AT1G63110

Phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009567
Physical Location & Seq
Forward (+)
23404688 .. 23408119
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63110.2

Sequence Viewer

Length: 1410 bp
ATGGCGGAGGAGCAGAAAATGAAGCAGCTAAGCCGATTCTGGATTTGGGCTTTATCTTCCATTGCTTTCCGATTGATCTTGATCTCCTTCCCGGGAAATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACCCCTCTCACCAGCATTCGCCGCCTTGCTGAAGGTTATTGGTTGAAGCAGGCATCGATGTCACCATATGCAGGATCTATGTATCATGGCTCACCATTGCTGCTCTCGGTTCTTGGACCTCTCACAGTTCAAAGGATTAAAGGGCAACCAAGTCACCTCTTGTGCAGCTTGGTTTTTGTTATTGCAGATATATTAAGTGCAATGCTTCTTCGAGCTATTGGTCAGAAACTCCAGATGGCTTATGGACTGAATGCGAGACTACTTGGTTTTCTTAAGTCATCAAGGGATAAAGTGATCCTACCTTGTGGTGATATTGCTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTGGGCTTATCAACTTCTCCCATCGAAAACCTGGCTGTCATATTGGCGCTTTTTGGAGCAGTTACACGACGAGTTCCTCTGGCAGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTATCCTGCTACTCTGACAATTCCAATAATCTTTCTATTGGGATATGGTTTGGATGCTCCTCCTATAAAATTGTTCCTTCAGACCAGAAGTGTAGAAAATGAGGAGAGTTCAACCTCTACTGTTTCTAAACAAGCCAAGTTGAAACAGACTACGCACCTTCCTTTCTTATGGAAAACAGTCGCACACTTCTTGTTCTGGGTACTTCTGTGGTCACTCTATGTGTTGATTTTATGTGCCTTATCACTGAATAAATATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTTAGTATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTATTCGACTTCTTCAGAAACTTTTTTCTGATAGTTTTACACGTAAATATTCTGTTCATGTTACTGCCCTTAGCCATAAGGTTGAAACATCGGCCATGTTTCCTGGCTTTCATATACTTAGCGATCTCCTCGATTCTTAAATCTTATCCTTCAGTCGGAGATTCGGCGTTATACTTGAGCTTATGGGCATTGTTTGTCAATGAGTTATTAGATATGAAGTTCTCGTTCTTCCTCTTCTGTGGATATCTCGGGATCTCTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAATGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCGTGCTTTCAGATCGTTTTCGTGGTTGAGAGCGTAAGCGCAATGCTAAACCATGACAGGGCGCTGAAGAGATCAAACTCAAACCATCGAGAAGTCAAGAGCTAA

Protein Analysis

469

Amino Acids

52.82

Weight (kDa)

