Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Forward (+)

23870885 .. 23874201

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGAGGAAGCTTAGTATTAGAGACTCCTTGAAATCTTTCTTTGAGCCTCATCTTCATCCTGATAATGGTGAATCACTCAAAGGAACAAAAACTGAAATTGATGAGAAAGTGAAGAAAATCTTGGGAATTGTTGAGAGTGGAGATATTGAGGAAGATGAATCCAAAAGACTAGTGGTTGCTGAGTTAGTGAAAGACTTCTACAAAGAGTATGAGTCTTTGTATCACCAATACGATGATCTAACGGGTGAGATCAGGAAAAAAGTACATGGAAAAGGAGAGAACGATAGCTCTTCTTCTTCGAGCTCAGATTCGGATTCAGATAAGAAGAGCAAGAGAAACGGGCGGGGTGAGAATGAGATAGAGTTGTTAAAGAAACAGATGGAAGATGCAAATCTTGAAATTGCTGATCTCAAAATGAAGTTAGCAACAACTGATGAACACAAAGAAGCTGTTGAATCAGAGCACCAGGAGATTTTGAAGAAGTTAAAGGAATCAGATGAGATTTGTGGGAATTTGAGAGTTGAAACTGAGAAGTTAACAAGTGAGAACAAAGAACTGAATGAGAAACTTGAAGTTGCTGGTGAGACGGAATCTGATCTGAATCAGAAGCTAGAAGATGTGAAGAAAGAGAGAGATGGTTTGGAAGCAGAGCTTGCGAGTAAGGCTAAAGATCACGAGAGTACACTGGAAGAAGTTAACCGTCTGCAAGGGCAAAAGAACGAAACCGAAGCAGAACTCGAGAGAGAGAAGCAAGAGAAACCAGCGTTACTGAATCAGATAAACGATGTGCAGAAAGCATTGTTAGAGCAAGAAGCTGCTTACAATACGCTGAGCCAAGAACACAAACAGATCAACGGTTTGTTCGAAGAACGAGAAGCAACAATCAAGAAGCTAACAGATGATTACAAACAAGCCCGAGAGATGTTGGAGGAGTACATGTCAAAGATGGAGGAGACAGAGAGGAGAATGCAAGAGACCGGTAAAGATGTTGCATCCAGGGAATCTGCGATTGTAGATCTTGAAGAGACGGTAGAGAGTCTACGTAATGAAGTGGAGAGGAAAGGAGATGAGATAGAGAGTTTGATGGAGAAGATGAGTAACATCGAGGTTAAACTCCGTTTGTCTAACCAGAAACTGAGAGTAACCGAACAAGTGTTGACAGAGAAAGAAGGAGAGTTAAAGAGAATAGAAGCTAAGCATTTAGAGGAACAAGCATTGCTCGAGGAGAAGATCGCAACAACCCACGAAACATATCGAGGTTTGATCAAAGAGATATCAGAGAGAGTGGATTCAACAATACTAAACCGGTTCCAATCCTTGTCTGAAAAACTTGAAGAGAAGCACAAAAGCTACGAGAAAACAGTGGTTGAAGCGACGAAGATGCTCTTGACGGCGAAGAAGTGTGTGGTAGAGATGAAGAAGGAGAAAGACGAGATGGCGAAGGAGAAGGAAGAGGTGGAGAAGAAGCTTGAAGGTCAAGTAAGAGAAGAGGAGAAAGAGAAGGAGAAGTTGAAGGAGACATTGTTGGGATTAGGAGAAGAGAAGAGAGAAGCGATAAGACAGTTATGTATATGGATCGAACACCATAGAGACCGTTGTGAGTATCTTGAAGAGGTTTTGTCGAAAATGGTCGTGGCAAGAGGACAAAGAAGGTCACAACGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

555

Amino Acids

64.49

Weight (kDa)

