Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Forward (+)

19467398 .. 19467841

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1120300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGTAATCACAGGAGCAGACTTGTCGTTTGCGCCTCTGCGAGAACGGCCTTCGAGGTCGACCAAGCTCCAACTTCCGCCACTTCGTCCAATCTTTTGCCTTTTAGGGTTGGGTACGGGTTCGACCGGCACAGGTTGGAGCCCAGGTACCCTCTGATCATCGACGACATCGACTTACTTATGACAGAGGTTGGGATGCGCATTCCGACGGGGCTTTGGGCTTCTGGATATCATGCATATAGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

6.82

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	116, 149
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AoxI	GGCC	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
Asp718I	GGTACC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	35, 201
BanI	GGYRCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	141, 149
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse118I	RCCGGY	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	141, 149
BspT107I	GGYRCC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	35, 201
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	201
CfoI	GCGC	2 cut(s)	35, 201
Cfr10I	RCCGGY	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	115, 148
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	5 cut(s)	50, 68, 142, 214, 221
CviKI_1	RGCY	5 cut(s)	50, 68, 142, 214, 221
CviQI	GTAC	2 cut(s)	115, 148
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	236
FaiI	YATR	4 cut(s)	182, 234, 238, 240
FatI	CATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	144
FspAI	RTGCGCAY	1 cut(s)	200
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	2 cut(s)	34, 200
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	2 cut(s)	35, 201
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	33, 199
HinP1I	GCGC	2 cut(s)	33, 199
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	156, 207
Hpy188III	TCNNGA	2 cut(s)	225, 246
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	2 cut(s)	167, 211
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	2 cut(s)	33, 199
KpnI	GGTACC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	3 cut(s)	15, 73, 139
LpnPI	CCDG	5 cut(s)	118, 130, 140, 157, 210
LweI	GCATC	1 cut(s)	186
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	144
MmeI	TCCRAC	3 cut(s)	95, 117, 230
MnlI	CCTC	4 cut(s)	46, 49, 162, 181
Mph1103I	ATGCAT	1 cut(s)	238
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	141, 149
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	141, 149
RsaI	GTAC	2 cut(s)	116, 149
RsaNI	GTAC	2 cut(s)	115, 148
SalI	GTCGAC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	60, 70, 137, 149, 192
SfaNI	GCATC	1 cut(s)	186
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	143
TaqI	TCGA	5 cut(s)	54, 60, 123, 162, 171
XmiI	GTMKAC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.