Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Reverse (-)

191981 .. 196848

Gene Structure 4868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggaggagcaaagcacgaagaggacgaagcagaagcagggaagattctggacatgggtcacagcttcagtattattcagactcatcctcatctacttcccccaaaatctcaacctctcttcgcgccccgaagtctccactcctctcaccagccttcgtcgcctggccgaaggatactggttgaagcaatcatccatgtctccctacgcaggatctatgtatcacggatctcctttgctactctcacttcttggcccactcacagtcaaacgaattgacgagcagcccagtcatcttctatgcagtttggtttttgtggctgcagatatattgaattcattgctcattcgtgctactggtcagactcttcagattgcatataggcagagtttgagatcactagatcttgacatgatatcggaaatggagattctctctccgggggatattgctgctttaatctacttgtggaacccttttacaatagctgcatgtgtggggttgtcaacatctccaattgagaacctggccatcatgttagccctctatggagcatgtaaacgactggttcccttggctgcttttggatgggtcatggcaacccatctgtctctttatcctataattcttattattccgattattctcttattaggtaatggtccagatactcctaggaaattgttcctgctgaggagacatggtaaagttgaagaaaactcctcgagtgatagttgtcaacaggagaaagttattgatcaatcaaaactactcgatgtcttttcttggaggcctgtcatgcttttcttagtgtggactgttatgtggtcagtctatgtgttacttctatgtggcgtatcggttaaacagtatggaggtctttgggagatgtttacaagtatgtacggtttcattctcacagttcaagatttgtctccaaacataggtgtcttatggtatttctttgccgaggtctttgattttttcagaaattttttcctgattgtattccatatgaatattctctttatgatattcccattggccatacggctgcaccaccgcccctgctttcttgcttttgtctacattacaatctcttcaatgctcaagtcttatccttctgttggggattcagcactgtactttggtttgttgggctggtttgtttacgaactgtcagaaatgaaattctcgttcttcctcttctgtgtttatattggggtttccctccttagccctgtgatgcacaacctatggatatggaggggaacaggaaacgcaaatttctactttgccactgcaatggcttatgcgtgtttgcagattgttttggtggttgaaagtgtgagtgcaatgctcaatcacgacaggaagttgagaaagctatcaagtgcaaagcttcaagatggcaaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

473

Amino Acids

53.84

Weight (kDa)

