Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

1894511 .. 1895979

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGGCCACATCCCTCTCCGCCTCTCCAATCGCCGCCGCAACAACCAAGTCCCTCCCCCACTCTCTTCTCCGCTCCAACCTCCCCACCTCCTCTCTCCGATTACCCCAAACCCGGCCCAGAACCAAACCCCTACTCTGCGCCTCCGCCGCCGCAGTCGATGTCGACCAAGCTCCGGCCACCGCCACACCCACCAAGACCCTTCCTTTCCGGGTCGGGCACGGGTTCGACCTGCACCGGTTGGAGCCCGGCTACCCTCTGATCATCGGCGGCATCGACATCCCTCACGATCGAGGCTGCGAGGCTCACTCCGACGGGGATGTGTTGCTTCATTGTGTGGTGGATGCTATACTGGGCGCGTTGGGCCTCCCGGATATTGGGCAGATATTCCCGGATTCGGATCCTAAGTGGCGCGGTGCTTCTTCCTCTGTTTTCATCAAAGAGGCTGTGAGGTTGATGCACGAGGCAGGTTATGAAATTGGAAATTTAGACGCTACCTTGATTCTTCAAAGACCGAAATTAAGCCCACATAAGGAGGTTATGAGGGCCAACTTGGCTAAGCTGCTCGGTGTCGACCCATCTGTTGTGAATCTGAAAGCCAAGACTCATGAGAAGGTCGACAGCCTAGGAGAAAATCGAAGCATTGCAGCTCATACAGTGGTTCTTCTTATGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

227

Amino Acids

24.12

Weight (kDa)