9.5

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 29 - 362 4e-84 GPI transamidase subunit PIG-U
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca FvH4_5g01570 FvH4_5g01570
malus_domestica MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica Prupe.5G091900_v2.0.a1
pyrus_communis pycom04g05980 pycom06g07290
rosa_chinensis RchiOBHm_Chr7g0199111
rosa_laevigata RLG00000003814
rosa_multiflora Rmu_sc0006266.1_g000049
rosa_roxburghii Rroxscaffold_3G00257070
rosa_rugosa Rorug07G0052700 Rorug07G0052800
rosa_samantha Rh7BG179700 Rh7DG179200
rosa_wichuraiana Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 935
AccII CGCG 1 cut(s) 1307
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 3 cut(s) 5, 151, 1258
AclWI GGATC 3 cut(s) 211, 418, 1223
AcoI YGGCCR 1 cut(s) 1055
AcsI RAATTY 1 cut(s) 1276
AcuI CTGAAG 5 cut(s) 180, 671, 961, 1098, 1391
AfaI GTAC 2 cut(s) 810, 950
AfiI CCNNNNNNNGG 5 cut(s) 121, 200, 935, 1118, 1363
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 2 cut(s) 1003, 1305
AgsI TTSAA 7 cut(s) 175, 260, 720, 751, 886, 917, 1048
AjnI CCWGG 2 cut(s) 519, 1065
AluBI AGCT 5 cut(s) 28, 297, 344, 1143, 1407
AluI AGCT 5 cut(s) 28, 297, 344, 1143, 1407
Alw26I GTCTC 2 cut(s) 130, 379
AlwI GGATC 3 cut(s) 211, 418, 1223
Ama87I CYCGRG 2 cut(s) 91, 1211
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 1055
ApeKI GCWGC 5 cut(s) 25, 229, 294, 446, 572
ApoI RAATTY 1 cut(s) 1276
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 3 cut(s) 538, 1346, 1369
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 2 cut(s) 92, 93
AsuHPI GGTGA 6 cut(s) 130, 183, 213, 275, 449, 918
AvaI CYCGRG 2 cut(s) 91, 1211
AvaII GGWCC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BbvCI CCTCAGC 1 cut(s) 1226
BbvI GCAGC 5 cut(s) 37, 216, 306, 433, 584
BccI CCATC 3 cut(s) 358, 518, 1398
BciT130I CCWGG 2 cut(s) 521, 1067
BcnI CCSGG 2 cut(s) 92, 93
BcoDI GTCTC 2 cut(s) 130, 379
BfoI RGCGCY 2 cut(s) 539, 1370
BfrI CTTAAG 1 cut(s) 401
BglII AGATCT 1 cut(s) 919
BisI GCNGC 6 cut(s) 26, 151, 230, 295, 447, 573
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 6 cut(s) 27, 152, 231, 296, 448, 574
Bme1390I CCNGG 4 cut(s) 92, 93, 521, 1067
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 2 cut(s) 91, 1211
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 1264
BmrFI CCNGG 4 cut(s) 92, 93, 521, 1067
BmsI GCATC 3 cut(s) 191, 652, 1227
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 2 cut(s) 1033, 1226
Bpu1102I GCTNAGC 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 893, 1159
BpuMI CCSGG 2 cut(s) 92, 93
Bsa29I ATCGAT 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 1006
BsaBI GATNNNNATC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 2 cut(s) 118, 1265
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 200, 935, 1118, 1363
Bse3DI GCAATG 5 cut(s) 60, 224, 336, 588, 1353
Bse8I GATNNNNATC 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 2 cut(s) 521, 1067
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 121, 200, 935, 1118, 1363
BseMI GCAATG 5 cut(s) 60, 224, 336, 588, 1353
BseMII CTCAG 1 cut(s) 1240
BseRI GAGGAG 6 cut(s) 23, 657, 725, 890, 1081, 1214
BseXI GCAGC 5 cut(s) 37, 216, 306, 433, 584
BsgI GTGCAG 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 1307
BshFI GGCC 1 cut(s) 1057
BshVI ATCGAT 1 cut(s) 185
BsiHKCI CYCGRG 2 cut(s) 91, 1211
