Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Forward (+)

51490977 .. 51496624

Gene Structure 5648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGGAGCAAAGCACGAAGCAGAAGCAGAAGCAGGGAAGGTTCTGGACATGGGTCACAGCTTCAGTGTTATTCAGACTCATTCTCATCTACTTCCCCCAAAATCTCAACCTCTCTTCGCGCCCCGAAGTCTCCACTCCTCTCACCAGCCTTCGTCGCCTGGCCGAAGGATACTGGTTGAAGCAATCATCCATGTCTCCCTACGCAGGATCTATGTACCACGGATCTCCTTTGCTACTCTCGCTTCTTGGCCCACTCACAGTCAAACGAATTGACGGGCAGCCCAATCATCTTCTATGCAGTTTGGTTTTTGTGGCTGCAGATATATTGAATTCATTGCTCATTCGTGCTACTGGTCAGACTCTTCAGATTGCATTTAGGCAGAGTTTGAGATCACTAGATCTTGACATGATATCAGAAATGGTGGCTGATAACTTGGTTATATTTGATGTTTCAGAGATTCTCCCTTCGGGGGATATTGCTGCTTTAATCTACTTGTGGAACCCTTTTACAATAGCTGCATGTGTGGGGTTGTCAACATCTCCAATTGAGAACCTGGCCATCATGTTAGCCCTCTATGGAGCATGTAAACGACTGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACCCATCTGTCTCTTTATCCTATAATTCTTATTATTCCGGTAAGTAATGGTCCAGATACTCCTAGGAGATTGTTCCTGCTGAGGAGACATGGTAAAGTTGAAGAAAACTCCTCGAGTGATAGTTGTCAACAGGAGAAAGTTATTGATCAATCAAAACTACTCGATGTCTTTTCTTGGAGACCTGTCATGCTTTTCTTAGTGTGGACTGTTATGTGGTCAGTCTATGTGTTACTTCTATGTGGCATATCCGTTAAACAGTATGGAGGTCTTTGGGAGATGTTTACAAGGTATTTCTTTGCCGAGGTTGGGGATTCAGCTCTGTACTTTGGTTTGTTGGGCTGGTTTGTTTACGAACTGTCAGAAATGAAATTCTCGTTCTTCCTCTTCTGTGTTTATATTGGGGTTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGAACAGGAAACGCAAATTTCTACTTTGCCACTGCAATGGCTTATGCGTGTTTGCAGATTGTTTTGGTGGTTGAAAGTGTAAGTGCAATGCTCAATCACGACAGGAAGTTGAGAAAGCTATCAAGTGCAAAGCTTCAACATGGCAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

409

Amino Acids

46.19

Weight (kDa)

8.87

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	21 - 307	8.2e-51	GPI transamidase subunit PIG-U
PIG-U	PF06728	312 - 374	5.3e-16	GPI transamidase subunit PIG-U

