Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Forward (+)

13962940 .. 13968896

Gene Structure 5957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGCCGCATCCCTCTCCGCCTCTTCAGTCGCCGCCACAACAACCAAATCACTCCCTCACTCTCTTTTCCTCTCCAATCTCCATCACACCTCTTCTTCTCCATCTCTCCGATTACCGGAAACCCGGCCCAGAACCAAACCCCTAGTTTGGGCCTCCGCAGGCACGGCCCTCGAGGTCGACCAAGCCCAAACCTCGGCCACCCCCTCCAAGACCTTGCCTTTCCGGGTCGGGCACGGCTTCGACCTCCACCGATTGGAGCCCGGCTACCCTCTGATCATCGGCGGCATCGACATCCCTCACGATAGAGGCTGCGAGGCTCACTCCGATGGGGATGTGTTGCTTCACTGTGTGGTGGATGCTATACTGGGAGCATTGGGCCTCCCGGATATCGGGCAGATATTCCCGGATTCGGATCCCAAGTGGCGCGGTGCGGCTTCCTCTGTCTTCATCAAAGAAGCTGTGAAATTGATGCATGAGGCAGGTTATGAAATTGGAAATTTAGACGCTACCTTGATTCTTCAAAGACCGAAATTGAGCCCACATAAGGAGGTTATGAGGGCCAACTTGGCTAAGCTGCTTGGTGCAGACCCATCTGTTGTGAATCTGAAAGCCAAGACTCATGAGAAGGTCGACAGCCTAGGAGAAAATCGTAGCATTGCAGCTCACACAGTGGTTCTTCTTATGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

231

Amino Acids

24.68

Weight (kDa)

7.89

Isoelectric Point (pI)

