Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Reverse (-)

5853362 .. 5857562

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCAATGCTTATTCGTGCTAATGCTTATTCGTGCTACTGGTCAGACTCTTCAGGTTGCATACCGGCAGAGTTTGAAGTCACTAGATCTTGATACGACATTAGAAAGCATTGAGGTGCTCCCTTCTGGAGATATTGCTGCTCTTGTGTATCTATGGAATCCTTTCACGATAGTTGCATGTGTGGGTTTGTCAACATCTCCAATTGAGAATTTTGTGATCACACTGGCCTTGTATGGAGCATGTAAAAGACTGGTTCCCTTGGCTGCTTTTGGGTGGGTCATAGCAACACATCTGTCTCTTTATCCTATGATTCTCATAATTCCAATGATTCTTTTATTAGGATATGGTCCAGATACTCCAAGGAAACTGTTGCTACTGAGGAGATATGGTAATGTTGAAGATAACTCCTCAAGTGATAGTTGTCAACAACAGGAGAAAGTTATTAATCAATCAGAGCTACCCCGTGTTTTCTCTTGGAGACCTGTCGGACTGTTCTTATTGTGGGCTATTATGTGGTCAGCCTACGTGTTATTTCTCTGTGGTGTATCTGCTAAACAGTATGGTGATCTCTGGGAGATGTTTGAAAGACTGTATGGTTTCATTCTCACTGTGCAAGATTTGTCTCCAAATATAGGTGTCTTATGGTATTTCTTTGCAGAGGTCTTTGATTTTTTCAGAAATTTCTTCCTGATAGTTTTCCAAATGAATATTCTCTTTATGATAGTTCCATTGGCCATACGACTGAAGCATCGTCCGTGCTTTCTTGCTTTTATCTACATCACTATCTCCTCAATGCTTAAGTCTTATCCTTCTGTTGGGGATTCAGCTCTGTACTTTGGTTTGTTGGGCTGGTTTGTTAATGAACTGTCAGAAATGCGATTCTCGTCCTGCCTCTTCAGCGTTTATGTTGGCATTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGCACTGGCAATGCAAATTTCTACTTCGCTACTGCAATTACTTATGCTTGTTTGCAGATTGTTTTGGTGATTGAGAGTGTAAGTGCAATGCTCAATCATGACAGGAAGCTAAGAAAGCTATCAAACACAAAGATTCATGCTGACAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

370

Amino Acids

42.05

Weight (kDa)