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AclWI	GGATC	2 cut(s)	217, 232
AcoI	YGGCCR	2 cut(s)	162, 558
AcsI	RAATTY	3 cut(s)	331, 998, 1093
AcuI	CTGAAG	2 cut(s)	48, 350
AfaI	GTAC	2 cut(s)	218, 953
AfiI	CCNNNNNNNGG	3 cut(s)	206, 472, 936
AgsI	TTSAA	5 cut(s)	181, 331, 731, 1151, 1214
AjnI	CCWGG	2 cut(s)	159, 555
AluBI	AGCT	5 cut(s)	62, 518, 947, 1195, 1210
AluI	AGCT	5 cut(s)	62, 518, 947, 1195, 1210
Alw26I	GTCTC	5 cut(s)	136, 201, 645, 709, 802
AlwI	GGATC	2 cut(s)	217, 232
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	3 cut(s)	162, 250, 558
ApeKI	GCWGC	5 cut(s)	280, 317, 482, 518, 608
ApoI	RAATTY	3 cut(s)	331, 998, 1093
AspA2I	CCTAGG	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	251, 680
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	680
AvrII	CCTAGG	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	292, 304, 469, 505, 595
BccI	CCATC	3 cut(s)	569, 612, 642
BciT130I	CCWGG	2 cut(s)	161, 557
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	5 cut(s)	136, 201, 645, 709, 802
BfaI	CTAG	2 cut(s)	398, 693
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	5 cut(s)	281, 318, 483, 519, 609
BlnI	CCTAGG	1 cut(s)	692
BlsI	GCNGC	5 cut(s)	282, 319, 484, 520, 610
Bme1390I	CCNGG	2 cut(s)	161, 557
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	2 cut(s)	251, 680
BmiI	GGNNCC	2 cut(s)	503, 600
BmrFI	CCNGG	2 cut(s)	161, 557
BmsI	GCATC	1 cut(s)	1044
BoxI	GACNNNNGTC	1 cut(s)	53
Bpu10I	CCTNAGC	2 cut(s)	710, 1043
BsaI	GGTCTC	1 cut(s)	802
BsaJI	CCNNGG	4 cut(s)	220, 603, 692, 930
BsaWI	WCCGGW	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 472, 936
Bse1I	ACTGG	3 cut(s)	179, 358, 600
Bse3DI	GCAATG	3 cut(s)	335, 1119, 1170
BseBI	CCWGG	2 cut(s)	161, 557
BseDI	CCNNGG	4 cut(s)	220, 603, 692, 930
BseGI	GGATG	2 cut(s)	188, 623
BseLI	CCNNNNNNNGG	3 cut(s)	206, 472, 936
BseMI	GCAATG	3 cut(s)	335, 1119, 1170
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	3 cut(s)	179, 358, 600
BseRI	GAGGAG	4 cut(s)	20, 129, 727, 730
BseXI	GCAGC	5 cut(s)	292, 304, 469, 505, 595
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	164, 252, 560
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	3 cut(s)	206, 472, 936
BsmAI	GTCTC	5 cut(s)	136, 201, 645, 709, 802
BsnI	GGCC	3 cut(s)	164, 252, 560
Bso31I	GGTCTC	1 cut(s)	802
BsoBI	CYCGRG	1 cut(s)	742
Bsp143I	GATC	5 cut(s)	209, 224, 392, 400, 775
BspANI	GGCC	3 cut(s)	164, 252, 560
BspCNI	CTCAG	1 cut(s)	702
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	503, 600
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	217, 232
BspTNI	GGTCTC	1 cut(s)	802
BsrDI	GCAATG	3 cut(s)	335, 1119, 1170
BsrI	ACTGG	3 cut(s)	179, 358, 600
BssECI	CCNNGG	4 cut(s)	220, 603, 692, 930
BssMI	GATC	5 cut(s)	209, 224, 392, 400, 775
BssT1I	CCWWGG	2 cut(s)	603, 692
Bst2UI	CCWGG	2 cut(s)	161, 557
Bst4CI	ACNGT	4 cut(s)	262, 838, 888, 987
Bst6I	CTCTTC	3 cut(s)	121, 369, 1019
BstDEI	CTNAG	3 cut(s)	710, 826, 1043
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	188, 623
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	212, 227, 395, 403, 778
BstMAI	GTCTC	5 cut(s)	136, 201, 645, 709, 802
BstMBI	GATC	5 cut(s)	209, 224, 392, 400, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 241
BstNI	CCWGG	2 cut(s)	161, 557
BstNSI	RCATGY	2 cut(s)	525, 588
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	159, 555
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	5 cut(s)	292, 304, 469, 505, 595
BstX2I	RGATCY	3 cut(s)	209, 224, 400
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BstYI	RGATCY	3 cut(s)	209, 224, 400
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	164, 252, 560
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	188, 623
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	2 cut(s)	72, 1107
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	251, 680
Csp6I	GTAC	2 cut(s)	217, 952
CviQI	GTAC	2 cut(s)	217, 952
DdeI	CTNAG	3 cut(s)	710, 826, 1043
DpnI	GATC	5 cut(s)	211, 226, 394, 402, 777
DpnII	GATC	5 cut(s)	209, 224, 392, 400, 775
EaeI	YGGCCR	2 cut(s)	162, 558
Eam1104I	CTCTTC	3 cut(s)	121, 369, 1019
EarI	CTCTTC	3 cut(s)	121, 369, 1019
Eco130I	CCWWGG	2 cut(s)	603, 692
Eco31I	GGTCTC	1 cut(s)	802
