Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

53574979 .. 53577058

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCATGAGGCAGGTTATGAAATTGGAAATTTAGACGCTACCTTGATTCTTCAAAGACCGAAATTGAGCCCACATAAGGAGGTTATGAGGGCCAACTTGGCTAAGCTGCTTGGTGCAGACCCATCTGTTGTGAATCTGAAAGCCAAGACTCATGAGAAGGTCGACAGCCTAGGGGAAAATCGTAGCATTGCAGCTCACACAGTGGTTCTTCTTATGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

9.52

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	2 - 71	1.9e-20	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccI	GTMKAC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	2 cut(s)	106, 194
AluI	AGCT	2 cut(s)	106, 194
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	106, 191
ApoI	RAATTY	1 cut(s)	28
AspA2I	CCTAGG	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	90
AvrII	CCTAGG	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	93, 203
BccI	CCATC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	2
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	107, 192
BlnI	CCTAGG	1 cut(s)	169
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	2 cut(s)	108, 193
BmgT120I	GGNCC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	93, 203
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	93, 203
BsuRI	GGCC	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	2
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	44
CviAII	CATG	2 cut(s)	5, 152
CviJI	RGCY	7 cut(s)	69, 92, 101, 106, 143, 168, 194
CviKI_1	RGCY	7 cut(s)	69, 92, 101, 106, 143, 168, 194
DdeI	CTNAG	1 cut(s)	102
DraIII	CACNNNGTG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	8, 155
FaiI	YATR	6 cut(s)	6, 18, 75, 86, 153, 215
FatI	CATG	2 cut(s)	4, 151
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	107, 192
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	107, 192
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	107, 192
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	8, 155
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	46, 133, 148
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	4, 116, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	8, 155
Lsp1109I	GCAGC	2 cut(s)	93, 203
MaeI	CTAG	1 cut(s)	170
MboII	GAAGA	2 cut(s)	41, 200
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	21, 28, 62
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	73, 81, 210
Mph1103I	ATGCAT	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	8, 155
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	46, 133
PkrI	GCNGC	2 cut(s)	108, 193
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	161
SatI	GCNGC	2 cut(s)	107, 192
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	6 cut(s)	16, 44, 84, 108, 162, 196
SgeI	CNNG	8 cut(s)	17, 24, 55, 109, 122, 157, 164, 182
Sse9I	AATT	3 cut(s)	21, 28, 62
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	21, 28, 62
TfiI	GAWTC	2 cut(s)	46, 133
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	2 cut(s)	106, 191
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	28
XmaJI	CCTAGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.