Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Forward (+)

11871530 .. 11876993

Gene Structure 5464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07290.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAGGCGAAGACGGAGGAGCAGAGCACGAAGAGGAAGAAGCAGAAGCACGGAAGCTTCTGGACATGGCTGGCGGCGTCGGTTTTATTCAGGCTCGTCCTCATCTACTTCCCCAAAAATCTCAACCTCTCCTCCCGCCCCGAAGTCTCCACTCCTCTCACCAGCCTCCGCCGCCTGGCTGAGGGTTACTGGTTGAAGCAATCGTCAATGTCTCCATATGCAGGATCTATGTACCATGGATCTCCTTTGTTACTCTCACTTCTCGGGCCACTCACCGTCAAACGAATTGAAGGGCAACCCAATCATCTTCTCTGTAGTTTGGTTTTTGTGGTTGCAGATATATTGAATGCCATGCTTATTCGTGCTACTGGTCAGACTCTTCAGGTTGCATACCGGCAGAGTTTGAAGTCACTAGATCTTGATACGATATCAGAAAGCAGTGAGGTCCTCCCTTCTGGAGATATTGCTGCTCTTGTGTACCTATGGAATCCTTTGACAATAGTTGCATGTGTGGGTTTGTCAACATCTCCAATTGAAAATTTTGCCATCATACTGGCCCTGTTTGGAGCATGCAAAAGACTGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACACATCTGTCTCTTTATCCTATGATTCTCATAATTCCAATGATTCTTTTATTAGGATATGGTCCAGATACTCCGAGGAAACTGTTGCTGCAGAGGAGATATGGTAAAGCTGAAGATGACACGTCAATTGATAGTTGTCAACAACAGGAGAAAGTTATTAATCAATCAGAGCTGCCCCATGTTTTCTCTTGGAGACCTGTCATGCTTTTCTTATTGTGGGCTATTGTGTGGTCAGCCTATGTGTTATTTCTCTGTGGCGTATCTGCTAAACAGTATGGTAGTCTCTGGGAGATGTTTGAAAGAATGCATGGTTTCATTCTCACTGTGCAAGATTTGTCTCCAAATATAGGTGTCTTATGGTATTTCTTTGCAGAGGTCTTCAATTTTTTCAGAAGTTTCTTCCTCATCGTTTTCCATATGAATATTCTCTTTATGATATTTCCATTGGCTATACGGCTGAAGCATCGTCCATGCTTTCTTGCTTTTGTCTACATCACCATCTCCTCAATGCTTAAATCTTATCCTTCTGTTGGGGATTCAGCTCTGTACATTGGTTTGTTGGGCTGGTTTGTTAATGAACTGTCAGAAATGCGATTCTCGTTCTGCCTCTTCAGCATTTATGTTGGCATTTCCCTCCTTAGCCCTGTTATGCACAACCTATGGATATGGAGGGGCACTGGCAATGCAAATTTCTACTTCGCTACTGCAATTACTTATGCTTGTTTGCAGATTGTTTTGGTGATTGAGAGTGTAAGTGCAATGCTCAATCATGACAGGAAGCTAAGAAAGCTATCGAACACAAAGATTCATGTTGACAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

480

Amino Acids

54.41

Weight (kDa)