8.81

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	70 - 223	1.8e-62	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	240, 458
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	3 cut(s)	165, 573, 618
AccII	CGCG	2 cut(s)	359, 414
AclWI	GGATC	2 cut(s)	395, 408
AcoI	YGGCCR	2 cut(s)	6, 177
AcsI	RAATTY	1 cut(s)	484
AfiI	CCNNNNNNNGG	5 cut(s)	114, 175, 377, 397, 532
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	509
AluBI	AGCT	3 cut(s)	173, 562, 650
AluI	AGCT	3 cut(s)	173, 562, 650
AlwI	GGATC	2 cut(s)	395, 408
AoxI	GGCC	5 cut(s)	6, 116, 177, 364, 546
ApeKI	GCWGC	3 cut(s)	297, 562, 647
ApoI	RAATTY	1 cut(s)	484
AsiGI	ACCGGT	1 cut(s)	237
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	3 cut(s)	143, 359, 414
AspS9I	GGNCC	3 cut(s)	117, 364, 546
AsuC2I	CCSGG	5 cut(s)	115, 212, 249, 371, 392
AvrII	CCTAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	284, 549, 659
BccI	CCATC	1 cut(s)	586
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	5 cut(s)	115, 212, 249, 371, 392
BfaI	CTAG	1 cut(s)	626
BfuAI	ACCTGC	2 cut(s)	240, 458
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	9 cut(s)	6, 36, 39, 150, 153, 271, 298, 563, 648
BlnI	CCTAGG	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	9 cut(s)	7, 37, 40, 151, 154, 272, 299, 564, 649
Bme1390I	CCNGG	5 cut(s)	115, 212, 249, 371, 392
BmgT120I	GGNCC	3 cut(s)	117, 364, 546
BmiI	GGNNCC	2 cut(s)	246, 402
BmrFI	CCNGG	5 cut(s)	115, 212, 249, 371, 392
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	3 cut(s)	282, 334, 447
BmuI	ACTGGG	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuMI	CCSGG	5 cut(s)	115, 212, 249, 371, 392
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 175, 377, 397, 532
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	4 cut(s)	11, 279, 325, 349
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	5 cut(s)	114, 175, 377, 397, 532
BseMI	GCAATG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	284, 549, 659
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	359, 414
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	8, 118, 179, 366, 548
BshTI	ACCGGT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	292
BsiSI	CCGG	7 cut(s)	115, 176, 211, 238, 249, 371, 392
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	114, 175, 377, 397, 532
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	5 cut(s)	8, 118, 179, 366, 548
Bsp1286I	GDGCHC	2 cut(s)	222, 249
Bsp143I	GATC	3 cut(s)	261, 289, 400
Bsp1720I	GCTNAGC	1 cut(s)	558
BspANI	GGCC	5 cut(s)	8, 118, 179, 366, 548
BspFNI	CGCG	2 cut(s)	359, 414
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	246, 402
BspMI	ACCTGC	2 cut(s)	240, 458
BspPI	GGATC	2 cut(s)	395, 408
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	3 cut(s)	261, 289, 400
BssSI	CACGAG	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	405, 558
BstF5I	GGATG	4 cut(s)	11, 279, 325, 349
BstFNI	CGCG	2 cut(s)	359, 414
BstHHI	GCGC	3 cut(s)	143, 359, 414
BstKTI	GATC	3 cut(s)	264, 292, 403
BstMBI	GATC	3 cut(s)	261, 289, 400
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 363, 554
BstSCI	CCNGG	5 cut(s)	113, 210, 247, 369, 390
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	2 cut(s)	359, 414
BstV1I	GCAGC	3 cut(s)	284, 549, 659
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	5 cut(s)	8, 118, 179, 366, 548
BtsCI	GGATG	4 cut(s)	11, 279, 325, 349
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	2 cut(s)	240, 458
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	3 cut(s)	143, 359, 414
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	117, 364, 546
CseI	GACGC	1 cut(s)	500
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	405, 558
DpnI	GATC	3 cut(s)	263, 291, 402
DpnII	GATC	3 cut(s)	261, 289, 400
EaeI	YGGCCR	2 cut(s)	6, 177
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	2 cut(s)	10, 136
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	1 cut(s)	611
FaiI	YATR	7 cut(s)	350, 474, 531, 542, 609, 654, 671
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	3 cut(s)	165, 573, 618
Fnu4HI	GCNGC	9 cut(s)	6, 36, 39, 150, 153, 271, 298, 563, 648
FokI	GGATG	3 cut(s)	266, 332, 356
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	9 cut(s)	6, 36, 39, 150, 153, 271, 298, 563, 648
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	3 cut(s)	142, 358, 413
GluI	GCNGC	9 cut(s)	6, 36, 39, 150, 153, 271, 298, 563, 648
HaeIII	GGCC	5 cut(s)	8, 118, 179, 366, 548
HapII	CCGG	7 cut(s)	115, 176, 211, 238, 249, 371, 392
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	3 cut(s)	143, 359, 414
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	3 cut(s)	141, 357, 412
HinP1I	GCGC	3 cut(s)	141, 357, 412
HincII	GTYRAC	3 cut(s)	166, 574, 619
HindII	GTYRAC	3 cut(s)	166, 574, 619
HinfI	GANTC	4 cut(s)	395, 502, 589, 604
HpaII	CCGG	7 cut(s)	115, 176, 211, 238, 249, 371, 392
Hpy166II	GTNNAC	3 cut(s)	166, 574, 619
Hpy188I	TCNGA	5 cut(s)	101, 261, 313, 400, 594
Hpy188III	TCNNGA	2 cut(s)	287, 608
Hpy8I	GTNNAC	3 cut(s)	166, 574, 619
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	212, 607
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	235, 460, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 363, 554
HpyF3I	CTNAG	2 cut(s)	405, 558
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	3 cut(s)	141, 357, 412
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	261, 289, 400
LmnI	GCTCC	3 cut(s)	80, 178, 244
Lsp1109I	GCAGC	3 cut(s)	284, 549, 659
LweI	GCATC	3 cut(s)	282, 334, 447
MaeI	CTAG	1 cut(s)	626
MalI	GATC	3 cut(s)	263, 291, 402
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	3 cut(s)	261, 289, 400
MboII	GAAGA	4 cut(s)	59, 414, 497, 656
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	222, 249
MluCI	AATT	3 cut(s)	477, 484, 518
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	3 cut(s)	102, 222, 336
MseI	TTAA	1 cut(s)	521
MspI	CCGG	7 cut(s)	115, 176, 211, 238, 249, 371, 392
MspR9I	CCNGG	5 cut(s)	115, 212, 249, 371, 392
MvnI	CGCG	2 cut(s)	359, 414
MwoI	GCNNNNNNNGC	3 cut(s)	149, 363, 554
NciI	CCSGG	5 cut(s)	115, 212, 249, 371, 392
NdeII	GATC	3 cut(s)	261, 289, 400
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	2 cut(s)	246, 402
PagI	TCATGA	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	395, 502, 589
PfoI	TCCNGGA	2 cut(s)	369, 390
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	9 cut(s)	7, 37, 40, 151, 154, 272, 299, 564, 649
Ple19I	CGATCG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	246, 402
PspPI	GGNCC	3 cut(s)	117, 364, 546
PsuI	RGATCY	1 cut(s)	400
PvuI	CGATCG	1 cut(s)	292
SalI	GTCGAC	3 cut(s)	164, 572, 617
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	9 cut(s)	6, 36, 39, 150, 153, 271, 298, 563, 648
Sau3AI	GATC	3 cut(s)	261, 289, 400
Sau96I	GGNCC	3 cut(s)	117, 364, 546
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	5 cut(s)	115, 212, 249, 371, 392
SduI	GDGCHC	2 cut(s)	222, 249
SfaNI	GCATC	3 cut(s)	282, 334, 447
Sse9I	AATT	3 cut(s)	477, 484, 518
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	5 cut(s)	113, 210, 247, 369, 390
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	658
TaqI	TCGA	8 cut(s)	159, 165, 228, 276, 292, 573, 618, 637
TaqII	GACCGA	1 cut(s)	529
TasI	AATT	3 cut(s)	477, 484, 518
TauI	GCSGC	6 cut(s)	8, 38, 41, 152, 155, 273
TfiI	GAWTC	3 cut(s)	395, 502, 589
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	663
TseI	GCWGC	3 cut(s)	297, 562, 647
TspDTI	ATGAA	3 cut(s)	320, 424, 489
TspRI	CASTG	1 cut(s)	663
XapI	RAATTY	1 cut(s)	484
XmaJI	CCTAGG	1 cut(s)	625
XmiI	GTMKAC	3 cut(s)	165, 573, 618
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.