGTGGGAGTGTCCTCACCGGAATAAATGGGAACCCACTAGGGGTTTTGGCTCGGCAATTGGAGCTGCCTCTTCATAAGGTGAGGGATCTTTGCCCTCTTTATTTACCAGATGGAAAATCTGTGAATTCTGAAATTGATGATAGAATAGAGGCTTCTTTTAATAAGTTGTTAGATAGAGTTTGTAAGCTTAGACATGCAATGATTGAGGAAGTTAAGTCTGTAGATGTTCCGTTAGGGACTGCACTGGAAGCTTTTCGAAGAGTGTGTAATGTGGCTCAGGATCCGCAGGAGAGAATGCTCTTGGATTGGCATCTTGCTAATTTGGAATATGCAAATGCCACCTTGATGTCTAATTTGTCAATGGCGTATTGGGATCAGGATGATCCCTATGAGATGGGTGGTGACCATTGTTTTATTCCCGGAGGCAATGAGACCTTTGTGCGAGCCCTTGCAGAGGGCCTTCCAATTTTCTATGACAGGACTGTGGAAAGTATTAGGTATGGAACTGATGGGGTTTTGGTTTACGCAAATGGCCAGGAGTTTCGAGGGGACATGGTTCTTTGCACTGTGCCATTAGGTGTGCTTAAGAAGGGGTCAATTGAATTTGTCCCAGAGCTTCCACAAAGGAAGAGAGATGCAATTCAGAGTTTGGGATTTGGATTGTTGAATAAGGTTGCCATATTGTTTCCTTATAACTTTTGGGGTGGAGACATTGATACTTTTGGGCATTTGACTGAGGATCCGTGTATGAGAGGAGAGTTCTTTCTGTTTTATAGCTATTCTTCTGTGTCAGGAGGCCCTCTTCTAGTTGCGCTTGTTGCAGGAGATGCTGCCATTAAGTTTGAGCTGATGTCTCCCGTGGAATCTGTGAATAGGGTGTTGGAGATACTGAGGGGCATTTTCCACCCGAAAGGTATTGCTGTTCCGGAACCTATTCAGGCAGTGTGCACTCGGTGGGGGAAGGATGACTTTGCATACGGGTCATATTCATATGTTGCAGTAGGTTCTTCAGGAGATGATTACGATATTCTTGCAGAGAGCATTGGGGATGGGAGAGTATTCTTTGCTGGAGAGGCCACTAACAAGCAGTATCCGGCAACAATGCATGGAGCTTTGCTCAGTGGGATGAGAGAGGCTGCTAACATGTTGAGAGTAGCTAAAAGAAGGTCAATAATCCCCTCACAGAAATTTAATAATGCTTCCGAGGACAATGAGGATTTGGATAAATTATTTGATACCCCTGACTTAACATTTGGGAGCTTCTCTGTTTTGTTCGATCCCAGGTCATCGGATCCTGATTCTTCATCCCTGTTTAGGGTTAAACTCGGAGGGGAAAAGTTGGACATGGGATGTTTCAGTTTGTATGGCTTAATATCAAAGAAGCATGCCTTCAAGCTGAGAGATGTAGAAGGTGATGGGAACAGGATGACAATGTTGAATTTTGAATTCGGAGTGAGGCTGGTTGGGAGAAAAGGTCTGAGTGGTGTTGCGGAATCTCTGATCACCTGCATTAGATTAGCAAAATCAGGTATGAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

795

Amino Acids

87.18

Weight (kDa)

5.25

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	135 - 208	2.1e-14	SWIRM domain
NAD_binding_8	PF13450	232 - 291	1.4e-11	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	237 - 665	2.1e-87	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62830
fragaria_vesca	FvH4_2g37680
malus_domestica	MD08G1004400.v1.1 MD15G1003800.v1.1
prunus_persica	Prupe.1G356300_v2.0.a1
pyrus_communis	pycom08g00320 pycom15g00270
rosa_chinensis	RchiOBHm_Chr6g0304051
rosa_laevigata	RLG00000011022
rosa_multiflora	Rmu_sc0003805.1_g000012
rosa_roxburghii	Rroxscaffold_7G00164150
rosa_rugosa	Rorug06G0327300
rosa_samantha	Rh6AG441100 Rh6BG461700 Rh6CG453300 Rh6DG440600
rosa_wichuraiana	Rw6G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1539
