Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Forward (+)

12439754 .. 12445708

Gene Structure 5955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGGCCGCATCCCTCTCCGCCTCTTCAGTCGCCGCCACAACAACCAAATCACTCCCTCACTCACTTTTCCTCTCCAATCTCCACACCTCTTCTTCTCCATCTCTCCGATTACCGGAAACCCGGCCCAGAACCAAACCCCTAGTTTGGGCCTCCGCCGGCACGGCCCTCGAGGTCGACCAGGCCCAAACCTCCGCCACCCCCTCCAAGACCTTGCCTTTCCGGGTCGGGCACGGCTTCGACCTCCACCGATTGGAGCCCGGCTACCCTCTGATCATCGGCGGCATCGACATCCCTCACGATAGAGGCTGCGAGGCTCACTCCGATGGGGATGTGTTGCTTCACTGTGTGGTGGATGCTATACTGGGAGCATTGGGCCTCCCGGATATCGGGCAGATATTCCCGGATTCGGATCCCAAGTGGCGCGGTGCGGCTTCCTCTGTCTTCATCAAAGAAGCTGTAAGTAGTCCCTTGTTCTTTTTTCTATCTAATCGAATCAGTTTTGTATACAATTTGTGTCATTGTTGCCCTAATTGTAACAGTTGGGATGATTGGGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

187

Amino Acids

20.13

Weight (kDa)

6.02

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	74 - 155	4.3e-34	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	2 cut(s)	177, 507
AccII	CGCG	1 cut(s)	426
AciI	CCGC	9 cut(s)	5, 9, 21, 36, 156, 195, 282, 426, 431
AclWI	GGATC	2 cut(s)	407, 420
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	349
AfiI	CCNNNNNNNGG	6 cut(s)	115, 147, 148, 253, 389, 409
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
AlwI	GGATC	2 cut(s)	407, 420
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	6 cut(s)	6, 125, 150, 165, 183, 376
ApeKI	GCWGC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	5 cut(s)	126, 150, 166, 184, 376
AsuC2I	CCSGG	5 cut(s)	124, 224, 261, 383, 404
AvaI	CYCGRG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	109, 320
BceAI	ACGGC	2 cut(s)	180, 250
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
BfaI	CTAG	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	6 cut(s)	6, 9, 36, 283, 310, 432
BlsI	GCNGC	6 cut(s)	7, 10, 37, 284, 311, 433
Bme1390I	CCNGG	6 cut(s)	124, 182, 224, 261, 383, 404
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	5 cut(s)	126, 150, 166, 184, 376
BmiI	GGNNCC	2 cut(s)	258, 414
BmrFI	CCNGG	6 cut(s)	124, 182, 224, 261, 383, 404
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	20, 294, 346
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpuMI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
BsaBI	GATNNNNATC	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 147, 148, 253, 389, 409
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	5 cut(s)	11, 291, 337, 361, 553
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	6 cut(s)	115, 147, 148, 253, 389, 409
BseNI	ACTGG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	6 cut(s)	8, 127, 152, 167, 185, 378
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	6 cut(s)	115, 147, 148, 253, 389, 409
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	6 cut(s)	8, 127, 152, 167, 185, 378
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	234, 261
Bsp143I	GATC	2 cut(s)	273, 412
BspACI	CCGC	9 cut(s)	5, 9, 21, 36, 156, 195, 282, 426, 431
BspANI	GGCC	6 cut(s)	8, 127, 152, 167, 185, 378
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	258, 414
BspPI	GGATC	2 cut(s)	407, 420
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	2 cut(s)	273, 412
BssNAI	GTATAC	1 cut(s)	508
Bst1107I	GTATAC	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	347, 542
Bst6I	CTCTTC	2 cut(s)	31, 97
BstC8I	GCNNGC	1 cut(s)	160
BstF5I	GGATG	5 cut(s)	11, 291, 337, 361, 553
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	276, 415
BstMBI	GATC	2 cut(s)	273, 412
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	6 cut(s)	122, 180, 222, 259, 381, 402
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	6 cut(s)	8, 127, 152, 167, 185, 378
BtsCI	GGATG	5 cut(s)	11, 291, 337, 361, 553
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	160
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	126, 150, 166, 184, 376
DpnI	GATC	2 cut(s)	275, 414
DpnII	GATC	2 cut(s)	273, 412
DraIII	CACNNNGTG	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	31, 97
EarI	CTCTTC	2 cut(s)	31, 97
EciI	GGCGGA	3 cut(s)	10, 145, 184
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	261
FaiI	YATR	2 cut(s)	362, 508
FaqI	GGGAC	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	2 cut(s)	177, 507
Fnu4HI	GCNGC	6 cut(s)	6, 9, 36, 283, 310, 432
FokI	GGATG	4 cut(s)	278, 344, 368, 560
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	6 cut(s)	6, 9, 36, 283, 310, 432
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	6 cut(s)	6, 9, 36, 283, 310, 432
HaeIII	GGCC	6 cut(s)	8, 127, 152, 167, 185, 378
HapII	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
HhaI	GCGC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	407, 495
HpaII	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
Hpy166II	GTNNAC	2 cut(s)	178, 508
Hpy188I	TCNGA	4 cut(s)	110, 273, 325, 412
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	178, 508
HpyCH4III	ACNGT	2 cut(s)	347, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HspAI	GCGC	1 cut(s)	424
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	273, 412
LmnI	GCTCC	2 cut(s)	256, 368
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	3 cut(s)	20, 294, 346
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	2 cut(s)	275, 414
MboI	GATC	2 cut(s)	273, 412
MboII	GAAGA	4 cut(s)	18, 84, 87, 436
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	234, 261
MluCI	AATT	2 cut(s)	511, 532
MroNI	GCCGGC	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
MspR9I	CCNGG	6 cut(s)	124, 182, 224, 261, 383, 404
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	164
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
NdeII	GATC	2 cut(s)	273, 412
NgoMIV	GCCGGC	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	258, 414
NotI	GCGGCCGC	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	407, 495
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	2 cut(s)	381, 402
PkrI	GCNGC	6 cut(s)	7, 10, 37, 284, 311, 433
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	258, 414
PspPI	GGNCC	5 cut(s)	126, 150, 166, 184, 376
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	6 cut(s)	6, 9, 36, 283, 310, 432
Sau3AI	GATC	2 cut(s)	273, 412
Sau96I	GGNCC	5 cut(s)	126, 150, 166, 184, 376
ScrFI	CCNGG	6 cut(s)	124, 182, 224, 261, 383, 404
SduI	GDGCHC	2 cut(s)	234, 261
SetI	ASST	6 cut(s)	92, 177, 194, 215, 246, 460
SfaNI	GCATC	3 cut(s)	20, 294, 346
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	511, 532
SsiI	CCGC	9 cut(s)	5, 9, 21, 36, 156, 195, 282, 426, 431
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	122, 180, 222, 259, 381, 402
TaaI	ACNGT	2 cut(s)	347, 542
TaqI	TCGA	5 cut(s)	171, 177, 240, 288, 493
TasI	AATT	2 cut(s)	511, 532
TauI	GCSGC	5 cut(s)	8, 11, 38, 285, 434
TfiI	GAWTC	2 cut(s)	407, 495
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	350
Van91I	CCANNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	177, 507
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.