5.11

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	14 - 78	1.7e-09	KIP1-like protein
CCDC39	PF24161	256 - 398	6.8e-06	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1039
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	1583
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	3 cut(s)	264, 682, 935
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	936
AgeI	ACCGGT	2 cut(s)	977, 1305
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	465, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
Alw21I	GWGCWC	2 cut(s)	305, 465
Alw26I	GTCTC	7 cut(s)	15, 578, 947, 968, 1019, 1511, 1584
AlwI	GGATC	1 cut(s)	1583
AlwNI	CAGNNNCTG	1 cut(s)	1135
Ama87I	CYCGRG	3 cut(s)	737, 915, 1220
ApeKI	GCWGC	1 cut(s)	815
ApoI	RAATTY	1 cut(s)	511
AsiGI	ACCGGT	2 cut(s)	977, 1305
Asp700I	GAANNNNTTC	2 cut(s)	35, 194
AsuHPI	GGTGA	5 cut(s)	80, 215, 257, 359, 593
AsuII	TTCGAA	1 cut(s)	864
AvaI	CYCGRG	3 cut(s)	737, 915, 1220
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	674
Bbv12I	GWGCWC	2 cut(s)	305, 465
BbvI	GCAGC	1 cut(s)	802
BccI	CCATC	5 cut(s)	373, 629, 940, 1078, 1429
BceAI	ACGGC	1 cut(s)	1407
BcgI	CGANNNNNNTGC	2 cut(s)	1363, 1397
BciT130I	CCWGG	2 cut(s)	467, 997
BclI	TGATCA	1 cut(s)	1263
BcoDI	GTCTC	7 cut(s)	15, 578, 947, 968, 1019, 1511, 1584
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 611
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	1 cut(s)	816
BlpI	GCTNAGC	2 cut(s)	830, 1194
BlsI	GCNGC	1 cut(s)	817
Bme1390I	CCNGG	2 cut(s)	467, 997
BmeT110I	CYCGRG	3 cut(s)	737, 915, 1220
BmiI	GGNNCC	1 cut(s)	1310
BmrFI	CCNGG	2 cut(s)	467, 997
BmsI	GCATC	3 cut(s)	376, 1001, 1371
Bpu1102I	GCTNAGC	2 cut(s)	830, 1194
Bpu14I	TTCGAA	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	1043
BsaBI	GATNNNNATC	2 cut(s)	390, 600
BsaI	GGTCTC	2 cut(s)	968, 1584
BsaJI	CCNNGG	1 cut(s)	996
BsaWI	WCCGGW	2 cut(s)	977, 1305
BsaXI	ACNNNNNCTCC	4 cut(s)	923, 953, 1508, 1538
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	2 cut(s)	977, 1305
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	1214
Bse8I	GATNNNNATC	2 cut(s)	390, 600
BseBI	CCWGG	2 cut(s)	467, 997
BseDI	CCNNGG	1 cut(s)	996
BseGI	GGATG	2 cut(s)	55, 992
BseJI	GATNNNNATC	2 cut(s)	390, 600
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	1214
BseMII	CTCAG	5 cut(s)	171, 318, 519, 821, 1127
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	5 cut(s)	944, 965, 976, 1238, 1505
BseXI	GCAGC	1 cut(s)	802
BsgI	GTGCAG	1 cut(s)	809
BshTI	ACCGGT	2 cut(s)	977, 1305
BsiHKAI	GWGCWC	2 cut(s)	305, 465
BsiHKCI	CYCGRG	3 cut(s)	737, 915, 1220
BsiSI	CCGG	2 cut(s)	978, 1306
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	7 cut(s)	15, 578, 947, 968, 1019, 1511, 1584
BsmBI	CGTCTC	2 cut(s)	578, 1019
BsmI	GAATGC	1 cut(s)	972
Bso31I	GGTCTC	2 cut(s)	968, 1584
BsoBI	CYCGRG	3 cut(s)	737, 915, 1220
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	305, 465
Bsp1720I	GCTNAGC	2 cut(s)	830, 1194
BspACI	CCGC	1 cut(s)	343
BspCNI	CTCAG	5 cut(s)	172, 317, 520, 822, 1128
BspLI	GGNNCC	1 cut(s)	1310
BspPI	GGATC	1 cut(s)	1583