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	2 cut(s)	48, 350
Eco88I	CYCGRG	1 cut(s)	742
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	159, 555
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	603, 692
ErhI	CCWWGG	2 cut(s)	603, 692
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	5 cut(s)	281, 318, 483, 519, 609
FokI	GGATG	2 cut(s)	175, 630
Fsp4HI	GCNGC	5 cut(s)	281, 318, 483, 519, 609
FspBI	CTAG	2 cut(s)	398, 693
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	281, 318, 483, 519, 609
HaeIII	GGCC	3 cut(s)	164, 252, 560
HapII	CCGG	1 cut(s)	668
HhaI	GCGC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	537, 758
HindII	GTYRAC	2 cut(s)	537, 758
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	4 cut(s)	78, 361, 460, 941
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	6 cut(s)	537, 590, 758, 834, 912, 979
Hpy188I	TCNGA	6 cut(s)	77, 360, 369, 418, 457, 991
Hpy188III	TCNNGA	4 cut(s)	46, 404, 683, 1175
Hpy8I	GTNNAC	6 cut(s)	537, 590, 758, 834, 912, 979
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	4 cut(s)	33, 161, 161, 477
HpyCH4III	ACNGT	4 cut(s)	262, 838, 888, 987
HpyCH4V	TGCA	9 cut(s)	300, 320, 374, 521, 1057, 1112, 1132, 1163, 1205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 241
HpyF3I	CTNAG	3 cut(s)	710, 826, 1043
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	209, 224, 392, 400, 775
LmnI	GCTCC	2 cut(s)	7, 581
Lsp1109I	GCAGC	5 cut(s)	292, 304, 469, 505, 595
LweI	GCATC	1 cut(s)	1044
MaeI	CTAG	2 cut(s)	398, 693
MaeIII	GTNAC	2 cut(s)	55, 858
MalI	GATC	5 cut(s)	211, 226, 394, 402, 777
MboI	GATC	5 cut(s)	209, 224, 392, 400, 775
MboII	GAAGA	6 cut(s)	108, 284, 356, 743, 1000, 1006
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	3 cut(s)	209, 224, 400
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	6 cut(s)	270, 331, 546, 654, 998, 1093
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	72, 355
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	488, 882
MslI	CAYNNNNRTG	1 cut(s)	1112
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	161, 557
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	161, 557
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	156, 241
NdeII	GATC	5 cut(s)	209, 224, 392, 400, 775
NlaIV	GGNNCC	2 cut(s)	503, 600
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	525, 588
PaeR7I	CTCGAG	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	460, 941
PkrI	GCNGC	5 cut(s)	282, 319, 484, 520, 610
PleI	GAGTC	2 cut(s)	72, 355
PpsI	GAGTC	2 cut(s)	72, 355
PshAI	GACNNNNGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	159, 555
PspGI	CCWGG	2 cut(s)	159, 555
PspN4I	GGNNCC	2 cut(s)	503, 600
PspPI	GGNCC	2 cut(s)	251, 680
PspXI	VCTCGAGB	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	209, 224, 400
RsaI	GTAC	2 cut(s)	218, 953
RsaNI	GTAC	2 cut(s)	217, 952
RseI	CAYNNNNRTG	1 cut(s)	1112
SaqAI	TTAA	2 cut(s)	488, 882
SatI	GCNGC	5 cut(s)	281, 318, 483, 519, 609
Sau3AI	GATC	5 cut(s)	209, 224, 392, 400, 775
Sau96I	GGNCC	2 cut(s)	251, 680
SchI	GAGTC	2 cut(s)	72, 355
ScrFI	CCNGG	2 cut(s)	161, 557
SfaNI	GCATC	1 cut(s)	1044
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	742
SinI	GGWCC	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	1112
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
Sse9I	AATT	6 cut(s)	270, 331, 546, 654, 998, 1093
SspMI	CTAG	2 cut(s)	398, 693
StyD4I	CCNGG	2 cut(s)	159, 555
StyI	CCWWGG	2 cut(s)	603, 692
TaaI	ACNGT	4 cut(s)	262, 838, 888, 987
TaqI	TCGA	2 cut(s)	743, 792
TasI	AATT	6 cut(s)	270, 331, 546, 654, 998, 1093
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	2 cut(s)	460, 941
Tru1I	TTAA	2 cut(s)	488, 882
Tru9I	TTAA	2 cut(s)	488, 882
TscAI	CASTG	2 cut(s)	72, 1114
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	280, 317, 482, 518, 608
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	324, 1010
TspGWI	ACGGA	2 cut(s)	237, 868
TspRI	CASTG	2 cut(s)	72, 1114
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	3 cut(s)	331, 998, 1093
XceI	RCATGY	2 cut(s)	525, 588
XhoI	CTCGAG	1 cut(s)	742
XmaJI	CCTAGG	1 cut(s)	692
XspI	CTAG	2 cut(s)	398, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.