Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009567

Physical Location & Seq

Genomic Coordinates Forward (+)

10246789 .. 10252108

Gene Structure 5320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGAGGTGAAGGAGGAGCAGAGCACGAAGAGGAAGAAGCAGAAGCAGGGAAGGTTCTGGACATGGGTTGCAGCGTCAGTGTTGTTCAGGCTCATTCTCATCTACTTCCCCAAAAATCTCAACCTCTCTTCTCGCCCCGAAGTCTCCACCCCTCTCACCAGCCTCCGTCGCCTGGCTGAGGGTTACTGGTTGAAGCAGTCGTCAATGTCTCCCTATGCAGGATCTATGTACCACGGATCTCCTTTGTTACTCTCACTTCTTGGGCCACTCACAGTTAAAAGAATTGAAGGGCAACCCAGTCATCTTCTATGCAGTTTGGTTTTTGTGGTTGCAGATATATTGAATGCAATGGTTATTCGTGCTACTGGTCAGACTCTTCAGGTTGCATATAGGCAGAGTTTGAAATCACTAGATCTTGATACGATATCAGAAAGCATGGAGGTCCTCTCTTCAGGAGATATTGCTGCTCTTGTGTACCTATGGAATCCTTTCACAATAGTTGCATGTGTGGGTTTGTCAACATCTCCAATTGAAAATCTGGCCATCATATTGGCCCTCTATGGAGCATGTAAACGAATGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACACATCTGTCTCTTTATCCTATGATTCTCATAATTCCAATAATTCTTTTATTAGGATATGGTCCAGATACTCCTCGGAAATTATTGCTGATGAGGAGATGTGGTAAAGTTGAAGATAACTCGTCAAGCGATAGTTGTCAACAACAGGAGAAAGTTATTAATCAATCAGACCTACCCAAAGTTTTCGCTTGGGGACCTCCCATGCTTTTCTTATTGTGGGCTATTATGTGGTCAGTCTATGTGTTACTCCTGTGTGGCATATCTGTTAAACAGTATGGTGGTCTCTGGGAGATGTTTGAAAGAATGTATGGTTTCATTCTTACTGTGCAAGATTTGTCTCCGAATATAGGTGTTTTATGGTATTTCTTTGCAGAGGTCTTCGATTTTTTCAGAAATTTCTTCCTGATTGTTTTCCATATGAATATTCTCTTTATGATATTTCCATTGGCCATACGGCTCAAGCACCGTCCCTGCTTTCTTGCTTTTGTCTACATCACCATCTCATCAATGCTTAAGTCTTATCCTTCTGTTGGGGATTCAGCTCTGTACTTTGGTTTGTTGGGCTGGTTTGTTAATGAACTGTCAGAAATGCAATTCTCGTTCTGCCTCTTCAGTGTTTATGTTGGGGTTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGCACTGGCAATGCAAATTTCTACTTTGCTACTGCAATTACTTATGCTTGTTTGCAGATGGTGCTGGTGGTTGAAAGTGTTAGTGCAATGCTCAATCATGACCGGAAGCTAAAAAAGTTAACTAATGCAAAGCTTCAAAATGGAAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0042765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-U

Protein Analysis

479

Amino Acids

54.17

Weight (kDa)