AarI	CACCTGC	1 cut(s)	2360
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	2360
AccB1I	GGYRCC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	3 cut(s)	357, 399, 579
AccIII	TCCGGA	2 cut(s)	480, 1771
AcoI	YGGCCR	4 cut(s)	321, 711, 726, 1378
AcsI	RAATTY	5 cut(s)	970, 1448, 2033, 2284, 2291
AcuI	CTGAAG	2 cut(s)	213, 1839
AcyI	GRCGYC	2 cut(s)	30, 271
AdeI	CACNNNGTG	1 cut(s)	1800
AfiI	CCNNNNNNNGG	7 cut(s)	121, 446, 504, 886, 1300, 2160, 2161
AflII	CTTAAG	1 cut(s)	1430
AflIII	ACRYGT	1 cut(s)	1989
AgsI	TTSAA	6 cut(s)	754, 1448, 1513, 2239, 2284, 2291
AjnI	CCWGG	6 cut(s)	497, 530, 728, 784, 1380, 2126
AjuI	GAANNNNNNNTTGG	4 cut(s)	503, 535, 1709, 1741
Alw21I	GWGCWC	2 cut(s)	609, 1796
Alw26I	GTCTC	5 cut(s)	40, 239, 1271, 1548, 1704
Alw44I	GTGCAC	1 cut(s)	1792
Aor13HI	TCCGGA	2 cut(s)	480, 1771
ApaLI	GTGCAC	1 cut(s)	1792
ApeKI	GCWGC	6 cut(s)	8, 833, 836, 910, 1676, 1982
ApoI	RAATTY	5 cut(s)	970, 1448, 2033, 2284, 2291
ArsI	GACNNNNNNTTYG	2 cut(s)	2081, 2113
Asp700I	GAANNNNTTC	3 cut(s)	290, 1098, 1779
AspLEI	GCGC	2 cut(s)	151, 1660
AspS9I	GGNCC	8 cut(s)	13, 230, 236, 336, 436, 507, 1303, 1643
AsuC2I	CCSGG	3 cut(s)	225, 234, 1266
AsuHPI	GGTGA	6 cut(s)	58, 853, 937, 1259, 2270, 2341
AsuII	TTCGAA	1 cut(s)	1102
AsuNHI	GCTAGC	1 cut(s)	628
AvaII	GGWCC	6 cut(s)	13, 230, 236, 336, 436, 507
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	1796
BalI	TGGCCA	2 cut(s)	323, 1380
BamHI	GGATCC	3 cut(s)	1126, 1585, 2137
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	83, 1294
BbsI	GAAGAC	2 cut(s)	201, 806
Bbv12I	GWGCWC	2 cut(s)	609, 1796
BbvI	GCAGC	6 cut(s)	20, 820, 848, 897, 1663, 1969
BccI	CCATC	9 cut(s)	194, 313, 452, 662, 950, 1234, 1349, 1889, 2255
BceAI	ACGGC	2 cut(s)	258, 625
BcgI	CGANNNNNNTGC	2 cut(s)	1859, 1893
BciT130I	CCWGG	6 cut(s)	499, 532, 730, 786, 1382, 2128
BciVI	GTATCC	1 cut(s)	1947
BclI	TGATCA	1 cut(s)	2346
BcnI	CCSGG	3 cut(s)	225, 234, 1266
BcoDI	GTCTC	5 cut(s)	40, 239, 1271, 1548, 1704
BfaI	CTAG	3 cut(s)	629, 884, 1652
BfmI	CTRYAG	2 cut(s)	834, 1065
BfoI	RGCGCY	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	1430
BfuAI	ACCTGC	1 cut(s)	2360
BfuI	GTATCC	1 cut(s)	1947
BisI	GCNGC	8 cut(s)	9, 331, 726, 834, 837, 911, 1677, 1983
BlsI	GCNGC	8 cut(s)	10, 332, 727, 835, 838, 912, 1678, 1984
Bme1390I	CCNGG	9 cut(s)	225, 234, 499, 532, 730, 786, 1266, 1382, 2128