BspQI	GCTCTTC	2 cut(s)	295, 320
BspT104I	TTCGAA	1 cut(s)	864
BspTNI	GGTCTC	2 cut(s)	968, 1584
BsrDI	GCAATG	1 cut(s)	1214
BsrFI	RCCGGY	2 cut(s)	977, 1305
BsrI	ACTGG	1 cut(s)	690
BssAI	RCCGGY	2 cut(s)	977, 1305
BssECI	CCNNGG	1 cut(s)	996
BssSI	CACGAG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	467, 997
Bst4CI	ACNGT	6 cut(s)	701, 857, 1030, 1363, 1563, 1595
Bst6I	CTCTTC	9 cut(s)	295, 320, 1017, 1329, 1446, 1482, 1533, 1538, 1605
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	1043
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	7 cut(s)	11, 180, 304, 528, 830, 1136, 1194
BstF5I	GGATG	2 cut(s)	55, 992
BstMAI	GTCTC	7 cut(s)	15, 578, 947, 968, 1019, 1511, 1584
BstMWI	GCNNNNNNNGC	2 cut(s)	653, 662
BstNI	CCWGG	2 cut(s)	467, 997
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	2 cut(s)	465, 995
BstSNI	TACGTA	1 cut(s)	1043
BstV1I	GCAGC	1 cut(s)	802
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BtsCI	GGATG	2 cut(s)	55, 992
BtsIMutI	CAGTG	2 cut(s)	683, 1368
Cac8I	GCNNGC	1 cut(s)	654
CaiI	CAGNNNCTG	1 cut(s)	1135
Cfr10I	RCCGGY	2 cut(s)	977, 1305
Csp6I	GTAC	3 cut(s)	263, 681, 934
CspAI	ACCGGT	2 cut(s)	977, 1305
CviAII	CATG	2 cut(s)	266, 937
CviQI	GTAC	3 cut(s)	263, 681, 934
DdeI	CTNAG	7 cut(s)	11, 180, 304, 528, 830, 1136, 1194
Eam1104I	CTCTTC	9 cut(s)	295, 320, 1017, 1329, 1446, 1482, 1533, 1538, 1605
EarI	CTCTTC	9 cut(s)	295, 320, 1017, 1329, 1446, 1482, 1533, 1538, 1605
Ecl136II	GAGCTC	1 cut(s)	303
Eco105I	TACGTA	1 cut(s)	1043
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	2 cut(s)	968, 1584
Eco32I	GATATC	1 cut(s)	1275
Eco53kI	GAGCTC	1 cut(s)	303
Eco88I	CYCGRG	3 cut(s)	737, 915, 1220
EcoICRI	GAGCTC	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	465, 995
EcoRV	GATATC	1 cut(s)	1275
EcoT38I	GRGCYC	1 cut(s)	305
Esp3I	CGTCTC	2 cut(s)	578, 1019
FaeI	CATG	2 cut(s)	269, 940
FaiI	YATR	8 cut(s)	210, 267, 938, 1252, 1567, 1571, 1573, 1587
FalI	AAGNNNNNCTT	6 cut(s)	104, 136, 636, 668, 1370, 1402
FatI	CATG	2 cut(s)	265, 936
FauI	CCCGC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	1263
FblI	GTMKAC	1 cut(s)	1039
Fnu4HI	GCNGC	1 cut(s)	816
FokI	GGATG	2 cut(s)	42, 979
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	816
FspBI	CTAG	2 cut(s)	170, 611
GluI	GCNGC	1 cut(s)	816
HapII	CCGG	2 cut(s)	978, 1306
Hin1II	CATG	2 cut(s)	269, 940
HincII	GTYRAC	3 cut(s)	537, 697, 1158
HindII	GTYRAC	3 cut(s)	537, 697, 1158
HindIII	AAGCTT	2 cut(s)	8, 1466
HpaI	GTTAAC	2 cut(s)	537, 697
HpaII	CCGG	2 cut(s)	978, 1306
HphI	GGTGA	5 cut(s)	80, 215, 257, 359, 593
Hpy166II	GTNNAC	5 cut(s)	537, 683, 697, 1040, 1158
Hpy188III	TCNNGA	9 cut(s)	59, 253, 395, 674, 739, 886, 1019, 1387, 1607
Hpy8I	GTNNAC	5 cut(s)	537, 683, 697, 1040, 1158
Hpy99I	CGWCG	1 cut(s)	1378
HpyAV	CCTTC	8 cut(s)	1163, 1414, 1435, 1441, 1466, 1495, 1507, 1644
HpyCH4III	ACNGT	6 cut(s)	701, 857, 1030, 1363, 1563, 1595
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	5 cut(s)	389, 706, 790, 970, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	653, 662
HpyF3I	CTNAG	7 cut(s)	11, 180, 304, 528, 830, 1136, 1194