9.19

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca	FvH4_5g01570 FvH4_5g01570
malus_domestica	MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica	Prupe.5G091900_v2.0.a1
pyrus_communis	pycom04g05980 pycom06g07290
rosa_chinensis	RchiOBHm_Chr7g0199111
rosa_laevigata	RLG00000003814
rosa_multiflora	Rmu_sc0006266.1_g000049
rosa_roxburghii	Rroxscaffold_3G00257070
rosa_rugosa	Rorug07G0052700 Rorug07G0052800
rosa_samantha	Rh7BG179700 Rh7DG179200
rosa_wichuraiana	Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1101
AclWI	GGATC	2 cut(s)	229, 244
AcoI	YGGCCR	2 cut(s)	540, 1059
AcsI	RAATTY	2 cut(s)	1006, 1300
AcuI	CTGAAG	3 cut(s)	362, 435, 1207
AfaI	GTAC	3 cut(s)	230, 476, 1160
AfiI	CCNNNNNNNGG	5 cut(s)	172, 178, 218, 959, 1142
AflII	CTTAAG	1 cut(s)	1124
AgsI	TTSAA	9 cut(s)	193, 287, 343, 403, 533, 725, 911, 1358, 1421
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	1154, 1393, 1417
AluI	AGCT	3 cut(s)	1154, 1393, 1417
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	5 cut(s)	148, 213, 627, 899, 954
AlwI	GGATC	2 cut(s)	229, 244
AoxI	GGCC	4 cut(s)	263, 540, 552, 1059
ApeKI	GCWGC	3 cut(s)	71, 464, 590
ApoI	RAATTY	2 cut(s)	1006, 1300
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	488
AspS9I	GGNCC	5 cut(s)	263, 442, 553, 674, 806
AsuHPI	GGTGA	3 cut(s)	19, 148, 1099
AvaII	GGWCC	3 cut(s)	442, 674, 806
BaeGI	GKGCMC	1 cut(s)	1289
BalI	TGGCCA	2 cut(s)	542, 1061
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	83, 451, 577
BccI	CCATC	4 cut(s)	551, 594, 1118, 1336
BceAI	ACGGC	1 cut(s)	1082
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	5 cut(s)	148, 213, 627, 899, 954
BfaI	CTAG	1 cut(s)	410
BfrI	CTTAAG	1 cut(s)	1124
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	72, 465, 591
BlsI	GCNGC	3 cut(s)	73, 466, 592
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	3 cut(s)	442, 674, 806
BmgT120I	GGNCC	5 cut(s)	263, 442, 553, 674, 806
BmiI	GGNNCC	2 cut(s)	582, 807
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	1251
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu10I	CCTNAGC	2 cut(s)	177, 1250
BpuEI	CTTGAG	1 cut(s)	1055
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	232, 585, 686
BsaWI	WCCGGW	1 cut(s)	1386
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 178, 218, 959, 1142
Bse1I	ACTGG	4 cut(s)	191, 297, 370, 1294
Bse3DI	GCAATG	3 cut(s)	354, 1300, 1377
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	232, 585, 686
BseGI	GGATG	1 cut(s)	605
BseLI	CCNNNNNNNGG	5 cut(s)	172, 178, 218, 959, 1142
BseMI	GCAATG	3 cut(s)	354, 1300, 1377
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	4 cut(s)	191, 297, 370, 1294
BseRI	GAGGAG	3 cut(s)	29, 675, 721
BseSI	GKGCMC	1 cut(s)	1289
BseXI	GCAGC	3 cut(s)	83, 451, 577
BshFI	GGCC	4 cut(s)	265, 542, 554, 1061
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	1387
BslFI	GGGAC	2 cut(s)	819, 1065
BslI	CCNNNNNNNGG	5 cut(s)	172, 178, 218, 959, 1142
BsmAI	GTCTC	5 cut(s)	148, 213, 627, 899, 954
BsmFI	GGGAC	2 cut(s)	819, 1065
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	4 cut(s)	265, 542, 554, 1061
