Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Forward (+)

958641 .. 962968

Gene Structure 4328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAGGAGCAGAGCACGAAGACGACGACGAAGCATCGAAGATTCTGGACATGGCTCACAGCATCAGTCTTATTCAGACTCATCCTCATCTACTTCCCCCAAAATCTCAACCTCTCTTCCCGCCCCGAAGTCTCCACTCCTCTCACCAGCCTCCGCCGCCTCGCCGAAGGATACTGGTTGAAGCAATCTTCCATGTCTCCCTATGCAGGATCGATGTACCACGGATCTCCTTTGCTGCTCTCACTTCTTGGCCCTCTCACAGTCCAACGAATTGACGGGCTGCCCAGTCATCTTTTATGCGGTTTGGTTTTTGTGGCTGCAGATGTATTGAATTCATTGCTTATTCGTGCTACTGGTCAGACTCTTCAGATTGCATATAGGCAGAGTTTGAAATCACTGGATCTTGATATGATATCAGAAACCATGGAGACCCTCCCTTCGGGAGATATTGCTGCTCTAATCTACTTGTGGAACCCTTTCACAATAGCTGCATGTGTGGGGTTGTCAACATCTCCAATCGAAAATCTGGCCATCATGTTGGCCCTCTATGGAGCATGTAAACGACTGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACACACCTGTCTCTTTATCCTATAATTCTTGTTATTCCGATTATTCTCTTATTAGGTAATGGTCCAGATACTCCTAGACAATTGTTCTTACTAAGAAGGCATGGGAAAGTTGAAGAACACTCCTCAAGTGATAGTTGTGAAAAGGAGAAAGTTAGTGATCAATCAAAACTACTCAATCTATTTTGTTGGAGACCTGTCATGCTTTTCTTGTTGTGGACTGTAATGTGGGCAGTCTATGTGTTACTTCTATGTGGCGTATCTGTTAAACAGTATGGAGGTCTTCGGGAGATGTTTACAAGTATGTACGGTTTCATTCTCACTGTACCAGATTTGTCTCCAAACATAGGTGTCTTATGGTACTTCTTTGCCGAGGTCTTCGATTTTTTCAGAAACTTTTTCCTGATTGTTTTCCAGATGAATATTCTCTTTATGATATTCCCATTGGCCATACGGCTGCACCACCGCCCCTGCTTTCTTGCTTTTGTCTACATTACAATCTCGTCAATGCTCAAGTCCTATCCATCTGTTGGGGATTCTGCTCTGTACTTGGGTTTGTTGGGCTGGTTTGTTTTTGAACTGTCAGAAATGAAATTCTCGTTCTTCCTCTTCTGTGTTTATGTCGGGGTTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGAACAGGAAATGCAAATTTCTACTTTGCGACTGCAATGGCTTATGCCTGTTTGCAGATTGTTTTGGTGGTTGAGAGTGTAAGTGCAATGCTCAATCACGACAGGAAGTTGAGAAATCTATCAAGTGCAAAGCTTCAAGATGGAAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

474

Amino Acids

53.55

Weight (kDa)

8.86

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	21 - 438	1.1e-110	GPI transamidase subunit PIG-U