9.19

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1104
AciI	CCGC	4 cut(s)	74, 136, 169, 172
AclWI	GGATC	2 cut(s)	232, 247
AcsI	RAATTY	2 cut(s)	538, 1303
AcuI	CTGAAG	4 cut(s)	365, 747, 1094, 1210
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	3 cut(s)	233, 479, 1163
AfiI	CCNNNNNNNGG	5 cut(s)	175, 181, 221, 962, 1145
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	7 cut(s)	196, 290, 346, 406, 536, 914, 997
AjiI	CACGTC	1 cut(s)	738
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	6 cut(s)	57, 725, 787, 1157, 1396, 1405
AluI	AGCT	6 cut(s)	57, 725, 787, 1157, 1396, 1405
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	6 cut(s)	151, 216, 630, 802, 902, 957
AlwI	GGATC	2 cut(s)	232, 247
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	266, 555
ApeKI	GCWGC	4 cut(s)	467, 593, 703, 787
ApoI	RAATTY	2 cut(s)	538, 1303
AseI	ATTAAT	1 cut(s)	774
AspS9I	GGNCC	4 cut(s)	266, 445, 556, 677
AsuHPI	GGTGA	4 cut(s)	151, 265, 1102, 1366
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	445, 677
BaeGI	GKGCMC	1 cut(s)	1292
BbsI	GAAGAC	2 cut(s)	17, 985
Bbv12I	GWGCWC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	454, 580, 690, 774
BccI	CCATC	3 cut(s)	554, 597, 1121
BceAI	ACGGC	1 cut(s)	1085
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	6 cut(s)	151, 216, 630, 802, 902, 957
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	313, 704
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	6 cut(s)	75, 172, 468, 594, 704, 788
BlsI	GCNGC	6 cut(s)	76, 173, 469, 595, 705, 789
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	445, 677
BmeT110I	CYCGRG	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	738
BmgT120I	GGNCC	4 cut(s)	266, 445, 556, 677
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	1087
BpiI	GAAGAC	2 cut(s)	17, 985
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	2 cut(s)	180, 1253
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	802
BsaJI	CCNNGG	3 cut(s)	235, 588, 689
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 703, 733
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 181, 221, 962, 1145
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	5 cut(s)	194, 373, 558, 585, 1297
Bse3DI	GCAATG	2 cut(s)	1303, 1380
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	235, 588, 689
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	5 cut(s)	175, 181, 221, 962, 1145
BseMI	GCAATG	2 cut(s)	1303, 1380
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	5 cut(s)	194, 373, 558, 585, 1297
BseRI	GAGGAG	5 cut(s)	32, 121, 144, 724, 1108
BseSI	GKGCMC	1 cut(s)	1292
BseXI	GCAGC	4 cut(s)	454, 580, 690, 774
BshFI	GGCC	2 cut(s)	268, 557
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	5 cut(s)	175, 181, 221, 962, 1145
BsmAI	GTCTC	6 cut(s)	151, 216, 630, 802, 902, 957
BsmI	GAATGC	2 cut(s)	352, 924
BsnI	GGCC	2 cut(s)	268, 557
Bso31I	GGTCTC	1 cut(s)	802
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	29, 1292
Bsp1407I	TGTACA	1 cut(s)	1161
Bsp143I	GATC	3 cut(s)	224, 239, 415
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	4 cut(s)	74, 136, 169, 172
BspANI	GGCC	2 cut(s)	268, 557
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	1384
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	1 cut(s)	708
BspPI	GGATC	2 cut(s)	232, 247
BspTNI	GGTCTC	1 cut(s)	802
BsrDI	GCAATG	2 cut(s)	1303, 1380
BsrFI	RCCGGY	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	1161
BsrI	ACTGG	5 cut(s)	194, 373, 558, 585, 1297
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	235, 588, 689
BssMI	GATC	3 cut(s)	224, 239, 415
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	235, 588
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	5 cut(s)	277, 699, 888, 940, 1197
Bst6I	CTCTTC	3 cut(s)	26, 384, 1229
BstACI	GRCGYC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	1161
BstC8I	GCNNGC	2 cut(s)	72, 571
BstDEI	CTNAG	3 cut(s)	180, 1253, 1397
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	227, 242, 418
BstMAI	GTCTC	6 cut(s)	151, 216, 630, 802, 902, 957
BstMBI	GATC	3 cut(s)	224, 239, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 1227, 1402
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	510, 573
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	313, 704
BstSLI	GKGCMC	1 cut(s)	1292
BstV1I	GCAGC	4 cut(s)	454, 580, 690, 774
BstV2I	GAAGAC	2 cut(s)	17, 985
BstX2I	RGATCY	3 cut(s)	224, 239, 415
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	3 cut(s)	224, 239, 415
BsuRI	GGCC	2 cut(s)	268, 557
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	608
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	445, 936, 1290
Cac8I	GCNNGC	2 cut(s)	72, 571
CciI	TCATGA	1 cut(s)	1384