Bme18I	GGWCC	6 cut(s)	13, 230, 236, 336, 436, 507
BmgT120I	GGNCC	8 cut(s)	13, 230, 236, 336, 436, 507, 1303, 1643
BmiI	GGNNCC	9 cut(s)	138, 237, 438, 485, 878, 1128, 1587, 1776, 2139
BmrFI	CCNGG	9 cut(s)	225, 234, 499, 532, 730, 786, 1266, 1382, 2128
BmsI	GCATC	3 cut(s)	1165, 1471, 1663
BmtI	GCTAGC	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	201, 806
BplI	GAGNNNNNCTC	2 cut(s)	1947, 1979
BpmI	CTGGAG	4 cut(s)	566, 581, 807, 1935
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu14I	TTCGAA	1 cut(s)	1102
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	3 cut(s)	225, 234, 1266
BsaBI	GATNNNNATC	1 cut(s)	1155
BsaHI	GRCGYC	2 cut(s)	30, 271
BsaI	GGTCTC	2 cut(s)	239, 1271
BsaJI	CCNNGG	6 cut(s)	120, 223, 531, 1704, 2049, 2126
BsaWI	WCCGGW	4 cut(s)	394, 480, 863, 1771
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 780, 810, 2305, 2335
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 446, 504, 886, 1300, 2160, 2161
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	115, 1095
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	691, 1050, 1279
Bse8I	GATNNNNATC	1 cut(s)	1155
BseAI	TCCGGA	2 cut(s)	480, 1771
BseBI	CCWGG	6 cut(s)	499, 532, 730, 786, 1382, 2128
BseDI	CCNNGG	6 cut(s)	120, 223, 531, 1704, 2049, 2126
BseGI	GGATG	8 cut(s)	186, 1231, 1816, 1900, 1977, 2150, 2201, 2277
BseJI	GATNNNNATC	1 cut(s)	1155
BseLI	CCNNNNNNNGG	7 cut(s)	121, 446, 504, 886, 1300, 2160, 2161
BseMI	GCAATG	3 cut(s)	691, 1050, 1279
BseMII	CTCAG	8 cut(s)	98, 666, 1136, 1572, 1727, 1978, 2234, 2315
BseNI	ACTGG	2 cut(s)	115, 1095
BseRI	GAGGAG	4 cut(s)	166, 428, 431, 1614
BseSI	GKGCMC	1 cut(s)	1796
BseXI	GCAGC	6 cut(s)	20, 820, 848, 897, 1663, 1969
BsgI	GTGCAG	1 cut(s)	1071
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	609, 1796
BslFI	GGGAC	4 cut(s)	422, 1096, 1409, 1439
BslI	CCNNNNNNNGG	7 cut(s)	121, 446, 504, 886, 1300, 2160, 2161
BsmAI	GTCTC	5 cut(s)	40, 239, 1271, 1548, 1704
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	4 cut(s)	422, 1096, 1409, 1439
BsmI	GAATGC	1 cut(s)	1146
Bso31I	GGTCTC	2 cut(s)	239, 1271
Bsp119I	TTCGAA	1 cut(s)	1102
Bsp1286I	GDGCHC	4 cut(s)	83, 609, 1294, 1796
Bsp13I	TCCGGA	2 cut(s)	480, 1771
BspCNI	CTCAG	8 cut(s)	97, 667, 1135, 1573, 1728, 1977, 2235, 2316
BspEI	TCCGGA	2 cut(s)	480, 1771
BspLI	GGNNCC	9 cut(s)	138, 237, 438, 485, 878, 1128, 1587, 1776, 2139