8.35

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	3 cut(s)	208, 679, 973
AcuI	CTGAAG	3 cut(s)	35, 764, 880
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	632, 815
AflII	CTTAAG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	76, 398, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	4 cut(s)	457, 827, 1066, 1075
AluI	AGCT	4 cut(s)	457, 827, 1066, 1075
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	3 cut(s)	300, 472, 627
AoxI	GGCC	2 cut(s)	225, 732
ApeKI	GCWGC	2 cut(s)	137, 263
ApoI	RAATTY	3 cut(s)	208, 679, 973
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	575, 1036
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	962
BalI	TGGCCA	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	124, 250
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	300, 472, 627
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	797
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	138, 264
BlsI	GCNGC	2 cut(s)	139, 265
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	2 cut(s)	757, 924
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	258, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 815
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	4 cut(s)	43, 228, 255, 967
Bse3DI	GCAATG	3 cut(s)	11, 973, 1050
BseDI	CCNNGG	2 cut(s)	258, 359
BseLI	CCNNNNNNNGG	2 cut(s)	632, 815
BseMI	GCAATG	3 cut(s)	11, 973, 1050
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	4 cut(s)	43, 228, 255, 967
BseRI	GAGGAG	3 cut(s)	394, 397, 778
BseSI	GKGCMC	1 cut(s)	962
BseXI	GCAGC	2 cut(s)	124, 250
BshFI	GGCC	2 cut(s)	227, 734
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	632, 815
BsmAI	GTCTC	3 cut(s)	300, 472, 627
BsnI	GGCC	2 cut(s)	227, 734
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	2 cut(s)	120, 962
Bsp143I	GATC	3 cut(s)	85, 216, 565
BspANI	GGCC	2 cut(s)	227, 734
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	3 cut(s)	11, 973, 1050
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	4 cut(s)	43, 228, 255, 967
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	258, 359
BssMI	GATC	3 cut(s)	85, 216, 565
BssT1I	CCWWGG	2 cut(s)	258, 359
Bst4CI	ACNGT	6 cut(s)	369, 492, 558, 591, 610, 867
Bst6I	CTCTTC	2 cut(s)	54, 899
BstAFI	CTTAAG	1 cut(s)	797
BstBAI	YACGTR	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	377, 923, 1067
BstKTI	GATC	3 cut(s)	88, 219, 568
BstMAI	GTCTC	3 cut(s)	300, 472, 627
BstMBI	GATC	3 cut(s)	85, 216, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	897, 1072
BstNSI	RCATGY	2 cut(s)	180, 243
BstSLI	GKGCMC	1 cut(s)	962
BstV1I	GCAGC	2 cut(s)	124, 250
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	227, 734
BtsIMutI	CAGTG	3 cut(s)	221, 606, 960
CciI	TCATGA	1 cut(s)	1054
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	4 cut(s)	177, 240, 1055, 1094
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	3 cut(s)	377, 923, 1067
DpnI	GATC	3 cut(s)	87, 218, 567
DpnII	GATC	3 cut(s)	85, 216, 565
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	54, 899
EarI	CTCTTC	2 cut(s)	54, 899
Eco130I	CCWWGG	2 cut(s)	258, 359
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	3 cut(s)	35, 764, 880
EcoT14I	CCWWGG	2 cut(s)	258, 359
ErhI	CCWWGG	2 cut(s)	258, 359
FaeI	CATG	4 cut(s)	180, 243, 1058, 1097
FatI	CATG	4 cut(s)	176, 239, 1054, 1093
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	138, 264
Fsp4HI	GCNGC	2 cut(s)	138, 264
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	2 cut(s)	138, 264
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	227, 734
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	4 cut(s)	180, 243, 1058, 1097
HincII	GTYRAC	2 cut(s)	192, 425
HindII	GTYRAC	2 cut(s)	192, 425
HinfI	GANTC	7 cut(s)	46, 157, 310, 328, 821, 879, 1090
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	575, 1036
Hpy166II	GTNNAC	2 cut(s)	192, 425
Hpy188I	TCNGA	5 cut(s)	45, 454, 488, 677, 871
Hpy188III	TCNNGA	6 cut(s)	89, 126, 166, 350, 688, 1055
Hpy8I	GTNNAC	2 cut(s)	192, 425
HpyAV	CCTTC	2 cut(s)	132, 819
HpyCH4III	ACNGT	6 cut(s)	369, 492, 558, 591, 610, 867
HpyCH4IV	ACGT	1 cut(s)	525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	897, 1072
HpyF3I	CTNAG	3 cut(s)	377, 923, 1067
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	180, 243, 1058, 1097
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	85, 216, 565
LmnI	GCTCC	2 cut(s)	123, 236
Lsp1109I	GCAGC	2 cut(s)	124, 250
LweI	GCATC	2 cut(s)	757, 924
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	3 cut(s)	87, 218, 567
MboI	GATC	3 cut(s)	85, 216, 565
MboII	GAAGA	4 cut(s)	41, 410, 676, 886
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	120, 962
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	6 cut(s)	201, 208, 318, 679, 973, 993
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	106, 372, 418, 652, 799, 902, 929, 948
Mox20I	TGGCCA	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	4 cut(s)	444, 798, 858, 1108
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	897, 1072
NdeII	GATC	3 cut(s)	85, 216, 565
NlaIII	CATG	4 cut(s)	180, 243, 1058, 1097
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	78
NspI	RCATGY	2 cut(s)	180, 243
PagI	TCATGA	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	6 cut(s)	157, 310, 328, 821, 879, 1090
PkrI	GCNGC	2 cut(s)	139, 265
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	444, 798, 858, 1108
SatI	GCNGC	2 cut(s)	138, 264
Sau3AI	GATC	3 cut(s)	85, 216, 565
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	120, 962
SfaNI	GCATC	2 cut(s)	757, 924
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	409, 797
SmoI	CTYRAG	2 cut(s)	409, 797
Sse9I	AATT	6 cut(s)	201, 208, 318, 679, 973, 993
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	258, 359
TaaI	ACNGT	6 cut(s)	369, 492, 558, 591, 610, 867
TaiI	ACGT	1 cut(s)	528
TasI	AATT	6 cut(s)	201, 208, 318, 679, 973, 993
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	6 cut(s)	157, 310, 328, 821, 879, 1090
Tru1I	TTAA	4 cut(s)	444, 798, 858, 1108
Tru9I	TTAA	4 cut(s)	444, 798, 858, 1108
TscAI	CASTG	3 cut(s)	228, 613, 967
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	137, 263
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	589, 719, 876, 1082
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	228, 613, 967
Vha464I	CTTAAG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	208, 679, 973
XceI	RCATGY	2 cut(s)	180, 243
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.