Lysine-specific histone demethylase 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G62830 |
| fragaria_vesca | FvH4_2g37680 |
| malus_domestica | MD08G1004400.v1.1 MD15G1003800.v1.1 |
| prunus_persica | Prupe.1G356300_v2.0.a1 |
| pyrus_communis | pycom08g00320 pycom15g00270 |
| rosa_chinensis | RchiOBHm_Chr6g0304051 |
| rosa_laevigata | RLG00000011022 |
| rosa_multiflora | Rmu_sc0003805.1_g000012 |
| rosa_roxburghii | Rroxscaffold_7G00164150 |
| rosa_rugosa | Rorug06G0327300 |
| rosa_samantha | Rh6AG441100 Rh6BG461700 Rh6CG453300 Rh6DG440600 |
| rosa_wichuraiana | Rw6G038220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1566 |
| AatII | GACGTC | 2 cut(s) | 42, 301 |
| AccB1I | GGYRCC | 1 cut(s) | 2369 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 520 |
| AccBSI | CCGCTC | 1 cut(s) | 970 |
| AccI | GTMKAC | 2 cut(s) | 426, 606 |
| AccII | CGCG | 2 cut(s) | 822, 1419 |
| AclWI | GGATC | 7 cut(s) | 876, 1250, 1254, 1311, 1607, 1620, 2147 |
| AcoI | YGGCCR | 2 cut(s) | 288, 738 |
| AcsI | RAATTY | 6 cut(s) | 685, 997, 1475, 2201, 2330, 2430 |
| AcuI | CTGAAG | 1 cut(s) | 1866 |
| AcyI | GRCGYC | 2 cut(s) | 39, 298 |
| AdeI | CACNNNGTG | 1 cut(s) | 1827 |
| AfaI | GTAC | 1 cut(s) | 1373 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 127, 473, 520, 565, 696, 913, 1327, 1810 |
| AflII | CTTAAG | 1 cut(s) | 1457 |
| AgsI | TTSAA | 8 cut(s) | 685, 781, 1475, 1540, 1777, 2098, 2262, 2435 |
| AjiI | CACGTC | 2 cut(s) | 1133, 2224 |
| AjnI | CCWGG | 4 cut(s) | 262, 600, 811, 2156 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 503, 530, 535, 562, 1736, 1768 |
| Alw21I | GWGCWC | 4 cut(s) | 330, 594, 636, 1823 |
| Alw26I | GTCTC | 6 cut(s) | 289, 547, 1298, 1731, 2237, 2243 |
| Alw44I | GTGCAC | 1 cut(s) | 1819 |
| AlwI | GGATC | 7 cut(s) | 876, 1250, 1254, 1311, 1607, 1620, 2147 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2241 |
| Ama87I | CYCGRG | 1 cut(s) | 558 |
| AoxI | GGCC | 9 cut(s) | 241, 288, 598, 738, 809, 1236, 1330, 1670, 1947 |
| ApaLI | GTGCAC | 1 cut(s) | 1819 |
| ApeKI | GCWGC | 4 cut(s) | 860, 863, 1703, 2009 |
| ApoI | RAATTY | 6 cut(s) | 685, 997, 1475, 2201, 2330, 2430 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 314, 1125 |
| AspLEI | GCGC | 2 cut(s) | 571, 822 |
| AspS9I | GGNCC | 9 cut(s) | 13, 266, 281, 363, 463, 534, 1330, 1441, 1670 |
| AsuC2I | CCSGG | 5 cut(s) | 279, 559, 560, 1293, 2374 |
| AsuHPI | GGTGA | 9 cut(s) | 98, 880, 964, 1286, 1640, 2209, 2309, 2350, 2380 |
| AvaI | CYCGRG | 1 cut(s) | 558 |
| AvaII | GGWCC | 7 cut(s) | 13, 266, 281, 363, 463, 534, 1441 |
| AxyI | CCTNAGG | 1 cut(s) | 1105 |
| BaeGI | GKGCMC | 1 cut(s) | 1823 |
| BamHI | GGATCC | 1 cut(s) | 1612 |