Bso31I	GGTCTC	1 cut(s)	899
Bsp1286I	GDGCHC	2 cut(s)	26, 1289
Bsp143I	GATC	3 cut(s)	221, 236, 412
BspANI	GGCC	4 cut(s)	265, 542, 554, 1061
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	1381
BspLI	GGNNCC	2 cut(s)	582, 807
BspPI	GGATC	2 cut(s)	229, 244
BspTI	CTTAAG	1 cut(s)	1124
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	3 cut(s)	354, 1300, 1377
BsrI	ACTGG	4 cut(s)	191, 297, 370, 1294
BssECI	CCNNGG	3 cut(s)	232, 585, 686
BssMI	GATC	3 cut(s)	221, 236, 412
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	5 cut(s)	274, 885, 937, 1079, 1194
Bst6I	CTCTTC	5 cut(s)	23, 133, 381, 454, 1226
BstAFI	CTTAAG	1 cut(s)	1124
BstAPI	GCANNNNNTGC	1 cut(s)	1345
BstDEI	CTNAG	2 cut(s)	177, 1250
BstDSI	CCRYGG	1 cut(s)	232
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	605
BstKTI	GATC	3 cut(s)	224, 239, 415
BstMAI	GTCTC	5 cut(s)	148, 213, 627, 899, 954
BstMBI	GATC	3 cut(s)	221, 236, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 1345
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	2 cut(s)	507, 570
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	1289
BstV1I	GCAGC	3 cut(s)	83, 451, 577
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	3 cut(s)	221, 236, 412
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	3 cut(s)	221, 236, 412
BsuRI	GGCC	4 cut(s)	265, 542, 554, 1061
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	3 cut(s)	84, 1231, 1287
CciI	TCATGA	1 cut(s)	1381
Cfr13I	GGNCC	5 cut(s)	263, 442, 553, 674, 806
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	229, 475, 1159
CviAII	CATG	7 cut(s)	63, 436, 504, 567, 607, 814, 1382
CviQI	GTAC	3 cut(s)	229, 475, 1159
DdeI	CTNAG	2 cut(s)	177, 1250
DpnI	GATC	3 cut(s)	223, 238, 414
DpnII	GATC	3 cut(s)	221, 236, 412
EaeI	YGGCCR	2 cut(s)	540, 1059
Eam1104I	CTCTTC	5 cut(s)	23, 133, 381, 454, 1226
EarI	CTCTTC	5 cut(s)	23, 133, 381, 454, 1226
Eco130I	CCWWGG	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	442, 674, 806
Eco57I	CTGAAG	3 cut(s)	362, 435, 1207
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	442, 806
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	7 cut(s)	66, 439, 507, 570, 610, 817, 1385
FaqI	GGGAC	2 cut(s)	819, 1065
FatI	CATG	7 cut(s)	62, 435, 503, 566, 606, 813, 1381
FauNDI	CATATG	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	3 cut(s)	72, 465, 591
FokI	GGATG	1 cut(s)	612
Fsp4HI	GCNGC	3 cut(s)	72, 465, 591
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	3 cut(s)	72, 465, 591
HaeIII	GGCC	4 cut(s)	265, 542, 554, 1061
HapII	CCGG	1 cut(s)	1387
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	7 cut(s)	66, 439, 507, 570, 610, 817, 1385
HincII	GTYRAC	3 cut(s)	519, 752, 1404
HindII	GTYRAC	3 cut(s)	519, 752, 1404
HindIII	AAGCTT	1 cut(s)	1415
HinfI	GANTC	4 cut(s)	373, 484, 637, 1148
HpaI	GTTAAC	1 cut(s)	1404
HpaII	CCGG	1 cut(s)	1387
HphI	GGTGA	3 cut(s)	19, 148, 1099
Hpy166II	GTNNAC	6 cut(s)	475, 519, 572, 752, 1102, 1404
Hpy188I	TCNGA	7 cut(s)	372, 430, 690, 781, 954, 1004, 1198
Hpy188III	TCNNGA	6 cut(s)	58, 416, 453, 677, 1015, 1382
Hpy8I	GTNNAC	6 cut(s)	475, 519, 572, 752, 1102, 1404