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	2360
BspOI	GCTAGC	1 cut(s)	632
BspT104I	TTCGAA	1 cut(s)	1102
BspT107I	GGYRCC	1 cut(s)	136
BspTI	CTTAAG	1 cut(s)	1430
BspTNI	GGTCTC	2 cut(s)	239, 1271
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	3 cut(s)	691, 1050, 1279
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	115, 1095
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	6 cut(s)	120, 223, 531, 1704, 2049, 2126
BssNI	GRCGYC	2 cut(s)	30, 271
Bst2UI	CCWGG	6 cut(s)	499, 532, 730, 786, 1382, 2128
Bst4CI	ACNGT	3 cut(s)	1330, 1414, 2385
Bst6I	CTCTTC	4 cut(s)	921, 1099, 1469, 1653
BstACI	GRCGYC	2 cut(s)	30, 271
BstAFI	CTTAAG	1 cut(s)	1430
BstAPI	GCANNNNNTGC	1 cut(s)	1673
BstBI	TTCGAA	1 cut(s)	1102
BstC8I	GCNNGC	6 cut(s)	147, 462, 540, 630, 1290, 2232
BstDEI	CTNAG	9 cut(s)	84, 675, 1034, 1122, 1581, 1736, 1964, 2243, 2324
BstDSI	CCRYGG	1 cut(s)	1704
BstEII	GGTNACC	1 cut(s)	1247
BstENI	CCTNNNNNAGG	1 cut(s)	1298
BstF5I	GGATG	8 cut(s)	186, 1231, 1816, 1900, 1977, 2150, 2201, 2277
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 1660
BstMAI	GTCTC	5 cut(s)	40, 239, 1271, 1548, 1704
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 374, 710, 907, 1094, 1664, 1673, 1919
BstNI	CCWGG	6 cut(s)	499, 532, 730, 786, 1382, 2128
BstNSI	RCATGY	3 cut(s)	1043, 1993, 2234
BstPI	GGTNACC	1 cut(s)	1247
BstSCI	CCNGG	9 cut(s)	223, 232, 497, 530, 728, 784, 1264, 1380, 2126
BstSFI	CTRYAG	2 cut(s)	834, 1065
BstSLI	GKGCMC	1 cut(s)	1796
BstV1I	GCAGC	6 cut(s)	20, 820, 848, 897, 1663, 1969
BstV2I	GAAGAC	2 cut(s)	201, 806
BstX2I	RGATCY	4 cut(s)	931, 1126, 1585, 2137
BstXI	CCANNNNNNTGG	2 cut(s)	538, 736
BstYI	RGATCY	4 cut(s)	931, 1126, 1585, 2137
Bsu36I	CCTNAGG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	1947
BtgI	CCRYGG	1 cut(s)	1704
BtsCI	GGATG	8 cut(s)	186, 1231, 1816, 1900, 1977, 2150, 2201, 2277
BtsI	GCAGTG	1 cut(s)	1794
BtsIMutI	CAGTG	4 cut(s)	1088, 1410, 1794, 1972
BveI	ACCTGC	1 cut(s)	2360
Cac8I	GCNNGC	6 cut(s)	147, 462, 540, 630, 1290, 2232
CfoI	GCGC	2 cut(s)	151, 1660
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	8 cut(s)	13, 230, 236, 336, 436, 507, 1303, 1643
CpoI	CGGWCCG	2 cut(s)	230, 336
CseI	GACGC	1 cut(s)	279
CspI	CGGWCCG	2 cut(s)	230, 336
CviAII	CATG	6 cut(s)	1040, 1399, 1952, 1990, 2191, 2231
DdeI	CTNAG	9 cut(s)	84, 675, 1034, 1122, 1581, 1736, 1964, 2243, 2324
DraIII	CACNNNGTG	1 cut(s)	1800