| BanI | GGYRCC | 1 cut(s) | 2369 |
| BanII | GRGCYC | 3 cut(s) | 204, 279, 330 |
| BbsI | GAAGAC | 4 cut(s) | 37, 225, 833, 1872 |
| Bbv12I | GWGCWC | 4 cut(s) | 330, 594, 636, 1823 |
| BbvI | GCAGC | 4 cut(s) | 847, 875, 1690, 1996 |
| BccI | CCATC | 8 cut(s) | 212, 689, 977, 1261, 1376, 1916, 2059, 2417 |
| BceAI | ACGGC | 2 cut(s) | 652, 1390 |
| BciT130I | CCWGG | 4 cut(s) | 264, 602, 813, 2158 |
| BciVI | GTATCC | 1 cut(s) | 1974 |
| BclI | TGATCA | 1 cut(s) | 232 |
| BcnI | CCSGG | 5 cut(s) | 279, 559, 560, 1293, 2374 |
| BcoDI | GTCTC | 6 cut(s) | 289, 547, 1298, 1731, 2237, 2243 |
| BfaI | CTAG | 5 cut(s) | 924, 1014, 1824, 2178, 2417 |
| BfmI | CTRYAG | 1 cut(s) | 861 |
| BfoI | RGCGCY | 1 cut(s) | 572 |
| BfrI | CTTAAG | 1 cut(s) | 1457 |
| BfuI | GTATCC | 1 cut(s) | 1974 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 817 |
| BisI | GCNGC | 6 cut(s) | 478, 753, 861, 864, 1704, 2010 |
| BlsI | GCNGC | 6 cut(s) | 479, 754, 862, 865, 1705, 2011 |
| Bme1390I | CCNGG | 9 cut(s) | 264, 279, 559, 560, 602, 813, 1293, 2158, 2374 |
| Bme18I | GGWCC | 7 cut(s) | 13, 266, 281, 363, 463, 534, 1441 |
| BmeT110I | CYCGRG | 1 cut(s) | 558 |
| BmgBI | CACGTC | 2 cut(s) | 1133, 2224 |
| BmgT120I | GGNCC | 9 cut(s) | 13, 266, 281, 363, 463, 534, 1330, 1441, 1670 |
| BmiI | GGNNCC | 8 cut(s) | 15, 465, 512, 1443, 1468, 1614, 1984, 2371 |
| BmrFI | CCNGG | 9 cut(s) | 264, 279, 559, 560, 602, 813, 1293, 2158, 2374 |
| BmrI | ACTGGG | 1 cut(s) | 941 |
| BmsI | GCATC | 5 cut(s) | 154, 1192, 1498, 1690, 1828 |
| BmuI | ACTGGG | 1 cut(s) | 941 |
| BpiI | GAAGAC | 4 cut(s) | 37, 225, 833, 1872 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1974, 2006 |
| BpmI | CTGGAG | 3 cut(s) | 593, 1716, 1962 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1061 |
| BpuEI | CTTGAG | 1 cut(s) | 168 |
| BpuMI | CCSGG | 5 cut(s) | 279, 559, 560, 1293, 2374 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1182 |
| BsaHI | GRCGYC | 2 cut(s) | 39, 298 |
| BsaI | GGTCTC | 1 cut(s) | 1298 |
| BsaJI | CCNNGG | 4 cut(s) | 558, 1233, 2156, 2373 |
| BsaWI | WCCGGW | 3 cut(s) | 169, 421, 890 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2344, 2374 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 127, 473, 520, 565, 696, 913, 1327, 1810 |
| Bse118I | RCCGGY | 3 cut(s) | 286, 661, 740 |
| Bse1I | ACTGG | 2 cut(s) | 768, 936 |
| Bse21I | CCTNAGG | 1 cut(s) | 1105 |
| Bse3DI | GCAATG | 3 cut(s) | 718, 1077, 1306 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1182 |
| BseBI | CCWGG | 4 cut(s) | 264, 602, 813, 2158 |
| BseDI | CCNNGG | 4 cut(s) | 558, 1233, 2156, 2373 |
| BseGI | GGATG | 6 cut(s) | 204, 1258, 1843, 1927, 2234, 2316 |
