Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Forward (+)

2495793 .. 2500081

Gene Structure 4289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGGCAAATCACCGGCTAAATGGATCAAGACTGTTCTGTTTGGGAAGAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGAGAATTTCAAATGAGAAAGAGGTGGTGGTTGCTGCCAGGGCAGCTGCAACTGAATTTGTTGCAGATCCACCTGCAGCTTTTCATGAAAGCACAAACACCACAGATTATAACAAGGGGTTAGAATTGGAAAACAAGGAAGCTCCAAGTGTATTAGGTAATGGAGAGCCAGGAAGCCAAAGTACAGATTCACAAGGCTCTACACCACAAAATGCAGCGTATGATCCTGAAAAAATCAGACAAGAGCAAGCTGCAACAAAGGCACAGGCTGCCTTTAGGGGATATCTGGCTCGCCGCGCCTTTTGGGCCCTCAAAGGCATAATAAGGCTACAGGCACTTATCCGTGGGCACTTGGTGAGGAGACAGGCTGTTGCTACACTTTGCAGTATGTTGGGCATTGTCAAGCTACAGGCACTCAGTCGTGGGCGACAAGTCAGGCAGTCTATTATTGGGCTTGAAGTGCAAAAAAGATGCCATGTTACACCTCTGGAGGGCAGGCTAGTGGATCCTGTTAGAGTTAATATCTCTACTCAAATGGCAAAGCTGACGGTTAATGTTTTTATTAGTAAGCTTCTTGCTTTCTCACCTACTGTGATGCCTCTGCGTTTACATTATGAACCTGGAGATCCAAATTCAGTCCCAAACTGGTTAGAACGTTGGTCAGCAACACATTTTTGGAAACCACTTCCCCAACCAAGAAAAGTTCCAGATTCAAAATCTCAGAGAACACATCGGGATCCTCAAACAGGCAGGGTAAAGCGAAGCACCCGGAGGCTTCCGGCTGCAAATGTTGAAAGTGTCTCGGTGCAAGTTACCTCTGAATCTGAGAAACCCAAACGTATCCTTAGGAAAGTTTCCAGCCAGCCAGCAGATCCAGTGCAGGAAAATCCACAAATTGAGCTTGAAAAGGTTAAACGTAACTTGAGGAAGGTTCATACTCCCATAGTAGAGAACTCTGTGCAGACGGAAATTGAAGCTCAGAATCTCACACAGAATCTGGAAAAGGCATCATCAAGTGTTTCGGGTCATAATGTTTTTGAAGGGATCACAAATAATTCTGTTGAGAAGATGAAGAATGAGCCAATTGTTGCTCTGTTCAATCTGCCTGATGCAGAAATAACTCCTGAACCATCAGCAGCAAAAGAGGTCTTTAACTTATTATCCGATGATCAGGTTGCAATGGATTCGAAGACTTTGACAGAGGGCACTGGTGAAGAAATAAATACACCTAGTGATGAAGCTGCAGTTGAGTCAAACATATTAACAGAGAGCAGTAAAAAAGATGAAAACATCCCTGTTCCAAATGTGGTTTTGAGCCAAGGGGAAGATTTAACAAGCAATGACAACCAGAAATCAAGCAGGAAAACTTCAACTCCAGCCAAACAAGAACGTTCAGAGAATGGGTTGCAAAACAGTCCAACATTGCCAAGCTATATGGCAGCAACTGAGTCTGCAAAGGCAAAGCTGAGGGCACAAGGATCTCCTAGGCTTGGACTGGAGGCTACTGAAAAGACTGAGAAAACTAACTCCACTCGCCGTCATTCTCTGCCATCATCAGCTAATGGCAAAATCACTTCACAGTCTCCAAGGACACAGAAACCTGTTCAATCAGGTGGAAAAGGAGGAATCAAAAGTGACAAATCTCTGTCAGCCTCAAGAGACGGGAAGGCAAGCCAAGCAGAGTGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

591

Amino Acids

64.81

Weight (kDa)