EaeI	YGGCCR	4 cut(s)	321, 711, 726, 1378
Eam1104I	CTCTTC	4 cut(s)	921, 1099, 1469, 1653
EarI	CTCTTC	4 cut(s)	921, 1099, 1469, 1653
EciI	GGCGGA	2 cut(s)	243, 465
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	2 cut(s)	83, 1294
Eco31I	GGTCTC	2 cut(s)	239, 1271
Eco47I	GGWCC	6 cut(s)	13, 230, 236, 336, 436, 507
Eco57I	CTGAAG	2 cut(s)	213, 1839
Eco81I	CCTNAGG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	1247
EcoNI	CCTNNNNNAGG	1 cut(s)	1298
EcoO109I	RGGNCCY	2 cut(s)	1303, 1643
EcoO65I	GGTNACC	1 cut(s)	1247
EcoRI	GAATTC	2 cut(s)	970, 2291
EcoRII	CCWGG	6 cut(s)	497, 530, 728, 784, 1380, 2126
EcoT22I	ATGCAT	1 cut(s)	1953
EcoT38I	GRGCYC	2 cut(s)	83, 1294
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	6 cut(s)	1043, 1402, 1955, 1993, 2194, 2234
FalI	AAGNNNNNCTT	4 cut(s)	1799, 1831, 2219, 2251
FaqI	GGGAC	4 cut(s)	422, 1096, 1409, 1439
FatI	CATG	6 cut(s)	1039, 1398, 1951, 1989, 2190, 2230
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	1837
FbaI	TGATCA	1 cut(s)	2346
FblI	GTMKAC	3 cut(s)	357, 399, 579
Fnu4HI	GCNGC	8 cut(s)	9, 331, 726, 834, 837, 911, 1677, 1983
FokI	GGATG	8 cut(s)	173, 1238, 1823, 1907, 1984, 2137, 2208, 2284
FriOI	GRGCYC	2 cut(s)	83, 1294
Fsp4HI	GCNGC	8 cut(s)	9, 331, 726, 834, 837, 911, 1677, 1983
FspBI	CTAG	3 cut(s)	629, 884, 1652
GlaI	GCGC	2 cut(s)	150, 1659
GluI	GCNGC	8 cut(s)	9, 331, 726, 834, 837, 911, 1677, 1983
GsuI	CTGGAG	4 cut(s)	566, 581, 807, 1935
HaeII	RGCGCY	1 cut(s)	152
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	151, 1660
Hin1I	GRCGYC	2 cut(s)	30, 271
Hin1II	CATG	6 cut(s)	1043, 1402, 1955, 1993, 2194, 2234
Hin6I	GCGC	2 cut(s)	149, 1658
HinP1I	GCGC	2 cut(s)	149, 1658
HincII	GTYRAC	3 cut(s)	358, 528, 580
HindII	GTYRAC	3 cut(s)	358, 528, 580
HindIII	AAGCTT	3 cut(s)	585, 1031, 1095
HphI	GGTGA	6 cut(s)	58, 853, 937, 1259, 2270, 2341
Hpy166II	GTNNAC	6 cut(s)	358, 400, 528, 580, 1369, 1794
Hpy8I	GTNNAC	6 cut(s)	358, 400, 528, 580, 1369, 1794
Hpy99I	CGWCG	7 cut(s)	32, 35, 136, 273, 279, 319, 479
HpyAV	CCTTC	8 cut(s)	266, 764, 1316, 1429, 1801, 2004, 2245, 2249
HpyCH4III	ACNGT	3 cut(s)	1330, 1414, 2385
HpyCH4IV	ACGT	2 cut(s)	30, 432
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 374, 710, 907, 1094, 1664, 1673, 1919
HpyF3I	CTNAG	9 cut(s)	84, 675, 1034, 1122, 1581, 1736, 1964, 2243, 2324
HpySE526I	ACGT	2 cut(s)	30, 432