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1127
AccI	GTMKAC	1 cut(s)	1086
AciI	CCGC	5 cut(s)	121, 154, 157, 300, 1063
AclWI	GGATC	3 cut(s)	217, 232, 408
AcoI	YGGCCR	2 cut(s)	528, 1044
AcsI	RAATTY	3 cut(s)	331, 1190, 1285
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	5 cut(s)	218, 905, 924, 959, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	206, 439, 944, 1127
AgsI	TTSAA	6 cut(s)	181, 331, 391, 713, 1175, 1406
AluBI	AGCT	2 cut(s)	488, 1402
AluI	AGCT	2 cut(s)	488, 1402
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	6 cut(s)	136, 201, 422, 615, 784, 939
AlwI	GGATC	3 cut(s)	217, 232, 408
AoxI	GGCC	4 cut(s)	250, 528, 540, 1044
ApeKI	GCWGC	7 cut(s)	235, 280, 317, 452, 488, 578, 1054
ApoI	RAATTY	3 cut(s)	331, 1190, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	251, 541, 662
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	662
BalI	TGGCCA	2 cut(s)	530, 1046
BbsI	GAAGAC	3 cut(s)	26, 872, 967
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	7 cut(s)	222, 267, 304, 439, 475, 565, 1041
BccI	CCATC	4 cut(s)	539, 582, 1129, 1403
BceAI	ACGGC	1 cut(s)	1067
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	6 cut(s)	136, 201, 422, 615, 784, 939
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	8 cut(s)	157, 236, 281, 318, 453, 489, 579, 1055
BlsI	GCNGC	8 cut(s)	158, 237, 282, 319, 454, 490, 580, 1056
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	3 cut(s)	251, 541, 662
BmiI	GGNNCC	2 cut(s)	473, 570
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	43, 71, 1236
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	3 cut(s)	26, 872, 967
Bpu10I	CCTNAGC	1 cut(s)	1235
BpuEI	CTTGAG	2 cut(s)	709, 1094
Bsa29I	ATCGAT	1 cut(s)	212
BsaI	GGTCTC	2 cut(s)	422, 784
BsaJI	CCNNGG	4 cut(s)	220, 423, 573, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 439, 944, 1127
Bse1I	ACTGG	5 cut(s)	179, 285, 358, 402, 570
Bse3DI	GCAATG	3 cut(s)	335, 1311, 1362
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	220, 423, 573, 969
BseGI	GGATG	2 cut(s)	81, 593
BseLI	CCNNNNNNNGG	4 cut(s)	206, 439, 944, 1127
BseMI	GCAATG	3 cut(s)	335, 1311, 1362
BseNI	ACTGG	5 cut(s)	179, 285, 358, 402, 570
BseRI	GAGGAG	3 cut(s)	20, 129, 712
BseXI	GCAGC	7 cut(s)	222, 267, 304, 439, 475, 565, 1041
BsgI	GTGCAG	1 cut(s)	1040
BshFI	GGCC	4 cut(s)	252, 530, 542, 1046
BshVI	ATCGAT	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	17
BslI	CCNNNNNNNGG	4 cut(s)	206, 439, 944, 1127
BsmAI	GTCTC	6 cut(s)	136, 201, 422, 615, 784, 939
BsnI	GGCC	4 cut(s)	252, 530, 542, 1046
Bso31I	GGTCTC	2 cut(s)	422, 784
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	209, 224, 400, 757
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	5 cut(s)	121, 154, 157, 300, 1063
BspANI	GGCC	4 cut(s)	252, 530, 542, 1046
BspDI	ATCGAT	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	473, 570
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	3 cut(s)	217, 232, 408
BspTNI	GGTCTC	2 cut(s)	422, 784
BsrDI	GCAATG	3 cut(s)	335, 1311, 1362
BsrI	ACTGG	5 cut(s)	179, 285, 358, 402, 570
BssECI	CCNNGG	4 cut(s)	220, 423, 573, 969
BssMI	GATC	4 cut(s)	209, 224, 400, 757
BssT1I	CCWWGG	2 cut(s)	423, 573
Bst4CI	ACNGT	6 cut(s)	262, 820, 870, 908, 922, 1179
Bst6I	CTCTTC	3 cut(s)	121, 369, 1211
BstDEI	CTNAG	2 cut(s)	692, 1235
BstDSI	CCRYGG	2 cut(s)	220, 423
BstF5I	GGATG	2 cut(s)	81, 593
BstKTI	GATC	4 cut(s)	212, 227, 403, 760
BstMAI	GTCTC	6 cut(s)	136, 201, 422, 615, 784, 939
BstMBI	GATC	4 cut(s)	209, 224, 400, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	495, 558
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	222, 267, 304, 439, 475, 565, 1041
BstV2I	GAAGAC	3 cut(s)	26, 872, 967
BstX2I	RGATCY	2 cut(s)	224, 400
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	2 cut(s)	224, 400
Bsu15I	ATCGAT	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	4 cut(s)	252, 530, 542, 1046
BsuTUI	ATCGAT	1 cut(s)	212
BtgI	CCRYGG	2 cut(s)	220, 423
BtsCI	GGATG	2 cut(s)	81, 593
BtsIMutI	CAGTG	2 cut(s)	395, 918
Cfr13I	GGNCC	3 cut(s)	251, 541, 662
ClaI	ATCGAT	1 cut(s)	212
Csp6I	GTAC	5 cut(s)	217, 904, 923, 958, 1144
CviAII	CATG	9 cut(s)	51, 193, 424, 492, 535, 555, 595, 701, 799
CviQI	GTAC	5 cut(s)	217, 904, 923, 958, 1144
DdeI	CTNAG	2 cut(s)	692, 1235