| BseJI | GATNNNNATC | 1 cut(s) | 1182 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 127, 473, 520, 565, 696, 913, 1327, 1810 |
| BseMI | GCAATG | 3 cut(s) | 718, 1077, 1306 |
| BseMII | CTCAG | 9 cut(s) | 96, 189, 423, 624, 1599, 2005, 2012, 2248, 2273 |
| BseNI | ACTGG | 2 cut(s) | 768, 936 |
| BseRI | GAGGAG | 2 cut(s) | 455, 458 |
| BseSI | GKGCMC | 1 cut(s) | 1823 |
| BseXI | GCAGC | 4 cut(s) | 847, 875, 1690, 1996 |
| BseYI | CCCAGC | 1 cut(s) | 253 |
| BsgI | GTGCAG | 1 cut(s) | 1098 |
| Bsh1236I | CGCG | 2 cut(s) | 822, 1419 |
| Bsh1285I | CGRYCG | 1 cut(s) | 426 |
| BshFI | GGCC | 9 cut(s) | 243, 290, 600, 740, 811, 1238, 1332, 1672, 1949 |
| BshNI | GGYRCC | 1 cut(s) | 2369 |
| BsiEI | CGRYCG | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 4 cut(s) | 330, 594, 636, 1823 |
| BsiHKCI | CYCGRG | 1 cut(s) | 558 |
| BslFI | GGGAC | 6 cut(s) | 449, 971, 1123, 1427, 1436, 1466 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 127, 473, 520, 565, 696, 913, 1327, 1810 |
| BsmAI | GTCTC | 6 cut(s) | 289, 547, 1298, 1731, 2237, 2243 |
| BsmBI | CGTCTC | 1 cut(s) | 289 |
| BsmFI | GGGAC | 6 cut(s) | 449, 971, 1123, 1427, 1436, 1466 |
| BsnI | GGCC | 9 cut(s) | 243, 290, 600, 740, 811, 1238, 1332, 1672, 1949 |
| Bso31I | GGTCTC | 1 cut(s) | 1298 |
| BsoBI | CYCGRG | 1 cut(s) | 558 |
| Bsp1286I | GDGCHC | 6 cut(s) | 204, 279, 330, 594, 636, 1823 |
| Bsp19I | CCATGG | 1 cut(s) | 1233 |
| BspANI | GGCC | 9 cut(s) | 243, 290, 600, 740, 811, 1238, 1332, 1672, 1949 |
| BspCNI | CTCAG | 9 cut(s) | 95, 190, 422, 623, 1600, 2004, 2013, 2247, 2274 |
| BspFNI | CGCG | 2 cut(s) | 822, 1419 |
| BspLI | GGNNCC | 8 cut(s) | 15, 465, 512, 1443, 1468, 1614, 1984, 2371 |
| BspMAI | CTGCAG | 1 cut(s) | 865 |
| BspPI | GGATC | 7 cut(s) | 876, 1250, 1254, 1311, 1607, 1620, 2147 |
| BspT107I | GGYRCC | 1 cut(s) | 2369 |
| BspTI | CTTAAG | 1 cut(s) | 1457 |
| BspTNI | GGTCTC | 1 cut(s) | 1298 |
| BsrBI | CCGCTC | 1 cut(s) | 970 |
| BsrDI | GCAATG | 3 cut(s) | 718, 1077, 1306 |
| BsrFI | RCCGGY | 3 cut(s) | 286, 661, 740 |
| BsrI | ACTGG | 2 cut(s) | 768, 936 |
| BssAI | RCCGGY | 3 cut(s) | 286, 661, 740 |
| BssECI | CCNNGG | 4 cut(s) | 558, 1233, 2156, 2373 |
| BssNI | GRCGYC | 2 cut(s) | 39, 298 |
| BssT1I | CCWWGG | 1 cut(s) | 1233 |
| Bst2UI | CCWGG | 4 cut(s) | 264, 602, 813, 2158 |
| Bst4CI | ACNGT | 3 cut(s) | 1357, 1441, 2190 |
| Bst6I | CTCTTC | 4 cut(s) | 948, 1660, 1680, 2295 |
| BstACI | GRCGYC | 2 cut(s) | 39, 298 |
| BstAFI | CTTAAG | 1 cut(s) | 1457 |
| BstC8I | GCNNGC | 6 cut(s) | 288, 489, 567, 657, 968, 1068 |
| BstDSI | CCRYGG | 1 cut(s) | 1233 |
| BstEII | GGTNACC | 1 cut(s) | 1274 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1325 |
