Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

21956411 .. 21958535

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1090700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCATGGCAGCTACTCCAGCGTGCGCCTCCTCAATCACCACCGCCACAACCACCAAGCCACTCACCCGCTCTCTTCCTCGTTCCCACCTCCCCGCCCTAAACCCCTACAGTCTTCAACCATCCTTGACTCCTCTGTCTCTCCGAACCCCCAAAACGACGCGCAGGCCTGTATTTTGCGCCTCCGCGAGCACGACCTTCGAGGTCGCCCAGGTTCCGGCTCCCGCCACTCCGTCCAAGCTCTTGCCTTTTCAGGTCGGGCACGGGTTCGACCTGCACCGGCTGGAGCCCGGGTACCCTCTGATAATCGGCGGCATCGACATACCCCACGATAGAGGCTGCGAGGCACATTCCGACGATGTGTTGCTTCACTGTGTGGTGGATGGGATATTGGGGGCGTTGGGGCTTCCGGATATCGGGCAGATATTTCCGAATTCGGATCCTAAGTGGAGGGGTGCAGCTTCCTCTGTTTTCATCAAAGAAGCTGTGAGATTGATGCACGAAGCAGGTTATGAGATTGGAAACTTAGATGCTACTTTGATTCTTCAAAGACCGAAATTAAGCCCGCACAAAGAGGTTATGAAGGCCAACTTAGCTAAGCTGCTTGGAGCAGACCCCTCCGTTGTGAATCTCAAAGCTAAAACTCATGAGAAGGTGGACAGTCTTGGCGAAAACCGAAGCATTGCAGCTCACACAGTGGTTCTTCTTATGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

240

Amino Acids

25.61

Weight (kDa)

