Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

22259931 .. 22260275

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1092700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCATGGCAGCTACTTCAGCGTGCGCCTCTTCAATCACCACCGCCACAACCACCAAGCCACTCATCCGCTCTCTTCCTTGCTCTCACCTCCCCGCCCTAAACCCCTACAGTCTTCAACCATCCTTGACTCCTATGTCTCTCCGAACCCCGAAAACGACGCGCAGACCTGTATTTTACGCCTCCGCGAGCACGACCTTCGAGGTCGCCCAGGTCCCAACTCCTGTCACTCCGTCCAAGCTCTTGCCTTTTTGGGTCGGGCACGAGTTCGACCTGCACCGGCTAGAGCCTGGGTACCCTCTGATAATCGACGACATCGATATACCCCACAATAAAGGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

115

Amino Acids

12.4

Weight (kDa)

8.56

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	163, 188
AciI	CCGC	4 cut(s)	45, 70, 96, 186
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	36, 119
AjnI	CCWGG	2 cut(s)	210, 289
AluBI	AGCT	2 cut(s)	14, 241
AluI	AGCT	2 cut(s)	14, 241
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	11, 339
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	29, 165
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	31, 80
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	23, 326
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	212, 291
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	284, 343
BfmI	CTRYAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	12, 340
BlsI	GCNGC	2 cut(s)	13, 341
Bme1390I	CCNGG	2 cut(s)	212, 291
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	216, 296
BmrFI	CCNGG	2 cut(s)	212, 291
BpiI	GAAGAC	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	6, 210, 290
Bse118I	RCCGGY	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	212, 291
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	6, 210, 290
BseGI	GGATG	2 cut(s)	66, 122
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	23, 326
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	163, 188
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	194, 264
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	4 cut(s)	45, 70, 96, 186
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	2 cut(s)	163, 188
BspLI	GGNNCC	2 cut(s)	216, 296
BspMI	ACCTGC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	6, 210, 290
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	212, 291
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	37, 81
BstC8I	GCNNGC	2 cut(s)	25, 190
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	66, 122
BstFNI	CGCG	2 cut(s)	163, 188
BstHHI	GCGC	2 cut(s)	29, 165
BstMAI	GTCTC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	2 cut(s)	212, 291
BstSCI	CCNGG	2 cut(s)	210, 289
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	163, 188
BstV1I	GCAGC	2 cut(s)	23, 326
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	66, 122
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	25, 190
CfoI	GCGC	2 cut(s)	29, 165
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	7 cut(s)	5, 14, 61, 241, 283, 289, 339
CviKI_1	RGCY	7 cut(s)	5, 14, 61, 241, 283, 289, 339
CviQI	GTAC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	37, 81
EarI	CTCTTC	2 cut(s)	37, 81
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	210, 289
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 137, 323
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	12, 340
FokI	GGATG	2 cut(s)	53, 109
Fsp4HI	GCNGC	2 cut(s)	12, 340
FspBI	CTAG	2 cut(s)	284, 343
GlaI	GCGC	2 cut(s)	28, 164
GluI	GCNGC	2 cut(s)	12, 340
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	29, 165
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	2 cut(s)	27, 163
HinP1I	GCGC	2 cut(s)	27, 163
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	31, 80
Hpy188I	TCNGA	2 cut(s)	146, 303
Hpy99I	CGWCG	2 cut(s)	163, 314
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	2 cut(s)	27, 163
KpnI	GGTACC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	183, 197, 224, 237, 276, 287, 293, 303
Lsp1109I	GCAGC	2 cut(s)	23, 326
MaeI	CTAG	2 cut(s)	284, 343
MaeIII	GTNAC	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	24, 68, 107
MhlI	GDGCHC	2 cut(s)	194, 264
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	40, 101, 193, 196, 309
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	212, 291
MvaI	CCWGG	2 cut(s)	212, 291
MvnI	CGCG	2 cut(s)	163, 188
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NcoI	CCATGG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	216, 296
NmuCI	GTSAC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	13, 341
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	210, 289
PspGI	CCWGG	2 cut(s)	210, 289
PspN4I	GGNNCC	2 cut(s)	216, 296
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SatI	GCNGC	2 cut(s)	12, 340
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	212, 291
SduI	GDGCHC	2 cut(s)	194, 264
SetI	ASST	8 cut(s)	16, 93, 172, 200, 207, 216, 243, 276
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	214
SsiI	CCGC	4 cut(s)	45, 70, 96, 186
SspMI	CTAG	2 cut(s)	284, 343
StyD4I	CCNGG	2 cut(s)	210, 289
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	201, 270, 309, 318
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	11, 339
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	214
XspI	CTAG	2 cut(s)	284, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.