Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

17960082 .. 17962212

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1111600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGATGCTCCTGTTTGGTGAACTTGAACTCAGCCATACGCCCAACACTAACAGAAACCAGATACACCACAACGCCGTCGTATCGAGTCCTGTGCCAGAGCTTCAACCTTCAGCTATGGCCATGGCAGCTACTCCGGCGTGCGCCTCCTCAATCACTACCGCCACAATCACCAAGCCACTCTCCCGCTCTCTTCCTTGCTCCCACCTCCCCGCCCTAAACCCATACTATCTTCGACCCTCGGCCCCTCTGTCTCTCCGAGCCCCCAAAACGCCACGCAGGCCAGTCTTTTGCTCCTCTGCCAGCACGGCCTTCGAGGTCGACCAAGCTCCGGCTTCCGCCACTCCGTCCAAGCTCTTGCCTTTTCGGGTCGGGCACGGGTTCGACCTGCACAGGCTGGAGCCCGGGTACCCTCTGATCATCGGCGGCATCGACATACCTCACGACAGAGGCTGCGAGGCGCATTCCGACGGGGATGTGTTGCTTCATTGTGTGGTGGATGCGATATTGGGGGCTTTGGGGCTTCCGGATATCGGGCAGATATTTCCCGATTCGGATCCGAAGTGGAGGGGTGCAGCTTCATCTGTGTTCATCAAAGAAGCTGTGAGATTGATGCACGAGGCAGGTTATGAGATTGGAAACTTAGATGCTACTTTGATTCTTCAAAGACCGAAATTGAGCCCACACAAAGAGGTTATGAGGGCCAACTTGGCTAAGCTGCTTGGAGCAGACCCCTCCGTTGTGAATCTCAAAGCTAAAACTCATGAGAAGGTGGACAGTCTTGGCGAAAACCGAAGTATTGCAGCTCACACGGTGGTTCTTCTTATGAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

279

Amino Acids

29.92

Weight (kDa)