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	4 cut(s)	4, 45, 281, 1146
HpyCH4III	ACNGT	5 cut(s)	274, 885, 937, 1079, 1194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 1345
HpyF3I	CTNAG	2 cut(s)	177, 1250
Hsp92II	CATG	7 cut(s)	66, 439, 507, 570, 610, 817, 1385
KspAI	GTTAAC	1 cut(s)	1404
Kzo9I	GATC	3 cut(s)	221, 236, 412
LmnI	GCTCC	2 cut(s)	16, 563
Lsp1109I	GCAGC	3 cut(s)	83, 451, 577
LweI	GCATC	1 cut(s)	1251
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	182, 246, 855
MalI	GATC	3 cut(s)	223, 238, 414
MboI	GATC	3 cut(s)	221, 236, 412
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	3 cut(s)	221, 236, 412
MhlI	GDGCHC	2 cut(s)	26, 1289
MlsI	TGGCCA	2 cut(s)	542, 1061
MluCI	AATT	9 cut(s)	282, 528, 645, 654, 692, 1006, 1205, 1300, 1320
MluNI	TGGCCA	2 cut(s)	542, 1061
MlyI	GAGTC	1 cut(s)	367
Mox20I	TGGCCA	2 cut(s)	542, 1061
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	2 cut(s)	542, 1061
MseI	TTAA	7 cut(s)	276, 771, 879, 1125, 1185, 1403, 1435
Msp20I	TGGCCA	2 cut(s)	542, 1061
MspCI	CTTAAG	1 cut(s)	1124
MspI	CCGG	1 cut(s)	1387
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	168, 1345
NdeI	CATATG	1 cut(s)	1029
NdeII	GATC	3 cut(s)	221, 236, 412
NlaIII	CATG	7 cut(s)	66, 439, 507, 570, 610, 817, 1385
NlaIV	GGNNCC	2 cut(s)	582, 807
NspI	RCATGY	2 cut(s)	507, 570
PagI	TCATGA	1 cut(s)	1381
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	484, 637, 1148
PkrI	GCNGC	3 cut(s)	73, 466, 592
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	2 cut(s)	442, 806
PshBI	ATTAAT	1 cut(s)	771
Psp5II	RGGWCCY	2 cut(s)	442, 806
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	582, 807
PspPI	GGNCC	5 cut(s)	263, 442, 553, 674, 806
PspPPI	RGGWCCY	2 cut(s)	442, 806
PsuI	RGATCY	3 cut(s)	221, 236, 412
RsaI	GTAC	3 cut(s)	230, 476, 1160
RsaNI	GTAC	3 cut(s)	229, 475, 1159
SaqAI	TTAA	7 cut(s)	276, 771, 879, 1125, 1185, 1403, 1435
SatI	GCNGC	3 cut(s)	72, 465, 591
Sau3AI	GATC	3 cut(s)	221, 236, 412
Sau96I	GGNCC	5 cut(s)	263, 442, 553, 674, 806
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	26, 1289
SfaNI	GCATC	1 cut(s)	1251
SinI	GGWCC	3 cut(s)	442, 674, 806
SmlI	CTYRAG	2 cut(s)	1070, 1124
SmoI	CTYRAG	2 cut(s)	1070, 1124
Sse9I	AATT	9 cut(s)	282, 528, 645, 654, 692, 1006, 1205, 1300, 1320
SspI	AATATT	1 cut(s)	1036
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	5 cut(s)	274, 885, 937, 1079, 1194
TaqI	TCGA	1 cut(s)	993
TasI	AATT	9 cut(s)	282, 528, 645, 654, 692, 1006, 1205, 1300, 1320
TatI	WGTACW	1 cut(s)	1158
TfiI	GAWTC	3 cut(s)	484, 637, 1148
Tru1I	TTAA	7 cut(s)	276, 771, 879, 1125, 1185, 1403, 1435
Tru9I	TTAA	7 cut(s)	276, 771, 879, 1125, 1185, 1403, 1435
TscAI	CASTG	3 cut(s)	84, 1231, 1294
TseI	GCWGC	3 cut(s)	71, 464, 590
TspDTI	ATGAA	3 cut(s)	916, 1046, 1203
TspGWI	ACGGA	2 cut(s)	155, 249
TspRI	CASTG	3 cut(s)	84, 1231, 1294
Vha464I	CTTAAG	1 cut(s)	1124
VpaK11BI	GGWCC	3 cut(s)	442, 674, 806
VspI	ATTAAT	1 cut(s)	771
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	2 cut(s)	1006, 1300
XceI	RCATGY	2 cut(s)	507, 570
XmiI	GTMKAC	1 cut(s)	1101
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.