9.76

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4005	PF13178	475 - 572	1.3e-15	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AccII	CGCG	1 cut(s)	378
AciI	CCGC	1 cut(s)	376
AclI	AACGTT	2 cut(s)	736, 1471
AcsI	RAATTY	3 cut(s)	87, 137, 712
AdeI	CACNNNGTG	2 cut(s)	436, 1313
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	3 cut(s)	572, 827, 1571
AjnI	CCWGG	3 cut(s)	119, 250, 700
Alw26I	GTCTC	4 cut(s)	436, 886, 1668, 1734
AlwNI	CAGNNNCTG	2 cut(s)	1078, 1526
AoxI	GGCC	1 cut(s)	387
ApaI	GGGCCC	1 cut(s)	391
ApoI	RAATTY	3 cut(s)	87, 137, 712
AspA2I	CCTAGG	1 cut(s)	1565
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	387, 388
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	4 cut(s)	3, 448, 657, 1304
AsuII	TTCGAA	1 cut(s)	1268
AvrII	CCTAGG	1 cut(s)	1565
AxyI	CCTNAGG	1 cut(s)	926
BaeGI	GKGCMC	4 cut(s)	391, 432, 1289, 1555
BamHI	GGATCC	2 cut(s)	586, 817
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BbsI	GAAGAC	1 cut(s)	1277
BbvCI	CCTCAGC	1 cut(s)	1547
BccI	CCATC	2 cut(s)	1219, 1639
BceAI	ACGGC	1 cut(s)	1602
BcgI	CGANNNNNNTGC	2 cut(s)	1248, 1282
BciT130I	CCWGG	3 cut(s)	121, 252, 702
BciVI	GTATCC	1 cut(s)	932
BclI	TGATCA	1 cut(s)	1249
BcnI	CCSGG	1 cut(s)	850
BcoDI	GTCTC	4 cut(s)	436, 886, 1668, 1734
BfaI	CTAG	3 cut(s)	581, 1311, 1566
BfmI	CTRYAG	4 cut(s)	156, 410, 488, 1323
BfuAI	ACCTGC	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	932
BglI	GCCNNNNNGGC	1 cut(s)	386
BlnI	CCTAGG	1 cut(s)	1565
Bme1390I	CCNGG	4 cut(s)	121, 252, 702, 850
BmgT120I	GGNCC	2 cut(s)	387, 388
BmiI	GGNNCC	3 cut(s)	389, 588, 819
BmrFI	CCNGG	4 cut(s)	121, 252, 702, 850
BmsI	GCATC	4 cut(s)	542, 666, 1097, 1180
BpiI	GAAGAC	1 cut(s)	1277
BpmI	CTGGAG	4 cut(s)	590, 723, 1440, 1598
Bpu10I	CCTNAGC	1 cut(s)	1547
Bpu14I	TTCGAA	1 cut(s)	1268
BpuEI	CTTGAG	2 cut(s)	1024, 1720
BpuMI	CCSGG	1 cut(s)	850
BsaJI	CCNNGG	5 cut(s)	120, 424, 1399, 1565, 1667
BsaXI	ACNNNNNCTCC	2 cut(s)	1438, 1468
Bsc4I	CCNNNNNNNGG	3 cut(s)	572, 827, 1571
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	4 cut(s)	731, 956, 1294, 1581
Bse21I	CCTNAGG	1 cut(s)	926
Bse3DI	GCAATG	3 cut(s)	1266, 1426, 1502
BseBI	CCWGG	3 cut(s)	121, 252, 702
BseDI	CCNNGG	5 cut(s)	120, 424, 1399, 1565, 1667
BseGI	GGATG	2 cut(s)	53, 1371
BseLI	CCNNNNNNNGG	3 cut(s)	572, 827, 1571
BseMI	GCAATG	3 cut(s)	1266, 1426, 1502
BseMII	CTCAG	7 cut(s)	511, 815, 897, 1073, 1518, 1538, 1587
BseNI	ACTGG	4 cut(s)	731, 956, 1294, 1581
BseRI	GAGGAG	1 cut(s)	454
BseSI	GKGCMC	4 cut(s)	391, 432, 1289, 1555
BsgI	GTGCAG	2 cut(s)	980, 1061
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	14, 850, 860
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	3 cut(s)	572, 827, 1571
BsmAI	GTCTC	4 cut(s)	436, 886, 1668, 1734
BsmBI	CGTCTC	1 cut(s)	1734
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	1268
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	4 cut(s)	391, 432, 1289, 1555
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	7 cut(s)	510, 814, 898, 1072, 1519, 1539, 1588
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	389, 588, 819
BspMAI	CTGCAG	2 cut(s)	160, 1327
BspMI	ACCTGC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	1268