Hsp92I	GRCGYC	2 cut(s)	30, 271
Hsp92II	CATG	6 cut(s)	1043, 1402, 1955, 1993, 2194, 2234
HspAI	GCGC	2 cut(s)	149, 1658
Kpn2I	TCCGGA	2 cut(s)	480, 1771
Ksp22I	TGATCA	1 cut(s)	2346
LmnI	GCTCC	9 cut(s)	298, 535, 562, 604, 637, 701, 907, 1955, 2103
Lsp1109I	GCAGC	6 cut(s)	20, 820, 848, 897, 1663, 1969
LweI	GCATC	3 cut(s)	1165, 1471, 1663
MaeI	CTAG	3 cut(s)	629, 884, 1652
MaeII	ACGT	2 cut(s)	30, 432
MaeIII	GTNAC	1 cut(s)	1247
MbiI	CCGCTC	1 cut(s)	72
MfeI	CAATTG	2 cut(s)	902, 1443
MflI	RGATCY	4 cut(s)	931, 1126, 1585, 2137
MhlI	GDGCHC	4 cut(s)	83, 609, 1294, 1796
MlsI	TGGCCA	2 cut(s)	323, 1380
MluNI	TGGCCA	2 cut(s)	323, 1380
MlyI	GAGTC	4 cut(s)	155, 167, 395, 557
MmeI	TCCRAC	2 cut(s)	1707, 2166
Mox20I	TGGCCA	2 cut(s)	323, 1380
Mph1103I	ATGCAT	1 cut(s)	1953
MroI	TCCGGA	2 cut(s)	480, 1771
MroXI	GAANNNNTTC	3 cut(s)	290, 1098, 1779
MscI	TGGCCA	2 cut(s)	323, 1380
MseI	TTAA	9 cut(s)	642, 1005, 1059, 1431, 1683, 2037, 2093, 2166, 2216
MslI	CAYNNNNRTG	1 cut(s)	1190
Msp20I	TGGCCA	2 cut(s)	323, 1380
MspA1I	CMGCKG	2 cut(s)	11, 839
MspCI	CTTAAG	1 cut(s)	1430
MspR9I	CCNGG	9 cut(s)	225, 234, 499, 532, 730, 786, 1266, 1382, 2128
MunI	CAATTG	2 cut(s)	902, 1443
Mva1269I	GAATGC	1 cut(s)	1146
MvaI	CCWGG	6 cut(s)	499, 532, 730, 786, 1382, 2128
MwoI	GCNNNNNNNGC	8 cut(s)	78, 374, 710, 907, 1094, 1664, 1673, 1919
NciI	CCSGG	3 cut(s)	225, 234, 1266
NdeI	CATATG	1 cut(s)	1837
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	6 cut(s)	1043, 1402, 1955, 1993, 2194, 2234
NlaIV	GGNNCC	9 cut(s)	138, 237, 438, 485, 878, 1128, 1587, 1776, 2139
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	1247
NsiI	ATGCAT	1 cut(s)	1953
NspI	RCATGY	3 cut(s)	1043, 1993, 2234
NspV	TTCGAA	1 cut(s)	1102
PaeI	GCATGC	1 cut(s)	2234
PaqCI	CACCTGC	1 cut(s)	2360
PceI	AGGCCT	1 cut(s)	784
PciI	ACATGT	1 cut(s)	1989
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 128, 429
PctI	GAATGC	1 cut(s)	1146
PdmI	GAANNNNTTC	3 cut(s)	290, 1098, 1779
PfeI	GAWTC	6 cut(s)	44, 104, 553, 1709, 2144, 2339
PflFI	GACNNNGTC	3 cut(s)	32, 234, 273
PfoI	TCCNGGA	1 cut(s)	1264
PkrI	GCNGC	8 cut(s)	10, 332, 727, 835, 838, 912, 1678, 1984
PleI	GAGTC	4 cut(s)	155, 167, 395, 556
PpsI	GAGTC	4 cut(s)	155, 167, 395, 556
PscI	ACATGT	1 cut(s)	1989
PsiI	TTATAA	1 cut(s)	1539
Psp6I	CCWGG	6 cut(s)	497, 530, 728, 784, 1380, 2126
PspEI	GGTNACC	1 cut(s)	1247
PspGI	CCWGG	6 cut(s)	497, 530, 728, 784, 1380, 2126