9.1

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	84 - 236	2.3e-56	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
Acc36I	ACCTGC	2 cut(s)	282, 497
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	163, 188
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	7 cut(s)	45, 70, 96, 186, 225, 312, 566
AclWI	GGATC	2 cut(s)	434, 447
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	433
AdeI	CACNNNGTG	2 cut(s)	376, 697
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	217, 416
AgsI	TTSAA	2 cut(s)	119, 548
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	8 cut(s)	14, 241, 461, 485, 596, 601, 638, 689
AluI	AGCT	8 cut(s)	14, 241, 461, 485, 596, 601, 638, 689
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	434, 447
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	3 cut(s)	3, 167, 585
ApeKI	GCWGC	5 cut(s)	11, 339, 458, 601, 686
ApoI	RAATTY	1 cut(s)	433
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	3 cut(s)	29, 165, 182
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	2 cut(s)	31, 58
AvaI	CYCGRG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	5 cut(s)	23, 326, 470, 588, 698
BccI	CCATC	2 cut(s)	130, 377
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	2 cut(s)	291, 292
BcoDI	GTCTC	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	109
BfuAI	ACCTGC	2 cut(s)	282, 497
BisI	GCNGC	6 cut(s)	12, 313, 340, 459, 602, 687
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	6 cut(s)	13, 314, 341, 460, 603, 688
Bme1390I	CCNGG	3 cut(s)	212, 291, 292
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	5 cut(s)	216, 222, 288, 296, 441
BmrFI	CCNGG	3 cut(s)	212, 291, 292
BmsI	GCATC	3 cut(s)	324, 486, 520
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	291, 292
BsaJI	CCNNGG	3 cut(s)	6, 210, 290
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 416
Bse118I	RCCGGY	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	681
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	6, 210, 290
BseGI	GGATG	2 cut(s)	122, 388
BseLI	CCNNNNNNNGG	2 cut(s)	217, 416
BseMI	GCAATG	1 cut(s)	681
BseRI	GAGGAG	2 cut(s)	22, 123
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	23, 326, 470, 588, 698
BsgI	GTGCAG	2 cut(s)	260, 477
Bsh1236I	CGCG	2 cut(s)	163, 188
BshFI	GGCC	3 cut(s)	5, 169, 587
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	218, 280, 291, 410
BslI	CCNNNNNNNGG	2 cut(s)	217, 416
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	5, 169, 587
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	194, 264, 291
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	439
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	7 cut(s)	45, 70, 96, 186, 225, 312, 566
BspANI	GGCC	3 cut(s)	5, 169, 587
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	163, 188
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	5 cut(s)	216, 222, 288, 296, 441
BspMI	ACCTGC	2 cut(s)	282, 497
BspPI	GGATC	2 cut(s)	434, 447
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	6, 210, 290
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	4 cut(s)	113, 374, 662, 697
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	25, 167, 190, 566
BstDEI	CTNAG	4 cut(s)	444, 526, 592, 597
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	122, 388
BstFNI	CGCG	2 cut(s)	163, 188
BstHHI	GCGC	3 cut(s)	29, 165, 182
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 593
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	210, 289, 290
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	163, 188
BstV1I	GCAGC	5 cut(s)	23, 326, 470, 588, 698
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	5, 169, 587
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	122, 388
BtsIMutI	CAGTG	2 cut(s)	370, 702
BveI	ACCTGC	2 cut(s)	282, 497
Cac8I	GCNNGC	4 cut(s)	25, 167, 190, 566
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	3 cut(s)	29, 165, 182
Cfr10I	RCCGGY	1 cut(s)	279
Cfr9I	CCCGGG	1 cut(s)	290
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	7, 647
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	444, 526, 592, 597
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DraIII	CACNNNGTG	2 cut(s)	376, 697
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 650
FaiI	YATR	6 cut(s)	8, 323, 513, 581, 648, 710
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	2 cut(s)	6, 646
FauI	CCCGC	4 cut(s)	77, 103, 232, 573
Fnu4HI	GCNGC	6 cut(s)	12, 313, 340, 459, 602, 687
FokI	GGATG	2 cut(s)	109, 395
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	6 cut(s)	12, 313, 340, 459, 602, 687
GlaI	GCGC	3 cut(s)	28, 164, 181
GluI	GCNGC	6 cut(s)	12, 313, 340, 459, 602, 687
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	5, 169, 587
HapII	CCGG	4 cut(s)	218, 280, 291, 410
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	3 cut(s)	29, 165, 182
Hin1II	CATG	2 cut(s)	10, 650
Hin6I	GCGC	3 cut(s)	27, 163, 180
HinP1I	GCGC	3 cut(s)	27, 163, 180
HinfI	GANTC	3 cut(s)	130, 541, 628
HpaII	CCGG	4 cut(s)	218, 280, 291, 410
HphI	GGTGA	2 cut(s)	31, 58
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	5 cut(s)	146, 303, 355, 432, 439
Hpy188III	TCNNGA	2 cut(s)	410, 647
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	2 cut(s)	163, 359
HpyAV	CCTTC	3 cut(s)	208, 577, 646
HpyCH4III	ACNGT	4 cut(s)	113, 374, 662, 697
HpyCH4V	TGCA	4 cut(s)	277, 458, 499, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 593
HpyF3I	CTNAG	4 cut(s)	444, 526, 592, 597
Hsp92II	CATG	2 cut(s)	10, 650
HspAI	GCGC	3 cut(s)	27, 163, 180
Kpn2I	TCCGGA	1 cut(s)	409
KpnI	GGTACC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	3 cut(s)	226, 286, 608
Lsp1109I	GCAGC	5 cut(s)	23, 326, 470, 588, 698
LweI	GCATC	3 cut(s)	324, 486, 520
MalI	GATC	1 cut(s)	441
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	439
MboII	GAAGA	4 cut(s)	68, 107, 536, 695
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	3 cut(s)	194, 264, 291
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	433, 557
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	378
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	218, 280, 291, 410
MspR9I	CCNGG	3 cut(s)	212, 291, 292
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	163, 188
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 593
NciI	CCSGG	2 cut(s)	291, 292
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	10, 650
NlaIV	GGNNCC	5 cut(s)	216, 222, 288, 296, 441
PagI	TCATGA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	541, 628
PkrI	GCNGC	6 cut(s)	13, 314, 341, 460, 603, 688
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	5 cut(s)	216, 222, 288, 296, 441
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	6 cut(s)	12, 313, 340, 459, 602, 687
Sau3AI	GATC	1 cut(s)	439
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	212, 291, 292
SduI	GDGCHC	3 cut(s)	194, 264, 291
SfaNI	GCATC	3 cut(s)	324, 486, 520
SfcI	CTRYAG	1 cut(s)	109
SmaI	CCCGGG	1 cut(s)	292
Sse9I	AATT	2 cut(s)	433, 557
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	7 cut(s)	45, 70, 96, 186, 225, 312, 566
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	3 cut(s)	210, 289, 290
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	4 cut(s)	113, 374, 662, 697
TaqI	TCGA	3 cut(s)	201, 270, 318
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	2 cut(s)	433, 557
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	541, 628
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	377, 702
TseI	GCWGC	5 cut(s)	11, 339, 458, 601, 686
TspDTI	ATGAA	2 cut(s)	463, 596
TspGWI	ACGGA	2 cut(s)	222, 610
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	2 cut(s)	377, 702
XapI	RAATTY	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.