8.98

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1086
AccII	CGCG	1 cut(s)	124
AciI	CCGC	1 cut(s)	1063
AclWI	GGATC	2 cut(s)	220, 235
AcoI	YGGCCR	3 cut(s)	165, 528, 1044
AcsI	RAATTY	4 cut(s)	334, 991, 1190, 1285
AcuI	CTGAAG	2 cut(s)	51, 353
AfaI	GTAC	2 cut(s)	905, 1145
AfiI	CCNNNNNNNGG	3 cut(s)	209, 944, 1127
AgsI	TTSAA	7 cut(s)	184, 334, 713, 926, 1104, 1343, 1406
AjnI	CCWGG	2 cut(s)	162, 525
AluBI	AGCT	4 cut(s)	65, 488, 1387, 1402
AluI	AGCT	4 cut(s)	65, 488, 1387, 1402
Alw26I	GTCTC	5 cut(s)	139, 204, 615, 691, 939
AlwI	GGATC	2 cut(s)	220, 235
Ama87I	CYCGRG	1 cut(s)	724
AoxI	GGCC	5 cut(s)	165, 253, 528, 791, 1044
ApeKI	GCWGC	6 cut(s)	283, 320, 452, 488, 578, 1054
ApoI	RAATTY	4 cut(s)	334, 991, 1190, 1285
Asp700I	GAANNNNTTC	1 cut(s)	683
AspA2I	CCTAGG	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	254, 662
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	674
BalI	TGGCCA	2 cut(s)	530, 1046
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	6 cut(s)	295, 307, 439, 475, 565, 1041
BccI	CCATC	4 cut(s)	539, 582, 612, 1403
BceAI	ACGGC	1 cut(s)	1067
BciT130I	CCWGG	2 cut(s)	164, 527
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	5 cut(s)	139, 204, 615, 691, 939
BfaI	CTAG	2 cut(s)	401, 675
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	6 cut(s)	284, 321, 453, 489, 579, 1055
BlnI	CCTAGG	1 cut(s)	674
BlsI	GCNGC	6 cut(s)	285, 322, 454, 490, 580, 1056
Bme1390I	CCNGG	3 cut(s)	164, 441, 527
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	254, 662
BmiI	GGNNCC	2 cut(s)	473, 570
BmrFI	CCNGG	3 cut(s)	164, 441, 527
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	282
BoxI	GACNNNNGTC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bpu10I	CCTNAGC	2 cut(s)	692, 1235
BpuEI	CTTGAG	1 cut(s)	1094
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	440, 573, 674, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 944, 1127
Bse1I	ACTGG	4 cut(s)	182, 288, 361, 570
Bse3DI	GCAATG	3 cut(s)	338, 1311, 1362
BseBI	CCWGG	2 cut(s)	164, 527
BseDI	CCNNGG	4 cut(s)	440, 573, 674, 969
BseGI	GGATG	3 cut(s)	84, 191, 593
BseLI	CCNNNNNNNGG	3 cut(s)	209, 944, 1127
BseMI	GCAATG	3 cut(s)	338, 1311, 1362
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	4 cut(s)	182, 288, 361, 570
BseRI	GAGGAG	4 cut(s)	20, 132, 709, 712
BseXI	GCAGC	6 cut(s)	295, 307, 439, 475, 565, 1041
BsgI	GTGCAG	1 cut(s)	1040
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	167, 255, 530, 793, 1046
BsiHKCI	CYCGRG	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	209, 944, 1127
BsmAI	GTCTC	5 cut(s)	139, 204, 615, 691, 939
BsnI	GGCC	5 cut(s)	167, 255, 530, 793, 1046
BsoBI	CYCGRG	1 cut(s)	724
Bsp143I	GATC	5 cut(s)	212, 227, 395, 403, 757
BspACI	CCGC	1 cut(s)	1063
BspANI	GGCC	5 cut(s)	167, 255, 530, 793, 1046
BspCNI	CTCAG	1 cut(s)	684
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	473, 570
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	220, 235
BsrDI	GCAATG	3 cut(s)	338, 1311, 1362
BsrI	ACTGG	4 cut(s)	182, 288, 361, 570
BssECI	CCNNGG	4 cut(s)	440, 573, 674, 969
BssMI	GATC	5 cut(s)	212, 227, 395, 403, 757
BssT1I	CCWWGG	2 cut(s)	573, 674
Bst2UI	CCWGG	2 cut(s)	164, 527
Bst4CI	ACNGT	7 cut(s)	265, 820, 870, 908, 922, 1143, 1179
Bst6I	CTCTTC	5 cut(s)	14, 124, 372, 1105, 1211
BstDEI	CTNAG	3 cut(s)	692, 808, 1235
BstF5I	GGATG	3 cut(s)	84, 191, 593
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	5 cut(s)	215, 230, 398, 406, 760
BstMAI	GTCTC	5 cut(s)	139, 204, 615, 691, 939
BstMBI	GATC	5 cut(s)	212, 227, 395, 403, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 799
BstNI	CCWGG	2 cut(s)	164, 527
BstNSI	RCATGY	2 cut(s)	495, 558
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	3 cut(s)	162, 439, 525
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	6 cut(s)	295, 307, 439, 475, 565, 1041
BstX2I	RGATCY	3 cut(s)	212, 227, 403
BstXI	CCANNNNNNTGG	1 cut(s)	1306
BstYI	RGATCY	3 cut(s)	212, 227, 403
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	5 cut(s)	167, 255, 530, 793, 1046
BtsCI	GGATG	3 cut(s)	84, 191, 593
BtsI	GCAGTG	1 cut(s)	1299
BtsIMutI	CAGTG	2 cut(s)	1139, 1299
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	254, 662
Csp6I	GTAC	2 cut(s)	904, 1144
CviAII	CATG	9 cut(s)	54, 196, 412, 492, 535, 555, 595, 701, 799
CviQI	GTAC	2 cut(s)	904, 1144
DdeI	CTNAG	3 cut(s)	692, 808, 1235
DpnI	GATC	5 cut(s)	214, 229, 397, 405, 759
DpnII	GATC	5 cut(s)	212, 227, 395, 403, 757
EaeI	YGGCCR	3 cut(s)	165, 528, 1044
Eam1104I	CTCTTC	5 cut(s)	14, 124, 372, 1105, 1211
EarI	CTCTTC	5 cut(s)	14, 124, 372, 1105, 1211
Eco130I	CCWWGG	2 cut(s)	573, 674
Eco147I	AGGCCT	1 cut(s)	793
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	51, 353
Eco88I	CYCGRG	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	162, 525
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	573, 674