PspN4I	GGNNCC	9 cut(s)	138, 237, 438, 485, 878, 1128, 1587, 1776, 2139
PspPI	GGNCC	8 cut(s)	13, 230, 236, 336, 436, 507, 1303, 1643
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	4 cut(s)	931, 1126, 1585, 2137
PsyI	GACNNNGTC	3 cut(s)	32, 234, 273
PvuII	CAGCTG	1 cut(s)	839
RseI	CAYNNNNRTG	1 cut(s)	1190
Rsr2I	CGGWCCG	2 cut(s)	230, 336
RsrII	CGGWCCG	2 cut(s)	230, 336
SalI	GTCGAC	2 cut(s)	356, 578
SaqAI	TTAA	9 cut(s)	642, 1005, 1059, 1431, 1683, 2037, 2093, 2166, 2216
SatI	GCNGC	8 cut(s)	9, 331, 726, 834, 837, 911, 1677, 1983
Sau96I	GGNCC	8 cut(s)	13, 230, 236, 336, 436, 507, 1303, 1643
SchI	GAGTC	4 cut(s)	155, 167, 395, 557
ScrFI	CCNGG	9 cut(s)	225, 234, 499, 532, 730, 786, 1266, 1382, 2128
SduI	GDGCHC	4 cut(s)	83, 609, 1294, 1796
SfaNI	GCATC	3 cut(s)	1165, 1471, 1663
SfcI	CTRYAG	2 cut(s)	834, 1065
SfuI	TTCGAA	1 cut(s)	1102
SinI	GGWCC	6 cut(s)	13, 230, 236, 336, 436, 507
SmiMI	CAYNNNNRTG	1 cut(s)	1190
SmlI	CTYRAG	2 cut(s)	165, 1430
SmoI	CTYRAG	2 cut(s)	165, 1430
SphI	GCATGC	1 cut(s)	2234
SseBI	AGGCCT	1 cut(s)	784
SspMI	CTAG	3 cut(s)	629, 884, 1652
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	9 cut(s)	223, 232, 497, 530, 728, 784, 1264, 1380, 2126
TaaI	ACNGT	3 cut(s)	1330, 1414, 2385
TaiI	ACGT	2 cut(s)	33, 435
TaqI	TCGA	9 cut(s)	77, 317, 357, 423, 551, 579, 1102, 1390, 2121
TaqII	GACCGA	1 cut(s)	353
TauI	GCSGC	2 cut(s)	333, 728
TfiI	GAWTC	6 cut(s)	44, 104, 553, 1709, 2144, 2339
Tru1I	TTAA	9 cut(s)	642, 1005, 1059, 1431, 1683, 2037, 2093, 2166, 2216
Tru9I	TTAA	9 cut(s)	642, 1005, 1059, 1431, 1683, 2037, 2093, 2166, 2216
TscAI	CASTG	4 cut(s)	1095, 1417, 1794, 1972
TseFI	GTSAC	1 cut(s)	1247
TseI	GCWGC	6 cut(s)	8, 833, 836, 910, 1676, 1982
Tsp45I	GTSAC	1 cut(s)	1247
TspDTI	ATGAA	5 cut(s)	222, 827, 908, 1824, 2139
TspGWI	ACGGA	4 cut(s)	303, 311, 1065, 1578
TspRI	CASTG	4 cut(s)	1095, 1417, 1794, 1972
Tth111I	GACNNNGTC	3 cut(s)	32, 234, 273
Vha464I	CTTAAG	1 cut(s)	1430
VneI	GTGCAC	1 cut(s)	1792
VpaK11BI	GGWCC	6 cut(s)	13, 230, 236, 336, 436, 507
XagI	CCTNNNNNAGG	1 cut(s)	1298
XapI	RAATTY	5 cut(s)	970, 1448, 2033, 2284, 2291
XceI	RCATGY	3 cut(s)	1043, 1993, 2234
XmiI	GTMKAC	3 cut(s)	357, 399, 579
XmnI	GAANNNNTTC	3 cut(s)	290, 1098, 1779
XspI	CTAG	3 cut(s)	629, 884, 1652
ZraI	GACGTC	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	1953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.