Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014492

Physical Location & Seq

Genomic Coordinates Forward (+)

48027090 .. 48029605

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCAGCCACCCCTTCATCCGCCACCTCACGTCCCTTCACCGCCGCCGTAACCCTCGCCGCCGGCGCTGCCGCATTCGCCGGAGTCGCGGCCGTCACGCACACTAACCCCACGAACCCATTTCTCCAGAACGCACTGAATTTCTTCCTCGCCGATCGCTCGCTGCCGCTTTGGGGCTCGCTGTCCCTGAACGACACTCCGGCCTCCGTCGTCGATTCCAAGACGGGGGTGTCGTTTCCGTCGGTGCTGGACGGGACTCGGCGACTTCTGGGAATTGGGTTGAGGAGAAAACGCGTGCTGGGGTTGAAGAACATCGATGTGTATGCATATGGTATTTATGCTGATGATATAGACGTAAAGAAATTACTCAGCAAAAAATATGGGAAATTGTCCCTTTCTGAACTCAAGCAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAAATTGAGCATCGGTTCTGTACGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGGTCAGATAATCAAGAATTGCTACAAAGATTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGATCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGACGGAAATGATGTAGGAAGCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCCTCTGTCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

286

Amino Acids

31.24

Weight (kDa)

9.01

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	104 - 276	7.1e-12	Chalcone isomerase like
Chalcone_3	PF16036	154 - 274	8e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62830
fragaria_vesca	FvH4_2g37680
malus_domestica	MD08G1004400.v1.1 MD15G1003800.v1.1
prunus_persica	Prupe.1G356300_v2.0.a1
pyrus_communis	pycom08g00320 pycom15g00270
rosa_chinensis	RchiOBHm_Chr6g0304051
rosa_laevigata	RLG00000011022
rosa_multiflora	Rmu_sc0003805.1_g000012
rosa_roxburghii	Rroxscaffold_7G00164150
rosa_rugosa	Rorug06G0327300
rosa_samantha	Rh6AG441100 Rh6BG461700 Rh6CG453300 Rh6DG440600
rosa_wichuraiana	Rw6G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccII	CGCG	2 cut(s)	137, 342
AciI	CCGC	8 cut(s)	13, 69, 90, 93, 108, 120, 137, 215
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	572, 836
AfaI	GTAC	3 cut(s)	480, 552, 708
AfiI	CCNNNNNNNGG	2 cut(s)	221, 273
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	355, 518, 646
AjiI	CACGTC	1 cut(s)	80
AluBI	AGCT	1 cut(s)	832
AluI	AGCT	1 cut(s)	832
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	3 cut(s)	138, 249, 840
ApeKI	GCWGC	2 cut(s)	116, 211
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	2 cut(s)	79, 803
AsuII	TTCGAA	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	103, 198
BceAI	ACGGC	2 cut(s)	80, 125
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BcnI	CCSGG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	7 cut(s)	93, 108, 117, 120, 138, 212, 215
BlsI	GCNGC	7 cut(s)	94, 109, 118, 121, 139, 213, 216
Bme1390I	CCNGG	1 cut(s)	699
BmgBI	CACGTC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	580, 696, 798
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	549, 753
BpmI	CTGGAG	2 cut(s)	36, 158
Bpu14I	TTCGAA	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	699
Bsa29I	ATCGAT	2 cut(s)	363, 770
BsaAI	YACGTR	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 273
Bse118I	RCCGGY	1 cut(s)	110
BseCI	ATCGAT	2 cut(s)	363, 770
BseGI	GGATG	2 cut(s)	65, 744
BseLI	CCNNNNNNNGG	2 cut(s)	221, 273
BseMII	CTCAG	2 cut(s)	47, 430
BseRI	GAGGAG	2 cut(s)	346, 581
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	103, 198
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	2 cut(s)	137, 342
Bsh1285I	CGRYCG	2 cut(s)	141, 205
BshFI	GGCC	3 cut(s)	140, 251, 842
BshVI	ATCGAT	2 cut(s)	363, 770
BsiEI	CGRYCG	2 cut(s)	141, 205
BsiSI	CCGG	4 cut(s)	111, 129, 248, 698
BslFI	GGGAC	4 cut(s)	66, 217, 316, 424
BslI	CCNNNNNNNGG	2 cut(s)	221, 273
BsmFI	GGGAC	4 cut(s)	66, 217, 316, 424
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	140, 251, 842
Bsp119I	TTCGAA	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	202, 671, 682
BspACI	CCGC	8 cut(s)	13, 69, 90, 93, 108, 120, 137, 215
BspANI	GGCC	3 cut(s)	140, 251, 842
BspCNI	CTCAG	2 cut(s)	46, 429
BspDI	ATCGAT	2 cut(s)	363, 770
BspFNI	CGCG	2 cut(s)	137, 342
BspLI	GGNNCC	3 cut(s)	580, 696, 798
BspPI	GGATC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	3 cut(s)	202, 671, 682
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	4 cut(s)	112, 209, 227, 344
BstDEI	CTNAG	2 cut(s)	33, 416
BstF5I	GGATG	2 cut(s)	65, 744
BstFNI	CGCG	2 cut(s)	137, 342
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	205, 674, 685
BstMBI	GATC	3 cut(s)	202, 671, 682
BstMCI	CGRYCG	2 cut(s)	141, 205
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 116, 125, 134, 537, 750
BstSCI	CCNGG	1 cut(s)	697
BstSNI	TACGTA	1 cut(s)	554
BstUI	CGCG	2 cut(s)	137, 342
BstV1I	GCAGC	2 cut(s)	103, 198