BsiSI CCGG 3 cut(s) 92, 119, 1266
BslI CCNNNNNNNGG 5 cut(s) 121, 200, 935, 1118, 1363
BsmAI GTCTC 2 cut(s) 130, 379
BsmI GAATGC 2 cut(s) 144, 385
BsnI GGCC 1 cut(s) 1057
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 2 cut(s) 91, 1211
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 3 cut(s) 5, 151, 1258
BspANI GGCC 1 cut(s) 1057
BspCNI CTCAG 1 cut(s) 1239
BspDI ATCGAT 1 cut(s) 185
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 1 cut(s) 1264
BspPI GGATC 3 cut(s) 211, 418, 1223
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 5 cut(s) 60, 224, 336, 588, 1353
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
Bst2UI CCWGG 2 cut(s) 521, 1067
Bst4CI ACNGT 3 cut(s) 256, 730, 787
Bst6I CTCTTC 3 cut(s) 115, 1202, 1367
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 1006
BstC8I GCNNGC 2 cut(s) 180, 1309
BstDEI CTNAG 6 cut(s) 29, 583, 908, 1033, 1081, 1226
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 1 cut(s) 1307
BstH2I RGCGCY 2 cut(s) 539, 1370
BstHHI GCGC 3 cut(s) 538, 1346, 1369
BstKTI GATC 9 cut(s) 78, 84, 206, 426, 922, 1089, 1218, 1320, 1379
BstMAI GTCTC 2 cut(s) 130, 379
BstMBI GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
BstMWI GCNNNNNNNGC 2 cut(s) 150, 1308
BstNI CCWGG 2 cut(s) 521, 1067
BstSCI CCNGG 4 cut(s) 90, 91, 519, 1065
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 5 cut(s) 37, 216, 306, 433, 584
BstX2I RGATCY 3 cut(s) 203, 919, 1215
BstYI RGATCY 3 cut(s) 203, 919, 1215
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 1 cut(s) 1057
BsuTUI ATCGAT 1 cut(s) 185
BtsCI GGATG 1 cut(s) 667
BtsIMutI CAGTG 1 cut(s) 851
Cac8I GCNNGC 2 cut(s) 180, 1309
CfoI GCGC 3 cut(s) 538, 1346, 1369
Cfr13I GGNCC 1 cut(s) 245
Cfr9I CCCGGG 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 2 cut(s) 809, 949
CviAII CATG 4 cut(s) 215, 1021, 1059, 1358
CviQI GTAC 2 cut(s) 809, 949
DdeI CTNAG 6 cut(s) 29, 583, 908, 1033, 1081, 1226
DpnI GATC 9 cut(s) 77, 83, 205, 425, 921, 1088, 1217, 1319, 1378
DpnII GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
EaeI YGGCCR 1 cut(s) 1055
Eam1104I CTCTTC 3 cut(s) 115, 1202, 1367
EarI CTCTTC 3 cut(s) 115, 1202, 1367
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 1208
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 5 cut(s) 180, 671, 961, 1098, 1391
Eco88I CYCGRG 2 cut(s) 91, 1211
EcoRII CCWGG 2 cut(s) 519, 1065
EcoRV GATATC 1 cut(s) 1208
FaeI CATG 4 cut(s) 218, 1024, 1062, 1361
FatI CATG 4 cut(s) 214, 1020, 1058, 1357
FauI CCCGC 1 cut(s) 1251
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 6 cut(s) 26, 151, 230, 295, 447, 573
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 6 cut(s) 26, 151, 230, 295, 447, 573
GlaI GCGC 3 cut(s) 537, 1345, 1368
GluI GCNGC 6 cut(s) 26, 151, 230, 295, 447, 573
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 2 cut(s) 539, 1370
HaeIII GGCC 1 cut(s) 1057
HapII CCGG 3 cut(s) 92, 119, 1266
HhaI GCGC 3 cut(s) 538, 1346, 1369
Hin1II CATG 4 cut(s) 218, 1024, 1062, 1361
Hin6I GCGC 3 cut(s) 536, 1344, 1367
HinP1I GCGC 3 cut(s) 536, 1344, 1367
HinfI GANTC 5 cut(s) 36, 466, 939, 1096, 1124
HpaII CCGG 3 cut(s) 92, 119, 1266
HphI GGTGA 6 cut(s) 130, 183, 213, 275, 449, 918
Hpy188I TCNGA 8 cut(s) 71, 354, 624, 690, 980, 993, 1121, 1317
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 5 cut(s) 97, 155, 695, 776, 1122