BsrDI	GCAATG	3 cut(s)	1266, 1426, 1502
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	4 cut(s)	731, 956, 1294, 1581
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	5 cut(s)	120, 424, 1399, 1565, 1667
BssT1I	CCWWGG	3 cut(s)	1399, 1565, 1667
Bst2UI	CCWGG	3 cut(s)	121, 252, 702
Bst4CI	ACNGT	5 cut(s)	34, 631, 673, 1496, 1662
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	1268
BstC8I	GCNNGC	6 cut(s)	330, 373, 578, 944, 948, 1753
BstDEI	CTNAG	8 cut(s)	497, 801, 906, 926, 1059, 1527, 1547, 1596
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	2 cut(s)	53, 1371
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	380
BstMAI	GTCTC	4 cut(s)	436, 886, 1668, 1734
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 125, 341, 350, 377, 386, 541, 1757
BstNI	CCWGG	3 cut(s)	121, 252, 702
BstSCI	CCNGG	4 cut(s)	119, 250, 700, 848
BstSFI	CTRYAG	4 cut(s)	156, 410, 488, 1323
BstSLI	GKGCMC	4 cut(s)	391, 432, 1289, 1555
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	1277
BstX2I	RGATCY	6 cut(s)	148, 586, 706, 817, 952, 1559
BstYI	RGATCY	6 cut(s)	148, 586, 706, 817, 952, 1559
Bsu36I	CCTNAGG	1 cut(s)	926
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	53, 1371
BtsIMutI	CAGTG	2 cut(s)	963, 1287
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	6 cut(s)	330, 373, 578, 944, 948, 1753
CaiI	CAGNNNCTG	2 cut(s)	1078, 1526
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	387, 388
Csp6I	GTAC	1 cut(s)	264
CspCI	CAANNNNNGTGG	1 cut(s)	1745
CviAII	CATG	2 cut(s)	167, 557
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	8 cut(s)	497, 801, 906, 926, 1059, 1527, 1547, 1596
DraIII	CACNNNGTG	2 cut(s)	436, 1313
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	1399, 1565, 1667
Eco24I	GRGCYC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	926
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	119, 250, 700
EcoRV	GATATC	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	1399, 1565, 1667
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	3 cut(s)	1399, 1565, 1667
Esp3I	CGTCTC	1 cut(s)	1734
FaeI	CATG	2 cut(s)	170, 560
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	2 cut(s)	166, 556
FbaI	TGATCA	1 cut(s)	1249
FokI	GGATG	2 cut(s)	40, 1358
FriOI	GRGCYC	1 cut(s)	391
FspBI	CTAG	3 cut(s)	581, 1311, 1566
GlaI	GCGC	1 cut(s)	379
GsuI	CTGGAG	4 cut(s)	590, 723, 1440, 1598
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	3 cut(s)	14, 850, 860
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	170, 560
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	9 cut(s)	269, 791, 902, 1063, 1075, 1265, 1331, 1529, 1707
HpaII	CCGG	3 cut(s)	14, 850, 860
HphI	GGTGA	4 cut(s)	3, 448, 657, 1304
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	7 cut(s)	320, 804, 901, 907, 1062, 1246, 1477
Hpy188III	TCNNGA	9 cut(s)	28, 167, 308, 569, 788, 815, 1079, 1205, 1737
Hpy8I	GTNNAC	1 cut(s)	689
HpyAV	CCTTC	3 cut(s)	1003, 1115, 1741
HpyCH4III	ACNGT	5 cut(s)	34, 631, 673, 1496, 1662
HpyCH4IV	ACGT	4 cut(s)	736, 919, 997, 1471
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 125, 341, 350, 377, 386, 541, 1757