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	4 cut(s)	266, 445, 556, 677
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	232, 478, 1162
CviQI	GTAC	3 cut(s)	232, 478, 1162
DdeI	CTNAG	3 cut(s)	180, 1253, 1397
DpnI	GATC	3 cut(s)	226, 241, 417
DpnII	GATC	3 cut(s)	224, 239, 415
Eam1104I	CTCTTC	3 cut(s)	26, 384, 1229
EarI	CTCTTC	3 cut(s)	26, 384, 1229
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	235, 588
Eco31I	GGTCTC	1 cut(s)	802
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	445, 677
Eco57I	CTGAAG	4 cut(s)	365, 747, 1094, 1210
Eco88I	CYCGRG	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	235, 588
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	2 cut(s)	235, 588
FauI	CCCGC	1 cut(s)	143
FauNDI	CATATG	2 cut(s)	217, 1032
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	6 cut(s)	75, 172, 468, 594, 704, 788
FokI	GGATG	1 cut(s)	615
Fsp4HI	GCNGC	6 cut(s)	75, 172, 468, 594, 704, 788
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	6 cut(s)	75, 172, 468, 594, 704, 788
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	268, 557
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	77
HincII	GTYRAC	3 cut(s)	522, 755, 1429
HindII	GTYRAC	3 cut(s)	522, 755, 1429
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	7 cut(s)	376, 487, 640, 658, 1151, 1209, 1420
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	4 cut(s)	151, 265, 1102, 1366
Hpy166II	GTNNAC	5 cut(s)	478, 522, 755, 1105, 1429
Hpy188I	TCNGA	6 cut(s)	375, 433, 690, 784, 1007, 1201
Hpy188III	TCNNGA	5 cut(s)	61, 419, 456, 680, 1385
Hpy8I	GTNNAC	5 cut(s)	478, 522, 755, 1105, 1429
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	284, 462, 1149
HpyCH4III	ACNGT	5 cut(s)	277, 699, 888, 940, 1197
HpyCH4IV	ACGT	1 cut(s)	737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 1227, 1402
HpyF3I	CTNAG	3 cut(s)	180, 1253, 1397
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	224, 239, 415
LmnI	GCTCC	2 cut(s)	19, 566
Lsp1109I	GCAGC	4 cut(s)	454, 580, 690, 774
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	3 cut(s)	185, 249, 408
MalI	GATC	3 cut(s)	226, 241, 417
MboI	GATC	3 cut(s)	224, 239, 415
MboII	GAAGA	9 cut(s)	22, 43, 49, 299, 371, 740, 985, 1006, 1216
MfeI	CAATTG	2 cut(s)	531, 741
MflI	RGATCY	3 cut(s)	224, 239, 415
MhlI	GDGCHC	2 cut(s)	29, 1292
MluCI	AATT	8 cut(s)	285, 531, 538, 648, 741, 997, 1303, 1323
MlyI	GAGTC	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	924
MseI	TTAA	4 cut(s)	774, 1128, 1188, 1438
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	2 cut(s)	531, 741
Mva1269I	GAATGC	2 cut(s)	352, 924
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	171, 1227, 1402
NcoI	CCATGG	1 cut(s)	235
NdeI	CATATG	2 cut(s)	217, 1032
NdeII	GATC	3 cut(s)	224, 239, 415
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	2 cut(s)	510, 573
PaeI	GCATGC	1 cut(s)	573
PagI	TCATGA	1 cut(s)	1384
PctI	GAATGC	2 cut(s)	352, 924
PfeI	GAWTC	6 cut(s)	487, 640, 658, 1151, 1209, 1420
PkrI	GCNGC	6 cut(s)	76, 173, 469, 595, 705, 789
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	4 cut(s)	266, 445, 556, 677
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	708
PsuI	RGATCY	3 cut(s)	224, 239, 415
RsaI	GTAC	3 cut(s)	233, 479, 1163
RsaNI	GTAC	3 cut(s)	232, 478, 1162
SaqAI	TTAA	4 cut(s)	774, 1128, 1188, 1438
SatI	GCNGC	6 cut(s)	75, 172, 468, 594, 704, 788
Sau3AI	GATC	3 cut(s)	224, 239, 415
Sau96I	GGNCC	4 cut(s)	266, 445, 556, 677
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	29, 1292
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	2 cut(s)	313, 704
SinI	GGWCC	2 cut(s)	445, 677
SphI	GCATGC	1 cut(s)	573
Sse9I	AATT	8 cut(s)	285, 531, 538, 648, 741, 997, 1303, 1323
SsiI	CCGC	4 cut(s)	74, 136, 169, 172
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	235, 588
TaaI	ACNGT	5 cut(s)	277, 699, 888, 940, 1197
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	1 cut(s)	1409
TasI	AATT	8 cut(s)	285, 531, 538, 648, 741, 997, 1303, 1323
TatI	WGTACW	1 cut(s)	1161
TauI	GCSGC	2 cut(s)	77, 174
TfiI	GAWTC	6 cut(s)	487, 640, 658, 1151, 1209, 1420
Tru1I	TTAA	4 cut(s)	774, 1128, 1188, 1438
Tru9I	TTAA	4 cut(s)	774, 1128, 1188, 1438
TscAI	CASTG	3 cut(s)	445, 943, 1297
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	4 cut(s)	467, 593, 703, 787
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	4 cut(s)	919, 1049, 1206, 1412
TspGWI	ACGGA	2 cut(s)	29, 66
TspRI	CASTG	3 cut(s)	445, 943, 1297
VpaK11BI	GGWCC	2 cut(s)	445, 677
VspI	ATTAAT	1 cut(s)	774
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	538, 1303
XceI	RCATGY	2 cut(s)	510, 573
XmiI	GTMKAC	1 cut(s)	1104
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.