| BstF5I | GGATG | 6 cut(s) | 204, 1258, 1843, 1927, 2234, 2316 |
| BstFNI | CGCG | 2 cut(s) | 822, 1419 |
| BstH2I | RGCGCY | 1 cut(s) | 572 |
| BstHHI | GCGC | 2 cut(s) | 571, 822 |
| BstMAI | GTCTC | 6 cut(s) | 289, 547, 1298, 1731, 2237, 2243 |
| BstMCI | CGRYCG | 1 cut(s) | 426 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 283, 401, 737, 817, 1121, 1691, 1700, 1946 |
| BstNI | CCWGG | 4 cut(s) | 264, 602, 813, 2158 |
| BstPI | GGTNACC | 1 cut(s) | 1274 |
| BstSCI | CCNGG | 9 cut(s) | 262, 277, 557, 558, 600, 811, 1291, 2156, 2372 |
| BstSFI | CTRYAG | 1 cut(s) | 861 |
| BstSLI | GKGCMC | 1 cut(s) | 1823 |
| BstUI | CGCG | 2 cut(s) | 822, 1419 |
| BstV1I | GCAGC | 4 cut(s) | 847, 875, 1690, 1996 |
| BstV2I | GAAGAC | 4 cut(s) | 37, 225, 833, 1872 |
| BstX2I | RGATCY | 2 cut(s) | 868, 1612 |
| BstYI | RGATCY | 2 cut(s) | 868, 1612 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1105 |
| BsuI | GTATCC | 1 cut(s) | 1974 |
| BsuRI | GGCC | 9 cut(s) | 243, 290, 600, 740, 811, 1238, 1332, 1672, 1949 |
| BtgI | CCRYGG | 1 cut(s) | 1233 |
| BtgZI | GCGATG | 1 cut(s) | 42 |
| BtrI | CACGTC | 2 cut(s) | 1133, 2224 |
| BtsCI | GGATG | 6 cut(s) | 204, 1258, 1843, 1927, 2234, 2316 |
| BtsI | GCAGTG | 2 cut(s) | 999, 1821 |
| BtsIMutI | CAGTG | 5 cut(s) | 417, 999, 1821, 1999, 2186 |
| Cac8I | GCNNGC | 6 cut(s) | 288, 489, 567, 657, 968, 1068 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2241 |
| CfoI | GCGC | 2 cut(s) | 571, 822 |
| Cfr10I | RCCGGY | 3 cut(s) | 286, 661, 740 |
| Cfr13I | GGNCC | 9 cut(s) | 13, 266, 281, 363, 463, 534, 1330, 1441, 1670 |
| Cfr9I | CCCGGG | 1 cut(s) | 558 |
| CpoI | CGGWCCG | 2 cut(s) | 281, 363 |
| CsiI | ACCWGGT | 1 cut(s) | 262 |
| Csp6I | GTAC | 1 cut(s) | 1372 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 393, 428 |
| CspI | CGGWCCG | 2 cut(s) | 281, 363 |
| CviAII | CATG | 3 cut(s) | 1234, 1426, 1979 |
| CviQI | GTAC | 1 cut(s) | 1372 |
| DraI | TTTAAA | 1 cut(s) | 2364 |
| DraIII | CACNNNGTG | 1 cut(s) | 1827 |
| EaeI | YGGCCR | 2 cut(s) | 288, 738 |
| Eam1104I | CTCTTC | 4 cut(s) | 948, 1660, 1680, 2295 |
| EarI | CTCTTC | 4 cut(s) | 948, 1660, 1680, 2295 |
| EciI | GGCGGA | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 1 cut(s) | 328 |
| Eco130I | CCWWGG | 1 cut(s) | 1233 |
| Eco147I | AGGCCT | 3 cut(s) | 243, 600, 811 |
| Eco24I | GRGCYC | 3 cut(s) | 204, 279, 330 |
| Eco31I | GGTCTC | 1 cut(s) | 1298 |
| Eco47I | GGWCC | 7 cut(s) | 13, 266, 281, 363, 463, 534, 1441 |
| Eco53kI | GAGCTC | 1 cut(s) | 328 |
| Eco57I | CTGAAG | 1 cut(s) | 1866 |
| Eco81I | CCTNAGG | 1 cut(s) | 1105 |
| Eco88I | CYCGRG | 1 cut(s) | 558 |