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	2 cut(s)	269, 940
Ksp22I	TGATCA	1 cut(s)	1263
KspAI	GTTAAC	2 cut(s)	537, 697
LguI	GCTCTTC	2 cut(s)	295, 320
Lsp1109I	GCAGC	1 cut(s)	802
LweI	GCATC	3 cut(s)	376, 1001, 1371
MaeI	CTAG	2 cut(s)	170, 611
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	4 cut(s)	765, 1097, 1141, 1653
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	2 cut(s)	305, 465
MluCI	AATT	4 cut(s)	96, 126, 399, 511
MlyI	GAGTC	3 cut(s)	17, 221, 1045
MmeI	TCCRAC	1 cut(s)	906
MroXI	GAANNNNTTC	2 cut(s)	35, 194
MseI	TTAA	7 cut(s)	368, 485, 536, 696, 1110, 1178, 1666
MspI	CCGG	2 cut(s)	978, 1306
MspR9I	CCNGG	2 cut(s)	467, 997
Mva1269I	GAATGC	1 cut(s)	972
MvaI	CCWGG	2 cut(s)	467, 997
MwoI	GCNNNNNNNGC	2 cut(s)	653, 662
NlaIII	CATG	2 cut(s)	269, 940
NlaIV	GGNNCC	1 cut(s)	1310
NmuCI	GTSAC	1 cut(s)	1653
NspI	RCATGY	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	864
PaeR7I	CTCGAG	2 cut(s)	737, 1220
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	2 cut(s)	295, 320
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PctI	GAATGC	1 cut(s)	972
PdmI	GAANNNNTTC	2 cut(s)	35, 194
PinAI	ACCGGT	2 cut(s)	977, 1305
PkrI	GCNGC	1 cut(s)	817
PleI	GAGTC	3 cut(s)	17, 220, 1044
PpsI	GAGTC	3 cut(s)	17, 220, 1044
Ppu21I	YACGTR	1 cut(s)	1043
PscI	ACATGT	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	465, 995
PspGI	CCWGG	2 cut(s)	465, 995
PspN4I	GGNNCC	1 cut(s)	1310
PspXI	VCTCGAGB	1 cut(s)	1220
PstNI	CAGNNNCTG	1 cut(s)	1135
PsuI	RGATCY	1 cut(s)	1015
RsaI	GTAC	3 cut(s)	264, 682, 935
RsaNI	GTAC	3 cut(s)	263, 681, 934
SacI	GAGCTC	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	295, 320
SaqAI	TTAA	7 cut(s)	368, 485, 536, 696, 1110, 1178, 1666
SatI	GCNGC	1 cut(s)	816
SchI	GAGTC	3 cut(s)	17, 221, 1045
ScrFI	CCNGG	2 cut(s)	467, 997
SduI	GDGCHC	2 cut(s)	305, 465
SfaNI	GCATC	3 cut(s)	376, 1001, 1371
Sfr274I	CTCGAG	2 cut(s)	737, 1220
SfuI	TTCGAA	1 cut(s)	864
SlaI	CTCGAG	2 cut(s)	737, 1220
SmlI	CTYRAG	2 cut(s)	737, 1220
SmoI	CTYRAG	2 cut(s)	737, 1220
SnaBI	TACGTA	1 cut(s)	1043
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	4 cut(s)	96, 126, 399, 511
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	2 cut(s)	170, 611
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	465, 995
TaaI	ACNGT	6 cut(s)	701, 857, 1030, 1363, 1563, 1595
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	8 cut(s)	299, 738, 864, 1104, 1221, 1255, 1578, 1622
TasI	AATT	4 cut(s)	96, 126, 399, 511
TatI	WGTACW	3 cut(s)	262, 680, 933
Tru1I	TTAA	7 cut(s)	368, 485, 536, 696, 1110, 1178, 1666
Tru9I	TTAA	7 cut(s)	368, 485, 536, 696, 1110, 1178, 1666
TscAI	CASTG	2 cut(s)	690, 1368
TseFI	GTSAC	1 cut(s)	1653
TseI	GCWGC	1 cut(s)	815
Tsp45I	GTSAC	1 cut(s)	1653
TspDTI	ATGAA	6 cut(s)	44, 171, 431, 450, 1062, 1430
TspGWI	ACGGA	2 cut(s)	602, 1106
TspRI	CASTG	2 cut(s)	690, 1368
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	2 cut(s)	737, 1220
XmiI	GTMKAC	1 cut(s)	1039
XmnI	GAANNNNTTC	2 cut(s)	35, 194
XspI	CTAG	2 cut(s)	170, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.