Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035983.1

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 889

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 889 bp

actgcttaatgaacaggaggatttatacaccaagttaaatgaggaacataaacagcttgaaggtaagtgtcaggactatgaggttagcattgaatccaaagatcagataatagctgatttggaacaaatgtctgaagacctgaaaagagaccttgaagaaaaaggtgatgaacttggttctttggtagagaaatctcgcaatactgaagttaagctccgtctgtcaaaccagaagctccgggttacagagcaagtactggccgagaaggaacacaacttcagaattgctgagctgaaattccaagaagaacaaagagtgctcgaagacaggattgctgcattgtctggtataatctctgcaaacaatgaagcttatcagagaaacatcaactgtatttcagacaatgtgaacagttctttgactgcactggaatctgtgattaagaaatttgtggatgactatgcgaagtatgagaagtgtattgctgaaacgtcggagcagcttcagactgcaaagaaatgggttgcggaaacaaatgatgagagagagaagttgaagagggaggtgggggccctaagcaaacaactgcaagataaaaaagcggaagcattggtgtttagagagagggttgagaagttggagacagaggcgagcaaggaacaagtggagaaggggggtctgatcaaagctgtgaatcagcttgaaaagaaggtagaggagttgaagcagattgtggaagagaagaacaagggcatattgggtctgggagaggagaagcgggaagccataaggcagctgtgcatatggatagagtatcatcagagtcgctatgatcatctcaaggaggtgcttttaaagatggctccaagaggccagaggagggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

295

Amino Acids

34.29

Weight (kDa)

5.36

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	528, 603, 779
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	297, 447
AcuI	CTGAAG	4 cut(s)	154, 226, 263, 489
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	881
AgsI	TTSAA	6 cut(s)	60, 93, 156, 557, 705, 725
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	142, 636
AoxI	GGCC	3 cut(s)	259, 571, 872
ApaI	GGGCCC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	336, 500, 794
ApoI	RAATTY	2 cut(s)	297, 447
AspS9I	GGNCC	2 cut(s)	571, 572
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	2 cut(s)	142, 331
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	323, 512, 806
BccI	CCATC	1 cut(s)	854
BclI	TGATCA	2 cut(s)	682, 833
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	142, 636
BfaI	CTAG	1 cut(s)	887
BisI	GCNGC	3 cut(s)	337, 501, 795
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	3 cut(s)	338, 502, 796
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	571, 572
BmiI	GGNNCC	3 cut(s)	572, 573, 865
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	142, 331
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse1I	ACTGG	2 cut(s)	262, 433
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	262, 433
BseRI	GAGGAG	2 cut(s)	732, 786
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	323, 512, 806
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	261, 573, 874
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmAI	GTCTC	2 cut(s)	142, 636
BsnI	GGCC	3 cut(s)	261, 573, 874
Bso31I	GGTCTC	1 cut(s)	142
Bsp120I	GGGCCC	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	322, 575
Bsp143I	GATC	3 cut(s)	101, 682, 833
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	3 cut(s)	528, 603, 779
BspANI	GGCC	3 cut(s)	261, 573, 874
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	572, 573, 865
BspTNI	GGTCTC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	262, 433
BssMI	GATC	3 cut(s)	101, 682, 833
Bst4CI	ACNGT	2 cut(s)	393, 414
Bst6I	CTCTTC	2 cut(s)	552, 733
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	289, 576
BstF5I	GGATG	1 cut(s)	461
BstKTI	GATC	3 cut(s)	104, 685, 836
BstMAI	GTCTC	2 cut(s)	142, 636
BstMBI	GATC	3 cut(s)	101, 682, 833
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	323, 512, 806
BstV2I	GAAGAC	2 cut(s)	142, 331
BsuRI	GGCC	3 cut(s)	261, 573, 874
BtsCI	GGATG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	571, 572
Csp6I	GTAC	1 cut(s)	255
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	289, 576
DpnI	GATC	3 cut(s)	103, 684, 835
DpnII	GATC	3 cut(s)	101, 682, 833
DraI	TTTAAA	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	552, 733
EarI	CTCTTC	2 cut(s)	552, 733
Eco24I	GRGCYC	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	4 cut(s)	154, 226, 263, 489
EcoO109I	RGGNCCY	2 cut(s)	571, 572
EcoT38I	GRGCYC	1 cut(s)	575
FauI	CCCGC	1 cut(s)	772
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	2 cut(s)	682, 833
Fnu4HI	GCNGC	3 cut(s)	337, 501, 795
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	337, 501, 795
FspBI	CTAG	1 cut(s)	887
GluI	GCNGC	3 cut(s)	337, 501, 795
HaeIII	GGCC	3 cut(s)	261, 573, 874
HapII	CCGG	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	4 cut(s)	93, 432, 695, 824
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	9 cut(s)	106, 134, 282, 379, 401, 497, 508, 682, 823
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	4 cut(s)	54, 260, 665, 704
HpyCH4III	ACNGT	2 cut(s)	393, 414
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	339, 360, 426, 513, 590, 802
HpyF3I	CTNAG	2 cut(s)	289, 576
HpySE526I	ACGT	1 cut(s)	492
Ksp22I	TGATCA	2 cut(s)	682, 833
Kzo9I	GATC	3 cut(s)	101, 682, 833
LmnI	GCTCC	4 cut(s)	220, 241, 497, 869
LpnPI	CCDG	9 cut(s)	57, 153, 243, 243, 252, 314, 331, 414, 750
Lsp1109I	GCAGC	3 cut(s)	323, 512, 806
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	103, 684, 835
MboI	GATC	3 cut(s)	101, 682, 833
MboII	GAAGA	7 cut(s)	147, 168, 318, 336, 569, 750, 755
MhlI	GDGCHC	2 cut(s)	322, 575
MluCI	AATT	3 cut(s)	283, 297, 447
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	2 cut(s)	475, 619
MseI	TTAA	5 cut(s)	7, 36, 211, 442, 855
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	3 cut(s)	101, 682, 833
NlaIV	GGNNCC	3 cut(s)	572, 573, 865
NmeAIII	GCCGAG	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	93, 432, 695
PkrI	GCNGC	3 cut(s)	338, 502, 796
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PspN4I	GGNNCC	3 cut(s)	572, 573, 865
PspOMI	GGGCCC	1 cut(s)	571
PspPI	GGNCC	2 cut(s)	571, 572
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	5 cut(s)	7, 36, 211, 442, 855
SatI	GCNGC	3 cut(s)	337, 501, 795
Sau3AI	GATC	3 cut(s)	101, 682, 833
Sau96I	GGNCC	2 cut(s)	571, 572
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	322, 575
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
Sse9I	AATT	3 cut(s)	283, 297, 447
SsiI	CCGC	3 cut(s)	528, 603, 779
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	393, 414
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	322
TasI	AATT	3 cut(s)	283, 297, 447
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	93, 432, 695
Tru1I	TTAA	5 cut(s)	7, 36, 211, 442, 855
Tru9I	TTAA	5 cut(s)	7, 36, 211, 442, 855
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	3 cut(s)	336, 500, 794
TspDTI	ATGAA	3 cut(s)	25, 184, 382
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	2 cut(s)	297, 447
XspI	CTAG	1 cut(s)	887
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.