| Eco91I | GGTNACC | 1 cut(s) | 1274 |
| EcoICRI | GAGCTC | 1 cut(s) | 328 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1325 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1330, 1670 |
| EcoO65I | GGTNACC | 1 cut(s) | 1274 |
| EcoRI | GAATTC | 3 cut(s) | 685, 997, 2430 |
| EcoRII | CCWGG | 4 cut(s) | 262, 600, 811, 2156 |
| EcoT14I | CCWWGG | 1 cut(s) | 1233 |
| EcoT22I | ATGCAT | 1 cut(s) | 1980 |
| EcoT38I | GRGCYC | 3 cut(s) | 204, 279, 330 |
| ErhI | CCWWGG | 1 cut(s) | 1233 |
| Esp3I | CGTCTC | 1 cut(s) | 289 |
| FaeI | CATG | 3 cut(s) | 1237, 1429, 1982 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 210, 242, 302, 334, 1826, 1858 |
| FaqI | GGGAC | 6 cut(s) | 449, 971, 1123, 1427, 1436, 1466 |
| FatI | CATG | 3 cut(s) | 1233, 1425, 1978 |
| FauI | CCCGC | 3 cut(s) | 975, 1164, 1412 |
| FauNDI | CATATG | 2 cut(s) | 1849, 1864 |
| FbaI | TGATCA | 1 cut(s) | 232 |
| FblI | GTMKAC | 2 cut(s) | 426, 606 |
| Fnu4HI | GCNGC | 6 cut(s) | 478, 753, 861, 864, 1704, 2010 |
| FokI | GGATG | 6 cut(s) | 191, 1265, 1850, 1934, 2241, 2323 |
| FriOI | GRGCYC | 3 cut(s) | 204, 279, 330 |
| Fsp4HI | GCNGC | 6 cut(s) | 478, 753, 861, 864, 1704, 2010 |
| FspBI | CTAG | 5 cut(s) | 924, 1014, 1824, 2178, 2417 |
| GlaI | GCGC | 2 cut(s) | 570, 821 |
| GluI | GCNGC | 6 cut(s) | 478, 753, 861, 864, 1704, 2010 |
| GsaI | CCCAGC | 1 cut(s) | 257 |
| GsuI | CTGGAG | 3 cut(s) | 593, 1716, 1962 |
| HaeII | RGCGCY | 1 cut(s) | 572 |
| HaeIII | GGCC | 9 cut(s) | 243, 290, 600, 740, 811, 1238, 1332, 1672, 1949 |
| HhaI | GCGC | 2 cut(s) | 571, 822 |
| Hin1I | GRCGYC | 2 cut(s) | 39, 298 |
| Hin1II | CATG | 3 cut(s) | 1237, 1429, 1982 |
| Hin6I | GCGC | 2 cut(s) | 569, 820 |
| HinP1I | GCGC | 2 cut(s) | 569, 820 |
| HincII | GTYRAC | 4 cut(s) | 385, 427, 555, 607 |
| HindII | GTYRAC | 4 cut(s) | 385, 427, 555, 607 |
| HindIII | AAGCTT | 1 cut(s) | 1122 |
| HphI | GGTGA | 9 cut(s) | 98, 880, 964, 1286, 1640, 2209, 2309, 2350, 2380 |
| Hpy166II | GTNNAC | 6 cut(s) | 385, 427, 555, 607, 1396, 1821 |
| Hpy8I | GTNNAC | 6 cut(s) | 385, 427, 555, 607, 1396, 1821 |
| HpyCH4III | ACNGT | 3 cut(s) | 1357, 1441, 2190 |
| HpyCH4IV | ACGT | 7 cut(s) | 39, 298, 381, 387, 459, 1132, 2223 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 283, 401, 737, 817, 1121, 1691, 1700, 1946 |
| HpySE526I | ACGT | 7 cut(s) | 39, 298, 381, 387, 459, 1132, 2223 |
| Hsp92I | GRCGYC | 2 cut(s) | 39, 298 |
| Hsp92II | CATG | 3 cut(s) | 1237, 1429, 1982 |
| HspAI | GCGC | 2 cut(s) | 569, 820 |
| KroI | GCCGGC | 1 cut(s) | 286 |
| KroNI | GCCGGC | 1 cut(s) | 288 |
| Ksp22I | TGATCA | 1 cut(s) | 232 |
| LmnI | GCTCC | 8 cut(s) | 172, 325, 562, 589, 631, 1162, 1982, 2133 |
