Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

11248417 .. 11250684

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCATGGCAGCCACACCCGTCTACGCCTCTTCAATCGCCACCACCACTGCCACAACAACCAAACCACTCTCTCGTTCTCTTCCTCGCTCGAACCTGCCAGCTCCAAACCCCTACAGTCTTCGAACCCCATCTTCTCTATCTCTCCGAGCCGCCCAAACGACGCGCAGGCCCGTCGTTTTTGCCTCCGCCAGCACGGCCTTCGAGGTTGACCAAGCCCCAGCTTCCGCCGCTGCCTCCAAGTTCTTGCCTTTTCGGGTCGGACACGGGTTCGACCTGCACCGGTTGGAGCCCGGTTACCCTTTGATCATCGGCGGCATTAACATACCTCACGACAAAGGCTGCGAGGCTCATTCCGATGGGGACGTGTTGCTTCATTGTGTGGTGGATGCGATATTGGGGGCTCTGGGCCTTCCGGATATTGGGCAGATATTTCCGGATTCGGATCCTAAGTGGCGCGGTGCAGATTCCTCTGTTTTCATCAGAGAAGCTGTGAGATTGATGCATGAGGCAGGGTATGAGATTGGAAATTTAGATGCTACTTTGATTCTTCAAAGACCAAAACTGAGCCCACATAAGGAGACTATGAGGGCCAACTTGGCTAAGCTGCTTGGAGCAGACCCCTCTGTTGTGAATCTCAAAGCTAAAACTCATGAGAAGGTGGACAGCCTTGGGGAAAATCGAAGTATTGCTGCTCACACTGTGGTTCTTCTTATGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

242

Amino Acids

25.78

Weight (kDa)