HpyF3I	CTNAG	8 cut(s)	497, 801, 906, 926, 1059, 1527, 1547, 1596
HpySE526I	ACGT	4 cut(s)	736, 919, 997, 1471
Hsp92II	CATG	2 cut(s)	170, 560
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	1249
LmnI	GCTCC	1 cut(s)	229
LweI	GCATC	4 cut(s)	542, 666, 1097, 1180
MaeI	CTAG	3 cut(s)	581, 1311, 1566
MaeII	ACGT	4 cut(s)	736, 919, 997, 1471
MaeIII	GTNAC	4 cut(s)	559, 892, 998, 1715
MboII	GAAGA	7 cut(s)	58, 90, 1159, 1165, 1282, 1307, 1418
MfeI	CAATTG	1 cut(s)	1164
MflI	RGATCY	6 cut(s)	148, 586, 706, 817, 952, 1559
MhlI	GDGCHC	4 cut(s)	391, 432, 1289, 1555
MluCI	AATT	8 cut(s)	87, 137, 206, 712, 975, 1050, 1135, 1164
MlyI	GAGTC	2 cut(s)	1340, 1538
MmeI	TCCRAC	1 cut(s)	1523
MseI	TTAA	6 cut(s)	600, 633, 993, 1233, 1343, 1412
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	3 cut(s)	14, 850, 860
MspR9I	CCNGG	4 cut(s)	121, 252, 702, 850
MunI	CAATTG	1 cut(s)	1164
MvaI	CCWGG	3 cut(s)	121, 252, 702
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	8 cut(s)	122, 125, 341, 350, 377, 386, 541, 1757
NciI	CCSGG	1 cut(s)	850
NlaIII	CATG	2 cut(s)	170, 560
NlaIV	GGNNCC	3 cut(s)	389, 588, 819
NmuCI	GTSAC	1 cut(s)	1715
NspV	TTCGAA	1 cut(s)	1268
PagI	TCATGA	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	163
PfeI	GAWTC	7 cut(s)	269, 791, 902, 1063, 1075, 1265, 1707
PleI	GAGTC	2 cut(s)	1339, 1537
PpsI	GAGTC	2 cut(s)	1339, 1537
PsiI	TTATAA	1 cut(s)	192
Psp1406I	AACGTT	2 cut(s)	736, 1471
Psp6I	CCWGG	3 cut(s)	119, 250, 700
PspGI	CCWGG	3 cut(s)	119, 250, 700
PspN4I	GGNNCC	3 cut(s)	389, 588, 819
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	387, 388
PstI	CTGCAG	2 cut(s)	160, 1327
PstNI	CAGNNNCTG	2 cut(s)	1078, 1526
PsuI	RGATCY	6 cut(s)	148, 586, 706, 817, 952, 1559
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	6 cut(s)	600, 633, 993, 1233, 1343, 1412
Sau96I	GGNCC	2 cut(s)	387, 388
SchI	GAGTC	2 cut(s)	1340, 1538
ScrFI	CCNGG	4 cut(s)	121, 252, 702, 850
SduI	GDGCHC	4 cut(s)	391, 432, 1289, 1555
SfaNI	GCATC	4 cut(s)	542, 666, 1097, 1180
SfcI	CTRYAG	4 cut(s)	156, 410, 488, 1323
SfuI	TTCGAA	1 cut(s)	1268
SmlI	CTYRAG	2 cut(s)	1003, 1735
SmoI	CTYRAG	2 cut(s)	1003, 1735
Sse9I	AATT	8 cut(s)	87, 137, 206, 712, 975, 1050, 1135, 1164
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	3 cut(s)	581, 1311, 1566
StyD4I	CCNGG	4 cut(s)	119, 250, 700, 848
StyI	CCWWGG	3 cut(s)	1399, 1565, 1667
TaaI	ACNGT	5 cut(s)	34, 631, 673, 1496, 1662
TaiI	ACGT	4 cut(s)	739, 922, 1000, 1474
TaqI	TCGA	1 cut(s)	1268
TasI	AATT	8 cut(s)	87, 137, 206, 712, 975, 1050, 1135, 1164
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	7 cut(s)	269, 791, 902, 1063, 1075, 1265, 1707
Tru1I	TTAA	6 cut(s)	600, 633, 993, 1233, 1343, 1412
Tru9I	TTAA	6 cut(s)	600, 633, 993, 1233, 1343, 1412
TscAI	CASTG	2 cut(s)	963, 1294
TseFI	GTSAC	1 cut(s)	1715
Tsp45I	GTSAC	1 cut(s)	1715
TspDTI	ATGAA	7 cut(s)	155, 183, 711, 1004, 1166, 1332, 1380
TspGWI	ACGGA	2 cut(s)	413, 1061
TspRI	CASTG	2 cut(s)	963, 1294
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	3 cut(s)	87, 137, 712
XmaJI	CCTAGG	1 cut(s)	1565
XspI	CTAG	3 cut(s)	581, 1311, 1566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.