HpyCH4III ACNGT 3 cut(s) 256, 730, 787
HpyCH4IV ACGT 2 cut(s) 893, 1005
HpyCH4V TGCA 7 cut(s) 200, 294, 314, 329, 959, 1240, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 1308
HpyF3I CTNAG 6 cut(s) 29, 583, 908, 1033, 1081, 1226
HpySE526I ACGT 2 cut(s) 893, 1005
Hsp92II CATG 4 cut(s) 218, 1024, 1062, 1361
HspAI GCGC 3 cut(s) 536, 1344, 1367
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
LmnI GCTCC 3 cut(s) 10, 545, 670
Lsp1109I GCAGC 5 cut(s) 37, 216, 306, 433, 584
LweI GCATC 3 cut(s) 191, 652, 1227
MaeII ACGT 2 cut(s) 893, 1005
MaeIII GTNAC 5 cut(s) 189, 281, 550, 819, 1023
MalI GATC 9 cut(s) 77, 83, 205, 425, 921, 1088, 1217, 1319, 1378
MboI GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
MboII GAAGA 8 cut(s) 48, 102, 329, 929, 967, 1183, 1189, 1384
MflI RGATCY 3 cut(s) 203, 919, 1215
MluCI AATT 3 cut(s) 627, 677, 1276
MluI ACGCGT 1 cut(s) 1305
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 1 cut(s) 1099
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 4 cut(s) 267, 323, 402, 1101
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 3 cut(s) 92, 119, 1266
MspR9I CCNGG 4 cut(s) 92, 93, 521, 1067
Mva1269I GAATGC 2 cut(s) 144, 385
MvaI CCWGG 2 cut(s) 521, 1067
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 2 cut(s) 150, 1308
NciI CCSGG 2 cut(s) 92, 93
NdeI CATATG 1 cut(s) 196
NdeII GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
NlaIII CATG 4 cut(s) 218, 1024, 1062, 1361
NlaIV GGNNCC 1 cut(s) 1264
NmuCI GTSAC 3 cut(s) 189, 281, 819
PctI GAATGC 2 cut(s) 144, 385
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 4 cut(s) 36, 466, 1096, 1124
PflMI CCANNNNNTGG 1 cut(s) 935
PkrI GCNGC 6 cut(s) 27, 152, 231, 296, 448, 574
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
Ppu21I YACGTR 1 cut(s) 1006
Psp6I CCWGG 2 cut(s) 519, 1065
PspGI CCWGG 2 cut(s) 519, 1065
PspN4I GGNNCC 1 cut(s) 1264
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 3 cut(s) 203, 919, 1215
RsaI GTAC 2 cut(s) 810, 950
RsaNI GTAC 2 cut(s) 809, 949
SaqAI TTAA 4 cut(s) 267, 323, 402, 1101
SatI GCNGC 6 cut(s) 26, 151, 230, 295, 447, 573
Sau3AI GATC 9 cut(s) 75, 81, 203, 423, 919, 1086, 1215, 1317, 1376
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 4 cut(s) 92, 93, 521, 1067
SfaNI GCATC 3 cut(s) 191, 652, 1227
SinI GGWCC 1 cut(s) 245
SmaI CCCGGG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 401, 872, 1138
SmoI CTYRAG 3 cut(s) 401, 872, 1138
Sse9I AATT 3 cut(s) 627, 677, 1276
SsiI CCGC 3 cut(s) 5, 151, 1258
SspI AATATT 1 cut(s) 1012
StyD4I CCNGG 4 cut(s) 90, 91, 519, 1065
TaaI ACNGT 3 cut(s) 256, 730, 787
TaiI ACGT 2 cut(s) 896, 1008
TaqI TCGA 6 cut(s) 185, 340, 513, 969, 1094, 1393
TasI AATT 3 cut(s) 627, 677, 1276
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 4 cut(s) 36, 466, 1096, 1124
Tru1I TTAA 4 cut(s) 267, 323, 402, 1101
Tru9I TTAA 4 cut(s) 267, 323, 402, 1101
TscAI CASTG 1 cut(s) 858
TseFI GTSAC 3 cut(s) 189, 281, 819
TseI GCWGC 5 cut(s) 25, 229, 294, 446, 572
Tsp45I GTSAC 3 cut(s) 189, 281, 819
TspDTI ATGAA 5 cut(s) 35, 892, 1009, 1063, 1193
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 1 cut(s) 858
Van91I CCANNNNNTGG 1 cut(s) 935
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 1276
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 517
XmaI CCCGGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.