Rh7BG179700

Phosphatidylinositol glycan anchor biosynthesis class U

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009567
Physical Location & Seq
Reverse (-)
14253767 .. 14259080
5314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG179700.1

Sequence Viewer

Length: 1011 bp
ATGATATCAGAAATGGAGATTCTCCCTTCGGGGGATATTGCTGCTTTAATCTACTTGTGGAACCCTTTCACAATAGCTGCATGTGTGGGGTTGTCAACATCTCCAATTGAGAACCTGGCCATCATGTTAGCCCTCTATGGAGCATGTAAACGACTGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACCCATCTGTCTCTTTATCCTATAATTCTTATTATTCCGATTATTCTCTTATTAGGTAATGGTCCAGATACTCCTAGGAAATTGTTCCTGCTGAGGAGACATGGTAAAGTTGAAGAAAACTCCTCGAGTGATAGTTGTCAACAGGAGAAAGTTATTGATCAATCAAAACTACTCGATGTCTTTTCTTGGAGACCTGTCATGTTTTTCTTATTGTGGACTGTTATGTGGTCAGTCTATGTGTTACTTCTATGTGGCGTATCCGTTAAACAGTATGGAGGTCTTTGGGAGATGTTTACAAGTATGTACGGTTTCATTCTCACAGTACAAGATTTGTCTCCAAACATAGGTGTCTTATGGTATTTCTTTGCTGAGGTCTTTGATTTTTTCAGAAATTTTTTCCTGATTGTATTCCATATGAATATTCTCTTTATGATATTCCCATTGGCCATACGGCTGCACCACCGCCCCTGCTTTCTTGCTTTTGTCTACATTACAATCTCTTCAATGCTCAAGTCTTATCCTTCTGTTGGGGATTCAGCTTTGTACTTTGGTTTGTTGGGCTGGTTTGTTTACGAACTGTCAGAAATGAAATTCTCGTTCTTCCTCTTCTGTGTTTATATTGGGGTTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGAACAGGAAACGCAAATTTCTACTTTGCCACTGCAATGGCTTATGCGTGTTTGCAGATTGTTTTGGTGGTTGAAAGTGTAAGTGCAATGCTCAATCACGACAGGAAGTTGAGAAAGCTATCAAGTGCAAAGCTTCAAGATGGCAAATCATAA

Protein Analysis

336

Amino Acids

38.34

Weight (kDa)

