Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Forward (+)

13377696 .. 13379869

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGGCCGCATCCCTCTCCGCCTCTTCAGTCGCGGCCACAACAACCAAATCACCCCCTCACTCTCTTTTCCTCTCCAATCTCCACACCTCTTCTTCTCCATCTCTCCGATTACCGGAAACCCGGCCCAGGACCAAACCCCTAGTTTGGGCCTCCGCCGGCACGGCCCTCGAGTTCGACCAAGGCCAAACCTCGGTCACCCCCTCCAAGACCTTGCCTTTCCGGGTCGGGCACGGCTTCGACCTCCACCGATTGGAGCCCGGCTACCCTCTGATCATCGGCGGCATCGACATCCCTCACGATAGAGGCTGCGAGGCTCACTCCGATGGGGATGTGTTGCTTCACTGTGTGGTGGATGCTATACTGGGAGCATTGGGCCTCCCGGATATCGGGCAGATATTCCCGGATTCGGATCCCAAGTGGCGCGGTGCGGCGTCCTCTGTCTTCATCAAAGAAGCTGTGAAATTGATGCATGAGGCAGGTTATGAAATTGGAAATTTAGACGCCACCTTGATTCTTCAAAGACCGAAATTGAGCCCACATAAGGAGGTTATGAGGGCCAACTTGGCTAAGCTGCTTGGTGCAGACCCATCTGTTGTGAATCTGAAAGCCAAGACTCATGAGAAGGTCGACAGCCTAGGAGAAAATCGTAGCATTGCAGCTCACACAGTGGTTCTTCTTATGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

230

Amino Acids

24.59

Weight (kDa)