| Lsp1109I | GCAGC | 4 cut(s) | 847, 875, 1690, 1996 |
| LweI | GCATC | 5 cut(s) | 154, 1192, 1498, 1690, 1828 |
| MabI | ACCWGGT | 1 cut(s) | 262 |
| MaeI | CTAG | 5 cut(s) | 924, 1014, 1824, 2178, 2417 |
| MaeII | ACGT | 7 cut(s) | 39, 298, 381, 387, 459, 1132, 2223 |
| MaeIII | GTNAC | 2 cut(s) | 1274, 2180 |
| MbiI | CCGCTC | 1 cut(s) | 970 |
| MflI | RGATCY | 2 cut(s) | 868, 1612 |
| MhlI | GDGCHC | 6 cut(s) | 204, 279, 330, 594, 636, 1823 |
| MlyI | GAGTC | 9 cut(s) | 62, 151, 173, 185, 215, 422, 584, 602, 1745 |
| MmeI | TCCRAC | 3 cut(s) | 108, 1734, 2436 |
| Mph1103I | ATGCAT | 1 cut(s) | 1980 |
| MroNI | GCCGGC | 1 cut(s) | 286 |
| MroXI | GAANNNNTTC | 2 cut(s) | 314, 1125 |
| MspA1I | CMGCKG | 1 cut(s) | 866 |
| MspCI | CTTAAG | 1 cut(s) | 1457 |
| MspR9I | CCNGG | 9 cut(s) | 264, 279, 559, 560, 602, 813, 1293, 2158, 2374 |
| MvaI | CCWGG | 4 cut(s) | 264, 602, 813, 2158 |
| MvnI | CGCG | 2 cut(s) | 822, 1419 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 283, 401, 737, 817, 1121, 1691, 1700, 1946 |
| NaeI | GCCGGC | 1 cut(s) | 288 |
| NciI | CCSGG | 5 cut(s) | 279, 559, 560, 1293, 2374 |
| NcoI | CCATGG | 1 cut(s) | 1233 |
| NdeI | CATATG | 2 cut(s) | 1849, 1864 |
| NgoMIV | GCCGGC | 1 cut(s) | 286 |
| NlaIII | CATG | 3 cut(s) | 1237, 1429, 1982 |
| NlaIV | GGNNCC | 8 cut(s) | 15, 465, 512, 1443, 1468, 1614, 1984, 2371 |
| NmeAIII | GCCGAG | 1 cut(s) | 298 |
| NmuCI | GTSAC | 1 cut(s) | 1274 |
| NsiI | ATGCAT | 1 cut(s) | 1980 |
| PceI | AGGCCT | 3 cut(s) | 243, 600, 811 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 45, 48, 134, 456, 1074 |
| PdiI | GCCGGC | 1 cut(s) | 288 |
| PdmI | GAANNNNTTC | 2 cut(s) | 314, 1125 |
| PfeI | GAWTC | 6 cut(s) | 580, 894, 1010, 2174, 2266, 2378 |
| PflFI | GACNNNGTC | 2 cut(s) | 41, 300 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 520 |
| PfoI | TCCNGGA | 1 cut(s) | 1291 |
| PkrI | GCNGC | 6 cut(s) | 479, 754, 862, 865, 1705, 2011 |
| PleI | GAGTC | 9 cut(s) | 61, 151, 173, 185, 215, 422, 583, 602, 1744 |
| PpsI | GAGTC | 9 cut(s) | 61, 151, 173, 185, 215, 422, 583, 602, 1744 |
| PsiI | TTATAA | 1 cut(s) | 1566 |
| Psp124BI | GAGCTC | 1 cut(s) | 330 |
| Psp6I | CCWGG | 4 cut(s) | 262, 600, 811, 2156 |
| PspEI | GGTNACC | 1 cut(s) | 1274 |
| PspFI | CCCAGC | 1 cut(s) | 253 |
| PspGI | CCWGG | 4 cut(s) | 262, 600, 811, 2156 |
| PspN4I | GGNNCC | 8 cut(s) | 15, 465, 512, 1443, 1468, 1614, 1984, 2371 |
| PspPI | GGNCC | 9 cut(s) | 13, 266, 281, 363, 463, 534, 1330, 1441, 1670 |
| PstI | CTGCAG | 1 cut(s) | 865 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2241 |
| PsuI | RGATCY | 2 cut(s) | 868, 1612 |
| PsyI | GACNNNGTC | 2 cut(s) | 41, 300 |