8.11

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 10 - 301 2e-83 GPI transamidase subunit PIG-U
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca FvH4_5g01570 FvH4_5g01570
malus_domestica MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica Prupe.5G091900_v2.0.a1
pyrus_communis pycom04g05980 pycom06g07290
rosa_chinensis RchiOBHm_Chr7g0199111
rosa_laevigata RLG00000003814
rosa_multiflora Rmu_sc0006266.1_g000049
rosa_roxburghii Rroxscaffold_3G00257070
rosa_rugosa Rorug07G0052700 Rorug07G0052800
rosa_samantha Rh7BG179700 Rh7DG179200
rosa_wichuraiana Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 675
AciI CCGC 1 cut(s) 652
AcoI YGGCCR 2 cut(s) 117, 633
AcsI RAATTY 3 cut(s) 580, 779, 874
AfaI GTAC 3 cut(s) 494, 513, 734
AfiI CCNNNNNNNGG 3 cut(s) 31, 533, 716
AgsI TTSAA 4 cut(s) 302, 693, 932, 995
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 4 cut(s) 77, 728, 976, 991
AluI AGCT 4 cut(s) 77, 728, 976, 991
Alw26I GTCTC 4 cut(s) 204, 280, 373, 528
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 2 cut(s) 117, 633
ApeKI GCWGC 4 cut(s) 41, 77, 167, 643
ApoI RAATTY 3 cut(s) 580, 779, 874
Asp700I GAANNNNTTC 2 cut(s) 65, 272
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 251
AvrII CCTAGG 1 cut(s) 263
BalI TGGCCA 2 cut(s) 119, 635
BbvCI CCTCAGC 2 cut(s) 281, 558
BbvI GCAGC 4 cut(s) 28, 64, 154, 630
BccI CCATC 4 cut(s) 128, 171, 201, 992
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 4 cut(s) 204, 280, 373, 528
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 4 cut(s) 42, 78, 168, 644
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 4 cut(s) 43, 79, 169, 645
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 62, 159
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 825
Bpu10I CCTNAGC 3 cut(s) 281, 558, 824
BpuEI CTTGAG 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 162, 263
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 533, 716
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 900, 951
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 162, 263
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 31, 533, 716
BseMI GCAATG 2 cut(s) 900, 951
BseMII CTCAG 2 cut(s) 272, 549
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 298, 301
BseXI GCAGC 4 cut(s) 28, 64, 154, 630
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 2 cut(s) 119, 635
BsiHKCI CYCGRG 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 31, 533, 716
BsmAI GTCTC 4 cut(s) 204, 280, 373, 528
BsnI GGCC 2 cut(s) 119, 635
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 313
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 652
BspANI GGCC 2 cut(s) 119, 635
BspCNI CTCAG 2 cut(s) 273, 550
BspLI GGNNCC 2 cut(s) 62, 159
BspTNI GGTCTC 1 cut(s) 373
BsrDI GCAATG 2 cut(s) 900, 951
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 162, 263
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 2 cut(s) 162, 263
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 5 cut(s) 409, 459, 497, 511, 768
Bst6I CTCTTC 2 cut(s) 694, 800
BstDEI CTNAG 3 cut(s) 281, 558, 824
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 4 cut(s) 204, 280, 373, 528
BstMBI GATC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 84, 147
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 4 cut(s) 28, 64, 154, 630
BstXI CCANNNNNNTGG 1 cut(s) 895
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 2 cut(s) 119, 635
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 1 cut(s) 888
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 493, 512, 733
CviAII CATG 6 cut(s) 81, 124, 144, 184, 290, 388
CviQI GTAC 3 cut(s) 493, 512, 733
DdeI CTNAG 3 cut(s) 281, 558, 824
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 2 cut(s) 117, 633
Eam1104I CTCTTC 2 cut(s) 694, 800
EarI CTCTTC 2 cut(s) 694, 800
Eco130I CCWWGG 2 cut(s) 162, 263
Eco31I GGTCTC 1 cut(s) 373
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 162, 263
ErhI CCWWGG 2 cut(s) 162, 263
FaeI CATG 6 cut(s) 84, 127, 147, 187, 293, 391
FatI CATG 6 cut(s) 80, 123, 143, 183, 289, 387
FauNDI CATATG 1 cut(s) 603
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 4 cut(s) 42, 78, 168, 644
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 42, 78, 168, 644
FspBI CTAG 1 cut(s) 264
GluI GCNGC 4 cut(s) 42, 78, 168, 644
HaeIII GGCC 2 cut(s) 119, 635
Hin1II CATG 6 cut(s) 84, 127, 147, 187, 293, 391
HincII GTYRAC 2 cut(s) 96, 329
HindII GTYRAC 2 cut(s) 96, 329
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 2 cut(s) 19, 722
Hpy166II GTNNAC 7 cut(s) 96, 149, 329, 405, 483, 676, 760
Hpy188I TCNGA 4 cut(s) 10, 228, 578, 772
Hpy188III TCNNGA 4 cut(s) 254, 589, 956, 995
Hpy8I GTNNAC 7 cut(s) 96, 149, 329, 405, 483, 676, 760
HpyAV CCTTC 2 cut(s) 36, 720
HpyCH4III ACNGT 5 cut(s) 409, 459, 497, 511, 768
HpyCH4V TGCA 7 cut(s) 80, 646, 838, 893, 913, 944, 986
HpyF3I CTNAG 3 cut(s) 281, 558, 824
Hsp92II CATG 6 cut(s) 84, 127, 147, 187, 293, 391
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 4 cut(s) 28, 64, 154, 630
LweI GCATC 1 cut(s) 825
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 429
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 4 cut(s) 314, 681, 781, 787
MfeI CAATTG 1 cut(s) 105
MlsI TGGCCA 2 cut(s) 119, 635
MluCI AATT 6 cut(s) 105, 213, 269, 580, 779, 874
MluNI TGGCCA 2 cut(s) 119, 635
MnlI CCTC 8 cut(s) 143, 276, 322, 458, 553, 803, 830, 849
Mox20I TGGCCA 2 cut(s) 119, 635
MroXI GAANNNNTTC 2 cut(s) 65, 272
MscI TGGCCA 2 cut(s) 119, 635
MseI TTAA 2 cut(s) 47, 453
MslI CAYNNNNRTG 1 cut(s) 893
Msp20I TGGCCA 2 cut(s) 119, 635
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 603
NdeII GATC 1 cut(s) 346
NlaIII CATG 6 cut(s) 84, 127, 147, 187, 293, 391
NlaIV GGNNCC 2 cut(s) 62, 159
NspI RCATGY 2 cut(s) 84, 147
PaeR7I CTCGAG 1 cut(s) 313
PdmI GAANNNNTTC 2 cut(s) 65, 272
PfeI GAWTC 2 cut(s) 19, 722
PkrI GCNGC 4 cut(s) 43, 79, 169, 645
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 62, 159
PspPI GGNCC 1 cut(s) 251
PspXI VCTCGAGB 1 cut(s) 313
RsaI GTAC 3 cut(s) 494, 513, 734
RsaNI GTAC 3 cut(s) 493, 512, 733
RseI CAYNNNNRTG 1 cut(s) 893
SaqAI TTAA 2 cut(s) 47, 453
SatI GCNGC 4 cut(s) 42, 78, 168, 644
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 116
SfaNI GCATC 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 313
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 2 cut(s) 313, 698
SmoI CTYRAG 2 cut(s) 313, 698
Sse9I AATT 6 cut(s) 105, 213, 269, 580, 779, 874
SsiI CCGC 1 cut(s) 652
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 162, 263
TaaI ACNGT 5 cut(s) 409, 459, 497, 511, 768
TaqI TCGA 2 cut(s) 314, 363
TasI AATT 6 cut(s) 105, 213, 269, 580, 779, 874
TatI WGTACW 2 cut(s) 511, 732
TfiI GAWTC 2 cut(s) 19, 722
Tru1I TTAA 2 cut(s) 47, 453
Tru9I TTAA 2 cut(s) 47, 453
TscAI CASTG 1 cut(s) 895
TseI GCWGC 4 cut(s) 41, 77, 167, 643
TspDTI ATGAA 3 cut(s) 490, 620, 791
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 3 cut(s) 580, 779, 874
XceI RCATGY 2 cut(s) 84, 147
XhoI CTCGAG 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 675
XmnI GAANNNNTTC 2 cut(s) 65, 272
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.