7.88

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	74 - 227	8.1e-62	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	2 cut(s)	35, 426
AciI	CCGC	8 cut(s)	5, 9, 21, 35, 156, 282, 426, 431
AclWI	GGATC	2 cut(s)	407, 420
AcoI	YGGCCR	2 cut(s)	6, 36
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	434, 504
AdeI	CACNNNGTG	2 cut(s)	349, 670
AfiI	CCNNNNNNNGG	9 cut(s)	115, 129, 147, 148, 193, 253, 389, 409, 544
AgsI	TTSAA	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	458, 574, 662
AluI	AGCT	3 cut(s)	458, 574, 662
AlwI	GGATC	2 cut(s)	407, 420
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	8 cut(s)	6, 36, 125, 150, 165, 184, 376, 558
ApeKI	GCWGC	3 cut(s)	309, 574, 659
ApoI	RAATTY	1 cut(s)	496
AspA2I	CCTAGG	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	6 cut(s)	126, 132, 150, 166, 376, 558
AsuC2I	CCSGG	5 cut(s)	124, 224, 261, 383, 404
AsuHPI	GGTGA	2 cut(s)	45, 190
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	132
AvrII	CCTAGG	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	261, 539
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	296, 561, 671
BccI	CCATC	3 cut(s)	109, 320, 598
BceAI	ACGGC	2 cut(s)	180, 250
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
BfaI	CTAG	2 cut(s)	143, 638
BfuAI	ACCTGC	1 cut(s)	470
BglI	GCCNNNNNGGC	2 cut(s)	164, 566
BisI	GCNGC	8 cut(s)	6, 9, 36, 283, 310, 432, 575, 660
BlnI	CCTAGG	1 cut(s)	637
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	8 cut(s)	7, 10, 37, 284, 311, 433, 576, 661
Bme1390I	CCNGG	6 cut(s)	124, 130, 224, 261, 383, 404
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	6 cut(s)	126, 132, 150, 166, 376, 558
BmiI	GGNNCC	2 cut(s)	258, 414
BmrFI	CCNGG	6 cut(s)	124, 130, 224, 261, 383, 404
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	4 cut(s)	20, 294, 346, 459
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuMI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	434, 504
BsaJI	CCNNGG	4 cut(s)	128, 181, 192, 637
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	9 cut(s)	115, 129, 147, 148, 193, 253, 389, 409, 544
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	4 cut(s)	128, 181, 192, 637
BseGI	GGATG	4 cut(s)	11, 291, 337, 361
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	9 cut(s)	115, 129, 147, 148, 193, 253, 389, 409, 544
BseMI	GCAATG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	296, 561, 671
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	2 cut(s)	35, 426
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	8 cut(s)	8, 38, 127, 152, 167, 186, 378, 560
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
BslI	CCNNNNNNNGG	9 cut(s)	115, 129, 147, 148, 193, 253, 389, 409, 544
BsnI	GGCC	8 cut(s)	8, 38, 127, 152, 167, 186, 378, 560
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	234, 261, 539
Bsp143I	GATC	2 cut(s)	273, 412
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	8 cut(s)	5, 9, 21, 35, 156, 282, 426, 431
BspANI	GGCC	8 cut(s)	8, 38, 127, 152, 167, 186, 378, 560
BspFNI	CGCG	2 cut(s)	35, 426
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	258, 414
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	407, 420
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	128, 181, 192, 637
BssMI	GATC	2 cut(s)	273, 412
BssNI	GRCGYC	2 cut(s)	434, 504
BssT1I	CCWWGG	2 cut(s)	181, 637
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	347, 670
Bst6I	CTCTTC	2 cut(s)	31, 97
BstACI	GRCGYC	2 cut(s)	434, 504
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	4 cut(s)	11, 291, 337, 361
BstFNI	CGCG	2 cut(s)	35, 426
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	276, 415
BstMBI	GATC	2 cut(s)	273, 412
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 566
BstNI	CCWGG	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	6 cut(s)	122, 128, 222, 259, 381, 402
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	2 cut(s)	35, 426
BstV1I	GCAGC	3 cut(s)	296, 561, 671
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	8 cut(s)	8, 38, 127, 152, 167, 186, 378, 560
BtsCI	GGATG	4 cut(s)	11, 291, 337, 361
BtsIMutI	CAGTG	2 cut(s)	343, 675
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	619
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	6 cut(s)	126, 132, 150, 166, 376, 558
CseI	GACGC	2 cut(s)	423, 512
CviAII	CATG	2 cut(s)	473, 620
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	275, 414
DpnII	GATC	2 cut(s)	273, 412
DraIII	CACNNNGTG	2 cut(s)	349, 670
EaeI	YGGCCR	2 cut(s)	6, 36
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	31, 97
EarI	CTCTTC	2 cut(s)	31, 97
EciI	GGCGGA	2 cut(s)	10, 145
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	181, 637
Eco24I	GRGCYC	2 cut(s)	261, 539
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	181, 637
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	2 cut(s)	261, 539
ErhI	CCWWGG	2 cut(s)	181, 637
FaeI	CATG	2 cut(s)	476, 623
FaiI	YATR	7 cut(s)	362, 474, 486, 543, 554, 621, 683
FatI	CATG	2 cut(s)	472, 619
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	8 cut(s)	6, 9, 36, 283, 310, 432, 575, 660
FokI	GGATG	3 cut(s)	278, 344, 368
FriOI	GRGCYC	2 cut(s)	261, 539
Fsp4HI	GCNGC	8 cut(s)	6, 9, 36, 283, 310, 432, 575, 660
FspBI	CTAG	2 cut(s)	143, 638
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	8 cut(s)	6, 9, 36, 283, 310, 432, 575, 660
HaeIII	GGCC	8 cut(s)	8, 38, 127, 152, 167, 186, 378, 560
HapII	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
HgaI	GACGC	2 cut(s)	423, 512
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	2 cut(s)	434, 504
Hin1II	CATG	2 cut(s)	476, 623
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	407, 514, 601, 616
HpaII	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
HphI	GGTGA	2 cut(s)	45, 190
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	5 cut(s)	110, 273, 325, 412, 606
Hpy188III	TCNNGA	2 cut(s)	299, 620
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	2 cut(s)	347, 670
HpyCH4V	TGCA	3 cut(s)	472, 584, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 566
HpyF3I	CTNAG	1 cut(s)	570
Hsp92I	GRCGYC	2 cut(s)	434, 504
Hsp92II	CATG	2 cut(s)	476, 623
HspAI	GCGC	1 cut(s)	424
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	273, 412
LmnI	GCTCC	2 cut(s)	256, 368
Lsp1109I	GCAGC	3 cut(s)	296, 561, 671
LweI	GCATC	4 cut(s)	20, 294, 346, 459
MaeI	CTAG	2 cut(s)	143, 638
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	275, 414
MboI	GATC	2 cut(s)	273, 412
MboII	GAAGA	6 cut(s)	18, 84, 87, 436, 509, 668
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	234, 261, 539
MluCI	AATT	4 cut(s)	464, 489, 496, 530
MlyI	GAGTC	1 cut(s)	610
Mph1103I	ATGCAT	1 cut(s)	474
MroNI	GCCGGC	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	7 cut(s)	116, 124, 159, 223, 261, 383, 404
MspR9I	CCNGG	6 cut(s)	124, 130, 224, 261, 383, 404
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	35, 426
MwoI	GCNNNNNNNGC	2 cut(s)	164, 566
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	5 cut(s)	124, 224, 261, 383, 404
NdeII	GATC	2 cut(s)	273, 412
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	476, 623
NlaIV	GGNNCC	2 cut(s)	258, 414
NmuCI	GTSAC	1 cut(s)	196
NotI	GCGGCCGC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	407, 514, 601
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	2 cut(s)	381, 402
PkrI	GCNGC	8 cut(s)	7, 10, 37, 284, 311, 433, 576, 661
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	258, 414
PspPI	GGNCC	6 cut(s)	126, 132, 150, 166, 376, 558
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	629
SatI	GCNGC	8 cut(s)	6, 9, 36, 283, 310, 432, 575, 660
Sau3AI	GATC	2 cut(s)	273, 412
Sau96I	GGNCC	6 cut(s)	126, 132, 150, 166, 376, 558
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	6 cut(s)	124, 130, 224, 261, 383, 404
SduI	GDGCHC	3 cut(s)	234, 261, 539
SfaNI	GCATC	4 cut(s)	20, 294, 346, 459
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	464, 489, 496, 530
SsiI	CCGC	8 cut(s)	5, 9, 21, 35, 156, 282, 426, 431
SspMI	CTAG	2 cut(s)	143, 638
StyD4I	CCNGG	6 cut(s)	122, 128, 222, 259, 381, 402
StyI	CCWWGG	2 cut(s)	181, 637
TaaI	ACNGT	2 cut(s)	347, 670
TaqI	TCGA	5 cut(s)	171, 177, 240, 288, 630
TaqII	GACCGA	2 cut(s)	184, 541
TasI	AATT	4 cut(s)	464, 489, 496, 530
TauI	GCSGC	5 cut(s)	8, 11, 38, 285, 434
TfiI	GAWTC	3 cut(s)	407, 514, 601
TscAI	CASTG	2 cut(s)	350, 675
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	309, 574, 659
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	436, 501
TspRI	CASTG	2 cut(s)	350, 675
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	2 cut(s)	143, 638
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.