| RsaI | GTAC | 1 cut(s) | 1373 |
| RsaNI | GTAC | 1 cut(s) | 1372 |
| Rsr2I | CGGWCCG | 2 cut(s) | 281, 363 |
| RsrII | CGGWCCG | 2 cut(s) | 281, 363 |
| SacI | GAGCTC | 1 cut(s) | 330 |
| SalI | GTCGAC | 2 cut(s) | 425, 605 |
| SatI | GCNGC | 6 cut(s) | 478, 753, 861, 864, 1704, 2010 |
| Sau96I | GGNCC | 9 cut(s) | 13, 266, 281, 363, 463, 534, 1330, 1441, 1670 |
| SchI | GAGTC | 9 cut(s) | 62, 151, 173, 185, 215, 422, 584, 602, 1745 |
| ScrFI | CCNGG | 9 cut(s) | 264, 279, 559, 560, 602, 813, 1293, 2158, 2374 |
| SduI | GDGCHC | 6 cut(s) | 204, 279, 330, 594, 636, 1823 |
| SexAI | ACCWGGT | 1 cut(s) | 262 |
| SfaNI | GCATC | 5 cut(s) | 154, 1192, 1498, 1690, 1828 |
| SfcI | CTRYAG | 1 cut(s) | 861 |
| SgrAI | CRCCGGYG | 1 cut(s) | 661 |
| SinI | GGWCC | 7 cut(s) | 13, 266, 281, 363, 463, 534, 1441 |
| SmaI | CCCGGG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 2 cut(s) | 183, 1457 |
| SmoI | CTYRAG | 2 cut(s) | 183, 1457 |
| SseBI | AGGCCT | 3 cut(s) | 243, 600, 811 |
| SspI | AATATT | 1 cut(s) | 2216 |
| SspMI | CTAG | 5 cut(s) | 924, 1014, 1824, 2178, 2417 |
| SstI | GAGCTC | 1 cut(s) | 330 |
| StuI | AGGCCT | 3 cut(s) | 243, 600, 811 |
| StyD4I | CCNGG | 9 cut(s) | 262, 277, 557, 558, 600, 811, 1291, 2156, 2372 |
| StyI | CCWWGG | 1 cut(s) | 1233 |
| TaaI | ACNGT | 3 cut(s) | 1357, 1441, 2190 |
| TaiI | ACGT | 7 cut(s) | 42, 301, 384, 390, 462, 1135, 2226 |
| TaqI | TCGA | 9 cut(s) | 48, 426, 450, 578, 606, 702, 1077, 1119, 1129 |
| TaqII | GACCGA | 1 cut(s) | 380 |
| TauI | GCSGC | 2 cut(s) | 480, 755 |
| TfiI | GAWTC | 6 cut(s) | 580, 894, 1010, 2174, 2266, 2378 |
| TscAI | CASTG | 5 cut(s) | 417, 999, 1821, 1999, 2193 |
| TseFI | GTSAC | 1 cut(s) | 1274 |
| TseI | GCWGC | 4 cut(s) | 860, 863, 1703, 2009 |
| Tsp45I | GTSAC | 1 cut(s) | 1274 |
| TspDTI | ATGAA | 4 cut(s) | 854, 935, 1362, 1851 |
| TspGWI | ACGGA | 5 cut(s) | 26, 330, 338, 452, 1081 |
| TspMI | CCCGGG | 1 cut(s) | 558 |
| TspRI | CASTG | 5 cut(s) | 417, 999, 1821, 1999, 2193 |
| Tth111I | GACNNNGTC | 2 cut(s) | 41, 300 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 520 |
| Vha464I | CTTAAG | 1 cut(s) | 1457 |
| VneI | GTGCAC | 1 cut(s) | 1819 |
| VpaK11BI | GGWCC | 7 cut(s) | 13, 266, 281, 363, 463, 534, 1441 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1325 |
| XapI | RAATTY | 6 cut(s) | 685, 997, 1475, 2201, 2330, 2430 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1231 |
| XmaI | CCCGGG | 1 cut(s) | 558 |
| XmiI | GTMKAC | 2 cut(s) | 426, 606 |
| XmnI | GAANNNNTTC | 2 cut(s) | 314, 1125 |
| XspI | CTAG | 5 cut(s) | 924, 1014, 1824, 2178, 2417 |
| ZraI | GACGTC | 2 cut(s) | 40, 299 |
| Zsp2I | ATGCAT | 1 cut(s) | 1980 |