ErhI	CCWWGG	2 cut(s)	573, 674
FaeI	CATG	9 cut(s)	57, 199, 415, 495, 538, 558, 598, 704, 802
FatI	CATG	9 cut(s)	53, 195, 411, 491, 534, 554, 594, 700, 798
FauNDI	CATATG	1 cut(s)	1014
FbaI	TGATCA	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	6 cut(s)	284, 321, 453, 489, 579, 1055
FokI	GGATG	3 cut(s)	71, 178, 600
Fsp4HI	GCNGC	6 cut(s)	284, 321, 453, 489, 579, 1055
FspBI	CTAG	2 cut(s)	401, 675
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	6 cut(s)	284, 321, 453, 489, 579, 1055
HaeIII	GGCC	5 cut(s)	167, 255, 530, 793, 1046
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	9 cut(s)	57, 199, 415, 495, 538, 558, 598, 704, 802
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	2 cut(s)	507, 740
HindII	GTYRAC	2 cut(s)	507, 740
HindIII	AAGCTT	1 cut(s)	1400
HinfI	GANTC	5 cut(s)	45, 81, 364, 430, 1133
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	7 cut(s)	507, 560, 740, 816, 894, 1087, 1171
Hpy188I	TCNGA	7 cut(s)	80, 363, 372, 421, 639, 989, 1183
Hpy188III	TCNNGA	7 cut(s)	49, 407, 665, 926, 1000, 1367, 1406
Hpy8I	GTNNAC	7 cut(s)	507, 560, 740, 816, 894, 1087, 1171
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	164, 164, 1131
HpyCH4III	ACNGT	7 cut(s)	265, 820, 870, 908, 922, 1143, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 799
HpyF3I	CTNAG	3 cut(s)	692, 808, 1235
Hsp92II	CATG	9 cut(s)	57, 199, 415, 495, 538, 558, 598, 704, 802
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	212, 227, 395, 403, 757
LmnI	GCTCC	2 cut(s)	7, 551
Lsp1109I	GCAGC	6 cut(s)	295, 307, 439, 475, 565, 1041
LweI	GCATC	1 cut(s)	1236
MaeI	CTAG	2 cut(s)	401, 675
MaeIII	GTNAC	2 cut(s)	58, 840
MalI	GATC	5 cut(s)	214, 229, 397, 405, 759
MboI	GATC	5 cut(s)	212, 227, 395, 403, 757
MboII	GAAGA	9 cut(s)	31, 54, 111, 287, 359, 725, 1092, 1192, 1198
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	3 cut(s)	212, 227, 403
MlsI	TGGCCA	2 cut(s)	530, 1046
MluCI	AATT	8 cut(s)	273, 334, 516, 624, 680, 991, 1190, 1285
MluNI	TGGCCA	2 cut(s)	530, 1046
MlyI	GAGTC	2 cut(s)	75, 358
Mox20I	TGGCCA	2 cut(s)	530, 1046
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	2 cut(s)	530, 1046
MseI	TTAA	2 cut(s)	458, 864
MslI	CAYNNNNRTG	1 cut(s)	1304
Msp20I	TGGCCA	2 cut(s)	530, 1046
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	3 cut(s)	164, 441, 527
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	164, 527
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	159, 799
NciI	CCSGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	1014
NdeII	GATC	5 cut(s)	212, 227, 395, 403, 757
NlaIII	CATG	9 cut(s)	57, 199, 415, 495, 538, 558, 598, 704, 802
NlaIV	GGNNCC	2 cut(s)	473, 570
NmeAIII	GCCGAG	1 cut(s)	994
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	2 cut(s)	495, 558
PaeR7I	CTCGAG	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	45, 430, 1133
PkrI	GCNGC	6 cut(s)	285, 322, 454, 490, 580, 1056
PleI	GAGTC	2 cut(s)	75, 358
PpsI	GAGTC	2 cut(s)	75, 358
PshAI	GACNNNNGTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	162, 525
PspGI	CCWGG	2 cut(s)	162, 525
PspN4I	GGNNCC	2 cut(s)	473, 570
PspPI	GGNCC	2 cut(s)	254, 662
PspXI	VCTCGAGB	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	3 cut(s)	212, 227, 403
RsaI	GTAC	2 cut(s)	905, 1145
RsaNI	GTAC	2 cut(s)	904, 1144
RseI	CAYNNNNRTG	1 cut(s)	1304
SaqAI	TTAA	2 cut(s)	458, 864
SatI	GCNGC	6 cut(s)	284, 321, 453, 489, 579, 1055
Sau3AI	GATC	5 cut(s)	212, 227, 395, 403, 757
Sau96I	GGNCC	2 cut(s)	254, 662
SchI	GAGTC	2 cut(s)	75, 358
ScrFI	CCNGG	3 cut(s)	164, 441, 527
SfaNI	GCATC	1 cut(s)	1236
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	1304
SmlI	CTYRAG	2 cut(s)	724, 1109
SmoI	CTYRAG	2 cut(s)	724, 1109
Sse9I	AATT	8 cut(s)	273, 334, 516, 624, 680, 991, 1190, 1285
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	1 cut(s)	1063
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	2 cut(s)	401, 675
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	162, 439, 525
StyI	CCWWGG	2 cut(s)	573, 674
TaaI	ACNGT	7 cut(s)	265, 820, 870, 908, 922, 1143, 1179
TaqI	TCGA	2 cut(s)	725, 774
TasI	AATT	8 cut(s)	273, 334, 516, 624, 680, 991, 1190, 1285
TatI	WGTACW	1 cut(s)	1143
TfiI	GAWTC	3 cut(s)	45, 430, 1133
Tru1I	TTAA	2 cut(s)	458, 864
Tru9I	TTAA	2 cut(s)	458, 864
TscAI	CASTG	2 cut(s)	1146, 1306
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	6 cut(s)	283, 320, 452, 488, 578, 1054
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	327, 901, 1031, 1202
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	1146, 1306
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	4 cut(s)	334, 991, 1190, 1285
XceI	RCATGY	2 cut(s)	495, 558
XhoI	CTCGAG	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	1086
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	2 cut(s)	401, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.