BstX2I	RGATCY	2 cut(s)	671, 682
BstYI	RGATCY	2 cut(s)	671, 682
BstZI	CGGCCG	1 cut(s)	138
Bsu15I	ATCGAT	2 cut(s)	363, 770
BsuRI	GGCC	3 cut(s)	140, 251, 842
BsuTUI	ATCGAT	2 cut(s)	363, 770
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	65, 744
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	4 cut(s)	112, 209, 227, 344
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
ClaI	ATCGAT	2 cut(s)	363, 770
Csp6I	GTAC	3 cut(s)	479, 551, 707
CviJI	RGCY	9 cut(s)	37, 56, 140, 225, 251, 702, 815, 832, 842
CviKI_1	RGCY	9 cut(s)	37, 56, 140, 225, 251, 702, 815, 832, 842
CviQI	GTAC	3 cut(s)	479, 551, 707
DdeI	CTNAG	2 cut(s)	33, 416
DpnI	GATC	3 cut(s)	204, 673, 684
DpnII	GATC	3 cut(s)	202, 671, 682
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	572, 836
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	227
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	4 cut(s)	66, 217, 316, 424
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	7 cut(s)	93, 108, 117, 120, 138, 212, 215
FokI	GGATG	2 cut(s)	52, 731
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	7 cut(s)	93, 108, 117, 120, 138, 212, 215
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	7 cut(s)	93, 108, 117, 120, 138, 212, 215
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	36, 158
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	140, 251, 842
HapII	CCGG	4 cut(s)	111, 129, 248, 698
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	6 cut(s)	132, 263, 304, 569, 630, 772
HpaII	CCGG	4 cut(s)	111, 129, 248, 698
HphI	GGTGA	2 cut(s)	79, 803
Hpy188I	TCNGA	3 cut(s)	448, 591, 607
Hpy188III	TCNNGA	4 cut(s)	175, 614, 776, 854
Hpy99I	CGWCG	3 cut(s)	260, 263, 292
HpyAV	CCTTC	4 cut(s)	31, 72, 94, 860
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	3 cut(s)	79, 402, 553
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 116, 125, 134, 537, 750
HpyF3I	CTNAG	2 cut(s)	33, 416
HpySE526I	ACGT	3 cut(s)	79, 402, 553
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	202, 671, 682
Lsp1109I	GCAGC	2 cut(s)	103, 198
LweI	GCATC	2 cut(s)	549, 753
MaeII	ACGT	3 cut(s)	79, 402, 553
MaeIII	GTNAC	3 cut(s)	97, 142, 502
MalI	GATC	3 cut(s)	204, 673, 684
MboI	GATC	3 cut(s)	202, 671, 682
MboII	GAAGA	3 cut(s)	184, 367, 833
MflI	RGATCY	2 cut(s)	671, 682
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	9 cut(s)	187, 321, 410, 434, 533, 617, 641, 654, 835
MluI	ACGCGT	1 cut(s)	340
MlyI	GAGTC	3 cut(s)	141, 298, 578
MnlI	CCTC	9 cut(s)	85, 113, 206, 262, 324, 559, 662, 787, 853
Mph1103I	ATGCAT	1 cut(s)	376
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	4 cut(s)	111, 129, 248, 698
MspR9I	CCNGG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	2 cut(s)	137, 342
MwoI	GCNNNNNNNGC	6 cut(s)	113, 116, 125, 134, 537, 750
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	699
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	202, 671, 682
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	580, 696, 798
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	142, 502
NsiI	ATGCAT	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	263, 630, 772
PkrI	GCNGC	7 cut(s)	94, 109, 118, 121, 139, 213, 216
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	3 cut(s)	140, 298, 577
PpsI	GAGTC	3 cut(s)	140, 298, 577
Ppu21I	YACGTR	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	580, 696, 798
PsuI	RGATCY	2 cut(s)	671, 682
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	480, 552, 708
RsaNI	GTAC	3 cut(s)	479, 551, 707
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	7 cut(s)	93, 108, 117, 120, 138, 212, 215
Sau3AI	GATC	3 cut(s)	202, 671, 682
SchI	GAGTC	3 cut(s)	141, 298, 578
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	7 cut(s)	77, 82, 405, 502, 556, 793, 834
SfaNI	GCATC	2 cut(s)	549, 753
SfuI	TTCGAA	1 cut(s)	712
SgrAI	CRCCGGYG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	9 cut(s)	187, 321, 410, 434, 533, 617, 641, 654, 835
SsiI	CCGC	8 cut(s)	13, 69, 90, 93, 108, 120, 137, 215
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	3 cut(s)	82, 405, 556
TaqI	TCGA	4 cut(s)	261, 363, 712, 770
TasI	AATT	9 cut(s)	187, 321, 410, 434, 533, 617, 641, 654, 835
TatI	WGTACW	2 cut(s)	478, 706
TauI	GCSGC	5 cut(s)	95, 110, 122, 140, 217
TfiI	GAWTC	3 cut(s)	263, 630, 772
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	142, 502
TseI	GCWGC	2 cut(s)	116, 211
Tsp45I	GTSAC	2 cut(s)	142, 502
TspDTI	ATGAA	2 cut(s)	54, 666
TspGWI	ACGGA	3 cut(s)	244, 276, 741
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.