Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

23738673 .. 23740384

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTACTTCTTCTACTCAGCTTCTACTGTCTTCTTCTTCTTTGTTTCACTCTCAAATTACCAAAAAGCCATTCCTTCTCCCGGCGACGAAGATCGGCGTTTGGAGACCGAAGAAGTCTCTCTCGTTATCATGTCGTCCTTCAGCCTCGGTTTCAGCTGCTTCTTCCGCCGTCGACGTCAATGAATCTGTGACTTCAGAGAAACCAACCAAAACGCTTCCGTTTCGAATCGGTCATGGTTTCGATCTACATCGTTTAGAGCCAGGGTATCCTCTGATCATCGGTGGGATTGTTATTCCTCATGATAGAGGCTGCGAAGCTCACTCCGATGGCGATGTGTTACTTCATTGTGTAGTGGATGCAATTTTGGGAGCACTAGGCCTTCCAGATATAGGTCAGATTTTCCCTGACTCTGATCCTAAATGGAAAGGAGCTGCTTCTTCTGTATTCATCAAAGAAGCTGTGAGACTCATGGACGAGGCAGGGTATGAGATAGGAAACCTAGACGCGACGTTGATTCTCCAGAGACCAAAAATTAGTCCACACAAAGAGACAATCCGATCCAATCTGTCCAAGCTTCTTGGAGCAGATCCTTCTGTAGTGAACTTGAAAGCCAAAACACATGAGAAAGTTGATAGCCTCGGAGAAAACAGAAGCATAGCAGCTCACACTGTTATTCTCCTCATGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

231

Amino Acids

24.81

Weight (kDa)

8.94

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	75 - 157	1.3e-34	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	509
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	3 cut(s)	410, 555, 584
AcuI	CTGAAG	2 cut(s)	126, 180
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	82, 392
AgsI	TTSAA	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	7 cut(s)	22, 158, 320, 434, 461, 577, 665
AluI	AGCT	7 cut(s)	22, 158, 320, 434, 461, 577, 665
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	5 cut(s)	100, 123, 460, 520, 545
AlwI	GGATC	3 cut(s)	410, 555, 584
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	4 cut(s)	158, 312, 434, 662
AsuC2I	CCSGG	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	145, 299, 421, 674
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	5 cut(s)	100, 123, 460, 520, 545
BfaI	CTAG	2 cut(s)	377, 503
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	4 cut(s)	159, 313, 435, 663
BlsI	GCNGC	4 cut(s)	160, 314, 436, 664
Bme1390I	CCNGG	2 cut(s)	83, 264
BmrFI	CCNGG	2 cut(s)	83, 264
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	100, 520
BsaJI	CCNNGG	3 cut(s)	147, 263, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 392
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	147, 263, 640
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	82, 392
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	4 cut(s)	145, 299, 421, 674
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	82, 392
BsmAI	GTCTC	5 cut(s)	100, 123, 460, 520, 545
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	2 cut(s)	100, 520
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	2 cut(s)	301, 684
BspPI	GGATC	3 cut(s)	410, 555, 584
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	2 cut(s)	100, 520
BssECI	CCNNGG	3 cut(s)	147, 263, 640
BssMI	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	30, 673
BstACI	GRCGYC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	6 cut(s)	96, 247, 279, 418, 563, 592
BstMAI	GTCTC	5 cut(s)	100, 123, 460, 520, 545
BstMBI	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	81, 262
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	4 cut(s)	145, 299, 421, 674
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	669
CciI	TCATGA	2 cut(s)	301, 684
CseI	GACGC	1 cut(s)	515
CviAII	CATG	6 cut(s)	132, 236, 302, 472, 623, 685
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	6 cut(s)	95, 246, 278, 417, 562, 591
DpnII	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
EciI	GGCGGA	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	381
Eco31I	GGTCTC	2 cut(s)	100, 520
Eco57I	CTGAAG	2 cut(s)	126, 180
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	6 cut(s)	135, 239, 305, 475, 626, 688
FaiI	YATR	9 cut(s)	133, 237, 303, 392, 473, 489, 624, 659, 686
FatI	CATG	6 cut(s)	131, 235, 301, 471, 622, 684
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	159, 313, 435, 663
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	159, 313, 435, 663
FspBI	CTAG	2 cut(s)	377, 503
GluI	GCNGC	4 cut(s)	159, 313, 435, 663
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	135, 239, 305, 475, 626, 688
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	5 cut(s)	185, 228, 410, 468, 517
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	175, 542, 604
Hpy188I	TCNGA	7 cut(s)	199, 276, 328, 399, 415, 560, 644
Hpy188III	TCNNGA	4 cut(s)	302, 386, 523, 685
Hpy8I	GTNNAC	3 cut(s)	175, 542, 604
Hpy99I	CGWCG	4 cut(s)	91, 176, 179, 514
HpyAV	CCTTC	4 cut(s)	86, 150, 392, 603
HpyCH4III	ACNGT	2 cut(s)	30, 673
HpyCH4IV	ACGT	2 cut(s)	177, 512
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	177, 512
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	6 cut(s)	135, 239, 305, 475, 626, 688
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
LmnI	GCTCC	3 cut(s)	371, 431, 584
LpnPI	CCDG	7 cut(s)	96, 249, 276, 399, 420, 468, 536
Lsp1109I	GCAGC	4 cut(s)	145, 299, 421, 674
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	377, 503
MaeII	ACGT	2 cut(s)	177, 512
MaeIII	GTNAC	2 cut(s)	190, 339
MalI	GATC	6 cut(s)	95, 246, 278, 417, 562, 591
MboI	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
MboII	GAAGA	8 cut(s)	3, 24, 27, 30, 103, 124, 156, 432
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	3 cut(s)	57, 363, 534
MlyI	GAGTC	2 cut(s)	404, 462
MnlI	CCTC	7 cut(s)	157, 282, 302, 309, 472, 650, 692
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	83, 264
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
NlaIII	CATG	6 cut(s)	135, 239, 305, 475, 626, 688
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	226
PagI	TCATGA	2 cut(s)	301, 684
PceI	AGGCCT	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	185, 228, 517
PkrI	GCNGC	4 cut(s)	160, 314, 436, 664
PleI	GAGTC	2 cut(s)	404, 462
PpsI	GAGTC	2 cut(s)	404, 462
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	173
SatI	GCNGC	4 cut(s)	159, 313, 435, 663
Sau3AI	GATC	6 cut(s)	93, 244, 276, 415, 560, 589
SchI	GAGTC	2 cut(s)	404, 462
ScrFI	CCNGG	2 cut(s)	83, 264
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	226
SgrDI	CGTCGACG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	57, 363, 534
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	377, 503
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	81, 262
TaaI	ACNGT	2 cut(s)	30, 673
TaiI	ACGT	2 cut(s)	180, 515
TaqI	TCGA	3 cut(s)	174, 226, 243
TaqII	GACCGA	2 cut(s)	124, 221
TasI	AATT	3 cut(s)	57, 363, 534
TfiI	GAWTC	3 cut(s)	185, 228, 517
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	158, 312, 434, 662
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	198, 335, 439
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	2 cut(s)	377, 503
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.