9.14

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	105, 285
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	2 cut(s)	166, 459
AccIII	TCCGGA	2 cut(s)	415, 436
AciI	CCGC	6 cut(s)	153, 189, 228, 231, 315, 459
AclWI	GGATC	2 cut(s)	440, 453
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	529
AdeI	CACNNNGTG	1 cut(s)	703
AfiI	CCNNNNNNNGG	2 cut(s)	422, 577
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	36, 554
AjiI	CACGTC	1 cut(s)	367
AluBI	AGCT	5 cut(s)	104, 224, 491, 607, 644
AluI	AGCT	5 cut(s)	104, 224, 491, 607, 644
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	2 cut(s)	440, 453
Aor13HI	TCCGGA	2 cut(s)	415, 436
AoxI	GGCC	5 cut(s)	3, 170, 198, 409, 591
ApeKI	GCWGC	5 cut(s)	11, 233, 342, 607, 692
ApoI	RAATTY	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	168, 459
AspS9I	GGNCC	3 cut(s)	171, 409, 591
AsuC2I	CCSGG	1 cut(s)	294
AsuII	TTCGAA	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	3 cut(s)	294, 406, 572
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	23, 220, 329, 594, 679
BccI	CCATC	2 cut(s)	139, 353
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	4 cut(s)	157, 184, 191, 218
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	115
BfuAI	ACCTGC	2 cut(s)	105, 285
BglI	GCCNNNNNGGC	2 cut(s)	197, 599
BisI	GCNGC	8 cut(s)	12, 153, 231, 234, 316, 343, 608, 693
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	8 cut(s)	13, 154, 232, 235, 317, 344, 609, 694
Bme1390I	CCNGG	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	171, 409, 591
BmiI	GGNNCC	2 cut(s)	291, 447
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	379, 492, 526
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	6, 670
BsaWI	WCCGGW	3 cut(s)	282, 415, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 577
Bse118I	RCCGGY	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	2 cut(s)	415, 436
BseDI	CCNNGG	2 cut(s)	6, 670
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	422, 577
BseMII	CTCAG	1 cut(s)	557
BseXI	GCAGC	5 cut(s)	23, 220, 329, 594, 679
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	2 cut(s)	263, 483
Bsh1236I	CGCG	2 cut(s)	166, 459
BshFI	GGCC	5 cut(s)	5, 172, 200, 411, 593
BshTI	ACCGGT	1 cut(s)	282
BsiSI	CCGG	4 cut(s)	283, 294, 416, 437
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	422, 577
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	5, 172, 200, 411, 593
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	294, 406, 572
Bsp13I	TCCGGA	2 cut(s)	415, 436
Bsp143I	GATC	2 cut(s)	306, 445
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	153, 189, 228, 231, 315, 459
BspANI	GGCC	5 cut(s)	5, 172, 200, 411, 593
BspCNI	CTCAG	1 cut(s)	558
BspEI	TCCGGA	2 cut(s)	415, 436
BspFNI	CGCG	2 cut(s)	166, 459
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	291, 447
BspMI	ACCTGC	2 cut(s)	105, 285
BspPI	GGATC	2 cut(s)	440, 453
BspT104I	TTCGAA	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	6, 670
BssMI	GATC	2 cut(s)	306, 445
BssT1I	CCWWGG	2 cut(s)	6, 670
Bst4CI	ACNGT	2 cut(s)	119, 703
Bst6I	CTCTTC	2 cut(s)	37, 87
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	102, 170, 193
BstDEI	CTNAG	3 cut(s)	450, 566, 603
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	2 cut(s)	166, 459
BstHHI	GCGC	2 cut(s)	168, 459
BstKTI	GATC	2 cut(s)	309, 448
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	2 cut(s)	306, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 197, 230, 599
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	2 cut(s)	166, 459
BstV1I	GCAGC	5 cut(s)	23, 220, 329, 594, 679
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	5 cut(s)	5, 172, 200, 411, 593
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 699
BveI	ACCTGC	2 cut(s)	105, 285
Cac8I	GCNNGC	3 cut(s)	102, 170, 193
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	2 cut(s)	168, 459
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	3 cut(s)	171, 409, 591
CseI	GACGC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	3 cut(s)	7, 506, 653
DdeI	CTNAG	3 cut(s)	450, 566, 603
DpnI	GATC	2 cut(s)	308, 447
DpnII	GATC	2 cut(s)	306, 445
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	37, 87
EarI	CTCTTC	2 cut(s)	37, 87
EciI	GGCGGA	2 cut(s)	178, 217
Eco130I	CCWWGG	2 cut(s)	6, 670
Eco24I	GRGCYC	3 cut(s)	294, 406, 572
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoT14I	CCWWGG	2 cut(s)	6, 670
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	3 cut(s)	294, 406, 572
ErhI	CCWWGG	2 cut(s)	6, 670
FaeI	CATG	3 cut(s)	10, 509, 656
FaiI	YATR	8 cut(s)	8, 326, 507, 519, 576, 587, 654, 716
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	3 cut(s)	6, 505, 652
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	8 cut(s)	12, 153, 231, 234, 316, 343, 608, 693
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	3 cut(s)	294, 406, 572
Fsp4HI	GCNGC	8 cut(s)	12, 153, 231, 234, 316, 343, 608, 693
GlaI	GCGC	2 cut(s)	167, 458
GluI	GCNGC	8 cut(s)	12, 153, 231, 234, 316, 343, 608, 693
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	5 cut(s)	5, 172, 200, 411, 593
HapII	CCGG	4 cut(s)	283, 294, 416, 437
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	168, 459
Hin1II	CATG	3 cut(s)	10, 509, 656
Hin6I	GCGC	2 cut(s)	166, 457
HinP1I	GCGC	2 cut(s)	166, 457
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	440, 467, 547, 634
HpaII	CCGG	4 cut(s)	283, 294, 416, 437
Hpy166II	GTNNAC	3 cut(s)	25, 211, 664
Hpy188I	TCNGA	5 cut(s)	149, 263, 358, 445, 485
Hpy188III	TCNNGA	4 cut(s)	332, 416, 437, 653
Hpy8I	GTNNAC	3 cut(s)	25, 211, 664
Hpy99I	CGWCG	2 cut(s)	166, 179
HpyAV	CCTTC	3 cut(s)	211, 422, 652
HpyCH4III	ACNGT	2 cut(s)	119, 703
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	280, 464, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 197, 230, 599
HpyF3I	CTNAG	3 cut(s)	450, 566, 603
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	10, 509, 656
HspAI	GCGC	2 cut(s)	166, 457
Kpn2I	TCCGGA	2 cut(s)	415, 436
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	306, 445
LmnI	GCTCC	3 cut(s)	109, 289, 614
Lsp1109I	GCAGC	5 cut(s)	23, 220, 329, 594, 679
LweI	GCATC	3 cut(s)	379, 492, 526
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	308, 447
MboI	GATC	2 cut(s)	306, 445
MboII	GAAGA	6 cut(s)	24, 74, 113, 126, 542, 701
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	3 cut(s)	294, 406, 572
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	529
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	241, 267
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	507
MroI	TCCGGA	2 cut(s)	415, 436
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	4 cut(s)	283, 294, 416, 437
MspR9I	CCNGG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	166, 459
MwoI	GCNNNNNNNGC	4 cut(s)	11, 197, 230, 599
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	306, 445
NlaIII	CATG	3 cut(s)	10, 509, 656
NlaIV	GGNNCC	2 cut(s)	291, 447
NsiI	ATGCAT	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	124
PagI	TCATGA	1 cut(s)	652
PfeI	GAWTC	4 cut(s)	440, 467, 547, 634
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	8 cut(s)	13, 154, 232, 235, 317, 344, 609, 694
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	291, 447
PspPI	GGNCC	3 cut(s)	171, 409, 591
PsuI	RGATCY	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	8 cut(s)	12, 153, 231, 234, 316, 343, 608, 693
Sau3AI	GATC	2 cut(s)	306, 445
Sau96I	GGNCC	3 cut(s)	171, 409, 591
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	3 cut(s)	294, 406, 572
SfaNI	GCATC	3 cut(s)	379, 492, 526
SfcI	CTRYAG	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	529
SsiI	CCGC	6 cut(s)	153, 189, 228, 231, 315, 459
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	6, 670
TaaI	ACNGT	2 cut(s)	119, 703
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	92, 124, 204, 273, 682
TasI	AATT	1 cut(s)	529
TauI	GCSGC	3 cut(s)	155, 233, 318
TfiI	GAWTC	4 cut(s)	440, 467, 547, 634
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	55, 706
TseI	GCWGC	5 cut(s)	11, 233, 342, 607, 692
TspDTI	ATGAA	2 cut(s)	365, 469
TspRI	CASTG	2 cut(s)	55, 706
XapI	RAATTY	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.