27.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	75 - 228	8.2e-62	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccI	GTMKAC	2 cut(s)	180, 633
AccII	CGCG	1 cut(s)	429
AciI	CCGC	8 cut(s)	5, 9, 21, 36, 159, 285, 429, 434
AclWI	GGATC	2 cut(s)	410, 423
AcoI	YGGCCR	2 cut(s)	6, 198
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	12
AdeI	CACNNNGTG	2 cut(s)	352, 673
AfiI	CCNNNNNNNGG	8 cut(s)	118, 150, 151, 196, 256, 392, 412, 547
AgsI	TTSAA	1 cut(s)	524
AluBI	AGCT	3 cut(s)	461, 577, 665
AluI	AGCT	3 cut(s)	461, 577, 665
AlwI	GGATC	2 cut(s)	410, 423
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	7 cut(s)	6, 128, 153, 168, 198, 379, 561
ApeKI	GCWGC	3 cut(s)	312, 577, 662
ApoI	RAATTY	1 cut(s)	499
AspA2I	CCTAGG	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	5 cut(s)	129, 153, 169, 379, 561
AsuC2I	CCSGG	5 cut(s)	127, 227, 264, 386, 407
AvaI	CYCGRG	1 cut(s)	173
AvrII	CCTAGG	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	415
BanII	GRGCYC	2 cut(s)	264, 542
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	3 cut(s)	299, 564, 674
BccI	CCATC	4 cut(s)	93, 112, 323, 601
BceAI	ACGGC	2 cut(s)	183, 253
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	5 cut(s)	127, 227, 264, 386, 407
BfaI	CTAG	2 cut(s)	146, 641
BfuAI	ACCTGC	1 cut(s)	473
BglI	GCCNNNNNGGC	1 cut(s)	569
BisI	GCNGC	8 cut(s)	6, 9, 36, 286, 313, 435, 578, 663
BlnI	CCTAGG	1 cut(s)	640
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	8 cut(s)	7, 10, 37, 287, 314, 436, 579, 664
Bme1390I	CCNGG	5 cut(s)	127, 227, 264, 386, 407
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	129, 153, 169, 379, 561
BmiI	GGNNCC	2 cut(s)	261, 417
BmrFI	CCNGG	5 cut(s)	127, 227, 264, 386, 407
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	4 cut(s)	20, 297, 349, 462
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu1102I	GCTNAGC	1 cut(s)	573
BpuMI	CCSGG	5 cut(s)	127, 227, 264, 386, 407
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	195, 640
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 150, 151, 196, 256, 392, 412, 547
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	195, 640
BseGI	GGATG	4 cut(s)	11, 294, 340, 364
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	8 cut(s)	118, 150, 151, 196, 256, 392, 412, 547
BseMI	GCAATG	1 cut(s)	657
BseNI	ACTGG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	299, 564, 674
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	7 cut(s)	8, 130, 155, 170, 200, 381, 563
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	6 cut(s)	119, 127, 226, 264, 386, 407
BslI	CCNNNNNNNGG	8 cut(s)	118, 150, 151, 196, 256, 392, 412, 547
BsnI	GGCC	7 cut(s)	8, 130, 155, 170, 200, 381, 563
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	237, 264, 542
Bsp143I	GATC	2 cut(s)	276, 415
Bsp1720I	GCTNAGC	1 cut(s)	573
BspACI	CCGC	8 cut(s)	5, 9, 21, 36, 159, 285, 429, 434
BspANI	GGCC	7 cut(s)	8, 130, 155, 170, 200, 381, 563
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	261, 417
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	410, 423
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	195, 640
BssMI	GATC	2 cut(s)	276, 415
BssT1I	CCWWGG	1 cut(s)	640
Bst4CI	ACNGT	2 cut(s)	350, 673
Bst6I	CTCTTC	2 cut(s)	31, 100
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	11, 294, 340, 364
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	279, 418
BstMBI	GATC	2 cut(s)	276, 415
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 569
BstSCI	CCNGG	5 cut(s)	125, 225, 262, 384, 405
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	299, 564, 674
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	7 cut(s)	8, 130, 155, 170, 200, 381, 563
BtsCI	GGATG	4 cut(s)	11, 294, 340, 364
BtsIMutI	CAGTG	2 cut(s)	346, 678
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	163
CciI	TCATGA	1 cut(s)	622
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	5 cut(s)	129, 153, 169, 379, 561
CseI	GACGC	1 cut(s)	515
CviAII	CATG	2 cut(s)	476, 623
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	2 cut(s)	278, 417
DpnII	GATC	2 cut(s)	276, 415
DraIII	CACNNNGTG	2 cut(s)	352, 673
EaeI	YGGCCR	2 cut(s)	6, 198
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	31, 100
EarI	CTCTTC	2 cut(s)	31, 100
EciI	GGCGGA	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	640
Eco24I	GRGCYC	2 cut(s)	264, 542
Eco32I	GATATC	1 cut(s)	391
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	2 cut(s)	264, 542
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	2 cut(s)	479, 626
FaiI	YATR	7 cut(s)	365, 477, 489, 546, 557, 624, 686
FatI	CATG	2 cut(s)	475, 622
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	180, 633
Fnu4HI	GCNGC	8 cut(s)	6, 9, 36, 286, 313, 435, 578, 663
FokI	GGATG	3 cut(s)	281, 347, 371
FriOI	GRGCYC	2 cut(s)	264, 542
Fsp4HI	GCNGC	8 cut(s)	6, 9, 36, 286, 313, 435, 578, 663
FspBI	CTAG	2 cut(s)	146, 641
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	8 cut(s)	6, 9, 36, 286, 313, 435, 578, 663
HaeIII	GGCC	7 cut(s)	8, 130, 155, 170, 200, 381, 563
HapII	CCGG	6 cut(s)	119, 127, 226, 264, 386, 407
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	479, 626
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	2 cut(s)	181, 634
HindII	GTYRAC	2 cut(s)	181, 634
HinfI	GANTC	4 cut(s)	410, 517, 604, 619
HpaII	CCGG	6 cut(s)	119, 127, 226, 264, 386, 407
Hpy166II	GTNNAC	2 cut(s)	181, 634
Hpy188I	TCNGA	5 cut(s)	113, 276, 328, 415, 609
Hpy188III	TCNNGA	2 cut(s)	302, 623
Hpy8I	GTNNAC	2 cut(s)	181, 634
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	2 cut(s)	350, 673
HpyCH4V	TGCA	3 cut(s)	475, 587, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 569
HpyF3I	CTNAG	1 cut(s)	573
Hsp92II	CATG	2 cut(s)	479, 626
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	276, 415
LmnI	GCTCC	2 cut(s)	259, 371
Lsp1109I	GCAGC	3 cut(s)	299, 564, 674
LweI	GCATC	4 cut(s)	20, 297, 349, 462
MaeI	CTAG	2 cut(s)	146, 641
MalI	GATC	2 cut(s)	278, 417
MboI	GATC	2 cut(s)	276, 415
MboII	GAAGA	6 cut(s)	18, 87, 90, 439, 512, 671
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	237, 264, 542
MluCI	AATT	4 cut(s)	467, 492, 499, 533
MlyI	GAGTC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	6 cut(s)	119, 127, 226, 264, 386, 407
MspR9I	CCNGG	5 cut(s)	127, 227, 264, 386, 407
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	167, 569
NciI	CCSGG	5 cut(s)	127, 227, 264, 386, 407
NdeII	GATC	2 cut(s)	276, 415
NlaIII	CATG	2 cut(s)	479, 626
NlaIV	GGNNCC	2 cut(s)	261, 417
NmeAIII	GCCGAG	1 cut(s)	176
NotI	GCGGCCGC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	410, 517, 604
PflMI	CCANNNNNTGG	1 cut(s)	256
PfoI	TCCNGGA	2 cut(s)	384, 405
PkrI	GCNGC	8 cut(s)	7, 10, 37, 287, 314, 436, 579, 664
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	261, 417
PspPI	GGNCC	5 cut(s)	129, 153, 169, 379, 561
PspXI	VCTCGAGB	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	327
SalI	GTCGAC	2 cut(s)	179, 632
SatI	GCNGC	8 cut(s)	6, 9, 36, 286, 313, 435, 578, 663
Sau3AI	GATC	2 cut(s)	276, 415
Sau96I	GGNCC	5 cut(s)	129, 153, 169, 379, 561
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	5 cut(s)	127, 227, 264, 386, 407
SduI	GDGCHC	3 cut(s)	237, 264, 542
SfaNI	GCATC	4 cut(s)	20, 297, 349, 462
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	467, 492, 499, 533
SsiI	CCGC	8 cut(s)	5, 9, 21, 36, 159, 285, 429, 434
SspMI	CTAG	2 cut(s)	146, 641
StyD4I	CCNGG	5 cut(s)	125, 225, 262, 384, 405
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	2 cut(s)	350, 673
TaqI	TCGA	5 cut(s)	174, 180, 243, 291, 633
TaqII	GACCGA	1 cut(s)	544
TasI	AATT	4 cut(s)	467, 492, 499, 533
TauI	GCSGC	5 cut(s)	8, 11, 38, 288, 437
TfiI	GAWTC	3 cut(s)	410, 517, 604
TscAI	CASTG	2 cut(s)	353, 678
TseI	GCWGC	3 cut(s)	312, 577, 662
TspDTI	ATGAA	2 cut(s)	439, 504
TspRI	CASTG	2 cut(s)	353, 678
Van91I	CCANNNNNTGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	640
XmiI	GTMKAC	2 cut(s)	180, 633
XspI	CTAG	2 cut(s)	146, 641
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.