8.59

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	122 - 275	1.6e-61	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	396, 614
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	5 cut(s)	162, 187, 213, 339, 426
AclWI	GGATC	2 cut(s)	551, 564
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	331, 533
AgsI	TTSAA	3 cut(s)	29, 107, 665
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	551, 564
AlwNI	CAGNNNCTG	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	5 cut(s)	120, 243, 281, 309, 702
ApeKI	GCWGC	5 cut(s)	128, 453, 575, 718, 803
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	146, 463
AspS9I	GGNCC	2 cut(s)	244, 702
AsuC2I	CCSGG	2 cut(s)	405, 406
AsuHPI	GGTGA	2 cut(s)	32, 163
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	3 cut(s)	265, 405, 683
BauI	CACGAG	1 cut(s)	617
BbvI	GCAGC	5 cut(s)	140, 440, 587, 705, 815
BceAI	ACGGC	2 cut(s)	62, 324
BcgI	CGANNNNNNTGC	4 cut(s)	76, 110, 295, 329
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	405, 406
BcoDI	GTCTC	1 cut(s)	258
BfuAI	ACCTGC	2 cut(s)	396, 614
BglI	GCCNNNNNGGC	3 cut(s)	280, 308, 710
BisI	GCNGC	6 cut(s)	129, 427, 454, 576, 719, 804
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	6 cut(s)	130, 428, 455, 577, 720, 805
Bme1390I	CCNGG	2 cut(s)	405, 406
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	244, 702
BmiI	GGNNCC	4 cut(s)	246, 402, 410, 558
BmrFI	CCNGG	2 cut(s)	405, 406
BmsI	GCATC	4 cut(s)	438, 490, 603, 637
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	405, 406
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	123, 240, 404
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 533
Bse1I	ACTGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	526
BseDI	CCNNGG	3 cut(s)	123, 240, 404
BseGI	GGATG	2 cut(s)	481, 505
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	331, 533
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	139, 286
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	5 cut(s)	140, 440, 587, 705, 815
BsgI	GTGCAG	2 cut(s)	374, 594
BshFI	GGCC	5 cut(s)	122, 245, 283, 311, 704
BshNI	GGYRCC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	4 cut(s)	137, 332, 405, 527
BslI	CCNNNNNNNGG	2 cut(s)	331, 533
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	5 cut(s)	122, 245, 283, 311, 704
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	4 cut(s)	265, 378, 405, 683
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	417, 556
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	5 cut(s)	162, 187, 213, 339, 426
BspANI	GGCC	5 cut(s)	122, 245, 283, 311, 704
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	4 cut(s)	246, 402, 410, 558
BspMI	ACCTGC	2 cut(s)	396, 614
BspPI	GGATC	2 cut(s)	551, 564
BspT107I	GGYRCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	123, 240, 404
BssMI	GATC	2 cut(s)	417, 556
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	779, 814
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	142, 281, 304
BstDEI	CTNAG	3 cut(s)	32, 643, 714
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	481, 505
BstHHI	GCGC	2 cut(s)	146, 463
BstKTI	GATC	2 cut(s)	420, 559
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	417, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 137, 280, 308, 710
BstSCI	CCNGG	2 cut(s)	403, 404
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	140, 440, 587, 705, 815
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	5 cut(s)	122, 245, 283, 311, 704
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	481, 505
BveI	ACCTGC	2 cut(s)	396, 614
Cac8I	GCNNGC	3 cut(s)	142, 281, 304
CaiI	CAGNNNCTG	1 cut(s)	453
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	2 cut(s)	146, 463
Cfr13I	GGNCC	2 cut(s)	244, 702
Cfr9I	CCCGGG	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	124, 764
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	32, 643, 714
DpnI	GATC	2 cut(s)	419, 558
DpnII	GATC	2 cut(s)	417, 556
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	3 cut(s)	265, 405, 683
Eco32I	GATATC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	3 cut(s)	265, 405, 683
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	127, 767
FaiI	YATR	9 cut(s)	39, 119, 125, 226, 437, 630, 698, 765, 827
FatI	CATG	2 cut(s)	123, 763
FauI	CCCGC	2 cut(s)	194, 220
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	6 cut(s)	129, 427, 454, 576, 719, 804
FokI	GGATG	2 cut(s)	488, 512
FriOI	GRGCYC	3 cut(s)	265, 405, 683
Fsp4HI	GCNGC	6 cut(s)	129, 427, 454, 576, 719, 804
GlaI	GCGC	2 cut(s)	145, 462
GluI	GCNGC	6 cut(s)	129, 427, 454, 576, 719, 804
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	5 cut(s)	122, 245, 283, 311, 704
HapII	CCGG	4 cut(s)	137, 332, 405, 527
HhaI	GCGC	2 cut(s)	146, 463
Hin1II	CATG	2 cut(s)	127, 767
Hin6I	GCGC	2 cut(s)	144, 461
HinP1I	GCGC	2 cut(s)	144, 461
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	88, 551, 658, 745
HpaII	CCGG	4 cut(s)	137, 332, 405, 527
HphI	GGTGA	2 cut(s)	32, 163
Hpy166II	GTNNAC	3 cut(s)	23, 322, 775
Hpy188I	TCNGA	5 cut(s)	260, 417, 469, 556, 561
Hpy188III	TCNNGA	4 cut(s)	443, 527, 548, 764
Hpy8I	GTNNAC	3 cut(s)	23, 322, 775
Hpy99I	CGWCG	2 cut(s)	83, 473
HpyAV	CCTTC	3 cut(s)	120, 322, 763
HpyCH4III	ACNGT	2 cut(s)	779, 814
HpyCH4V	TGCA	4 cut(s)	391, 575, 616, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 137, 280, 308, 710
HpyF3I	CTNAG	3 cut(s)	32, 643, 714
Hsp92II	CATG	2 cut(s)	127, 767
HspAI	GCGC	2 cut(s)	144, 461
Kpn2I	TCCGGA	1 cut(s)	526
KpnI	GGTACC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	417, 556
LmnI	GCTCC	6 cut(s)	15, 206, 299, 334, 400, 725
Lsp1109I	GCAGC	5 cut(s)	140, 440, 587, 705, 815
LweI	GCATC	4 cut(s)	438, 490, 603, 637
MalI	GATC	2 cut(s)	419, 558
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	417, 556
MboII	GAAGA	5 cut(s)	16, 185, 224, 653, 812
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	4 cut(s)	265, 378, 405, 683
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	674
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	492
Mox20I	TGGCCA	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	4 cut(s)	137, 332, 405, 527
MspR9I	CCNGG	2 cut(s)	405, 406
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	5 cut(s)	128, 137, 280, 308, 710
NciI	CCSGG	2 cut(s)	405, 406
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	417, 556
NlaIII	CATG	2 cut(s)	127, 767
NlaIV	GGNNCC	4 cut(s)	246, 402, 410, 558
NmeAIII	GCCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	763
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	551, 658, 745
PkrI	GCNGC	6 cut(s)	130, 428, 455, 577, 720, 805
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	246, 402, 410, 558
PspPI	GGNCC	2 cut(s)	244, 702
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SalI	GTCGAC	1 cut(s)	320
SatI	GCNGC	6 cut(s)	129, 427, 454, 576, 719, 804
Sau3AI	GATC	2 cut(s)	417, 556
Sau96I	GGNCC	2 cut(s)	244, 702
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	405, 406
SduI	GDGCHC	4 cut(s)	265, 378, 405, 683
SfaNI	GCATC	4 cut(s)	438, 490, 603, 637
SmaI	CCCGGG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	674
SsiI	CCGC	5 cut(s)	162, 187, 213, 339, 426
StyD4I	CCNGG	2 cut(s)	403, 404
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	779, 814
TaqI	TCGA	6 cut(s)	86, 235, 315, 321, 384, 432
TaqII	GACCGA	1 cut(s)	685
TasI	AATT	1 cut(s)	674
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	551, 658, 745
TseI	GCWGC	5 cut(s)	128, 453, 575, 718, 803
TspDTI	ATGAA	4 cut(s)	17, 476, 570, 580
TspGWI	ACGGA	2 cut(s)	336, 727
TspMI	CCCGGG	1 cut(s)	404
XmaI	CCCGGG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.