DpnI	GATC	4 cut(s)	211, 226, 402, 759
DpnII	GATC	4 cut(s)	209, 224, 400, 757
EaeI	YGGCCR	2 cut(s)	528, 1044
Eam1104I	CTCTTC	3 cut(s)	121, 369, 1211
EarI	CTCTTC	3 cut(s)	121, 369, 1211
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	423, 573
Eco31I	GGTCTC	2 cut(s)	422, 784
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	423, 573
ErhI	CCWWGG	2 cut(s)	423, 573
FaeI	CATG	9 cut(s)	54, 196, 427, 495, 538, 558, 598, 704, 802
FatI	CATG	9 cut(s)	50, 192, 423, 491, 534, 554, 594, 700, 798
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	8 cut(s)	157, 236, 281, 318, 453, 489, 579, 1055
FokI	GGATG	2 cut(s)	68, 600
Fsp4HI	GCNGC	8 cut(s)	157, 236, 281, 318, 453, 489, 579, 1055
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	8 cut(s)	157, 236, 281, 318, 453, 489, 579, 1055
HaeIII	GGCC	4 cut(s)	252, 530, 542, 1046
Hin1II	CATG	9 cut(s)	54, 196, 427, 495, 538, 558, 598, 704, 802
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	1400
HinfI	GANTC	4 cut(s)	42, 78, 361, 1133
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	5 cut(s)	507, 560, 816, 894, 1087
Hpy188I	TCNGA	7 cut(s)	77, 360, 369, 418, 639, 989, 1183
Hpy188III	TCNNGA	9 cut(s)	46, 404, 441, 665, 884, 1000, 1012, 1367, 1406
Hpy8I	GTNNAC	5 cut(s)	507, 560, 816, 894, 1087
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	3 cut(s)	161, 447, 690
HpyCH4III	ACNGT	6 cut(s)	262, 820, 870, 908, 922, 1179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	692, 1235
Hsp92II	CATG	9 cut(s)	54, 196, 427, 495, 538, 558, 598, 704, 802
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	209, 224, 400, 757
LmnI	GCTCC	2 cut(s)	7, 551
Lsp1109I	GCAGC	7 cut(s)	222, 267, 304, 439, 475, 565, 1041
LweI	GCATC	3 cut(s)	43, 71, 1236
MaeI	CTAG	1 cut(s)	675
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	4 cut(s)	211, 226, 402, 759
MboI	GATC	4 cut(s)	209, 224, 400, 757
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	2 cut(s)	224, 400
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	2 cut(s)	530, 1046
MluCI	AATT	6 cut(s)	270, 331, 624, 680, 1190, 1285
MluNI	TGGCCA	2 cut(s)	530, 1046
MlyI	GAGTC	2 cut(s)	72, 355
MmeI	TCCRAC	2 cut(s)	289, 767
Mox20I	TGGCCA	2 cut(s)	530, 1046
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	2 cut(s)	530, 1046
MseI	TTAA	1 cut(s)	864
Msp20I	TGGCCA	2 cut(s)	530, 1046
MunI	CAATTG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	4 cut(s)	209, 224, 400, 757
NlaIII	CATG	9 cut(s)	54, 196, 427, 495, 538, 558, 598, 704, 802
NlaIV	GGNNCC	2 cut(s)	473, 570
NmeAIII	GCCGAG	1 cut(s)	994
NspI	RCATGY	2 cut(s)	495, 558
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	42, 1133
PflMI	CCANNNNNTGG	1 cut(s)	1127
PkrI	GCNGC	8 cut(s)	158, 237, 282, 319, 454, 490, 580, 1056
PleI	GAGTC	2 cut(s)	72, 355
PpsI	GAGTC	2 cut(s)	72, 355
PspN4I	GGNNCC	2 cut(s)	473, 570
PspPI	GGNCC	3 cut(s)	251, 541, 662
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	224, 400
RsaI	GTAC	5 cut(s)	218, 905, 924, 959, 1145
RsaNI	GTAC	5 cut(s)	217, 904, 923, 958, 1144
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	8 cut(s)	157, 236, 281, 318, 453, 489, 579, 1055
Sau3AI	GATC	4 cut(s)	209, 224, 400, 757
Sau96I	GGNCC	3 cut(s)	251, 541, 662
SchI	GAGTC	2 cut(s)	72, 355
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	3 cut(s)	43, 71, 1236
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	724, 1109
SmoI	CTYRAG	2 cut(s)	724, 1109
Sse9I	AATT	6 cut(s)	270, 331, 624, 680, 1190, 1285
SsiI	CCGC	5 cut(s)	121, 154, 157, 300, 1063
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	423, 573
TaaI	ACNGT	6 cut(s)	262, 820, 870, 908, 922, 1179
TaqI	TCGA	4 cut(s)	37, 212, 519, 978
TasI	AATT	6 cut(s)	270, 331, 624, 680, 1190, 1285
TatI	WGTACW	1 cut(s)	1143
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	42, 1133
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	2 cut(s)	402, 925
TseI	GCWGC	7 cut(s)	235, 280, 317, 452, 488, 578, 1054
TspDTI	ATGAA	4 cut(s)	324, 901, 1031, 1202
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	402, 925
Van91I	CCANNNNNTGG	1 cut(s)	1127
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	3 cut(s)	331, 1190, 1285
XceI	RCATGY	2 cut(s)	495, 558
XmiI	GTMKAC	1 cut(s)	1086
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.