Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Forward (+)

54894115 .. 54900956

Gene Structure 6842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCGTGGCAAGCAAGATAAGGATAGCGGTTCTTCATCGAGCTCAGAGTCTGATTCAGAATATTCTTCAAATGACAAGAAAAGTAAAAATGGACTACTGGAAAGTGACTATCAGAAAATAGCTGATGTTAAGCAAGAACTCGAATCAGCACATCTAGAAGTTGCTGACCTGAAGAGGAAACTGACGGCTACAATTGAAGAAAAAGAGGCTTTAAACTTGGAATATGCGACGGCTTTGAGCAAGATAGAAGAAACAGAGAAGATTTCCAAAGATTTGAAGACTGAAGCTGAAAGATTAGATGTTGAAAAACTGAAACTTTTGGCTGAGAATAGTGAACTAGATCAAAAACTTGAGACTGGTGGAAAGAAAGAAGCTGAACTGAGTCGAAAAGTGGAAGACTTGGAAAGGGAGAGAGATAATCTGATTAAGGAGAAAGAGACTGGTCTGAGAAGGATTGAAGATGGAGAAAATATTTCAGCAGACTTGAGAAGTTTGGTTGATCACATGAAAGATGAAAAAGTAATCCTCGAGCAACAACTAGAATCTCTTAGAGGGGACATCTCAAATATGAAGCATGAGCTGGAATCTTCAGAGCAGCAAATGTCAGATTTAAGCAAAGCTAAGGAGGAAGAAACCTTGAAAGTTTTGGAGATATCAAGTGAGATTCAGCAGGCACAGAATGTGATACAAGAACTCACAGATGAAGCTAGTCAGCTTAAGGAAAAACTCGATCAGAAGGAGCAGGACCTTGAATCTTTGCAAGGTCAGAAAAGAGATTTTGGAAGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

264

Amino Acids

30.03

Weight (kDa)

4.67

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcuI	CTGAAG	3 cut(s)	191, 303, 573
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	7 cut(s)	69, 197, 277, 305, 458, 640, 752
AluBI	AGCT	8 cut(s)	42, 122, 287, 374, 580, 620, 707, 715
AluI	AGCT	8 cut(s)	42, 122, 287, 374, 580, 620, 707, 715
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	347, 431
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	284, 402
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	2 cut(s)	201, 246
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	347, 431
BfaI	CTAG	4 cut(s)	155, 338, 539, 708
BfrI	CTTAAG	1 cut(s)	716
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme18I	GGWCC	1 cut(s)	745
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	745
BpiI	GAAGAC	2 cut(s)	284, 402
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	371, 505
Bse1I	ACTGG	3 cut(s)	102, 361, 445
BseMII	CTCAG	4 cut(s)	57, 315, 371, 437
BseNI	ACTGG	3 cut(s)	102, 361, 445
BseXI	GCAGC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	347, 431
BsmFI	GGGAC	1 cut(s)	569
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	340, 499, 730
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	4 cut(s)	56, 316, 372, 438
BspTI	CTTAAG	1 cut(s)	716
BsrI	ACTGG	3 cut(s)	102, 361, 445
BssMI	GATC	3 cut(s)	340, 499, 730
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	11, 672
BstDEI	CTNAG	6 cut(s)	43, 324, 380, 446, 548, 621
BstKTI	GATC	3 cut(s)	343, 502, 733
BstMAI	GTCTC	2 cut(s)	347, 431
BstMBI	GATC	3 cut(s)	340, 499, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	2 cut(s)	284, 402
Cac8I	GCNNGC	2 cut(s)	11, 672
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	745
CviAII	CATG	2 cut(s)	505, 575
DdeI	CTNAG	6 cut(s)	43, 324, 380, 446, 548, 621
DpnI	GATC	3 cut(s)	342, 501, 732
DpnII	GATC	3 cut(s)	340, 499, 730
DraI	TTTAAA	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	745
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	191, 303, 573
Eco88I	CYCGRG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	2 cut(s)	508, 578
FaiI	YATR	4 cut(s)	225, 506, 569, 576
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	2 cut(s)	504, 574
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	4 cut(s)	155, 338, 539, 708
GluI	GCNGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	508, 578
HinfI	GANTC	8 cut(s)	47, 53, 143, 382, 542, 584, 664, 752
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	444, 730
HpyCH4V	TGCA	1 cut(s)	760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	6 cut(s)	43, 324, 380, 446, 548, 621
Hsp92II	CATG	2 cut(s)	508, 578
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	340, 499, 730
LmnI	GCTCC	1 cut(s)	739
LpnPI	CCDG	7 cut(s)	83, 182, 342, 426, 566, 656, 728
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	4 cut(s)	155, 338, 539, 708
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	342, 501, 732
MboI	GATC	3 cut(s)	340, 499, 730
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	56, 391
MnlI	CCTC	5 cut(s)	168, 199, 536, 545, 619
MseI	TTAA	5 cut(s)	129, 212, 426, 611, 717
MspCI	CTTAAG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	3 cut(s)	340, 499, 730
NlaIII	CATG	2 cut(s)	508, 578
NmuCI	GTSAC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	527
PfeI	GAWTC	6 cut(s)	53, 143, 542, 584, 664, 752
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	55, 390
PpsI	GAGTC	2 cut(s)	55, 390
PpuMI	RGGWCCY	1 cut(s)	745
Psp124BI	GAGCTC	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	745
PspPPI	RGGWCCY	1 cut(s)	745
PspXI	VCTCGAGB	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	129, 212, 426, 611, 717
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	3 cut(s)	340, 499, 730
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	2 cut(s)	56, 391
SduI	GDGCHC	1 cut(s)	44
Sfr274I	CTCGAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	745
SlaI	CTCGAG	1 cut(s)	527
SmlI	CTYRAG	4 cut(s)	350, 484, 527, 716
SmoI	CTYRAG	4 cut(s)	350, 484, 527, 716
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	2 cut(s)	62, 472
SspMI	CTAG	4 cut(s)	155, 338, 539, 708
SstI	GAGCTC	1 cut(s)	44
TaqI	TCGA	5 cut(s)	38, 141, 385, 528, 729
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	6 cut(s)	53, 143, 542, 584, 664, 752
Tru1I	TTAA	5 cut(s)	129, 212, 426, 611, 717
Tru9I	TTAA	5 cut(s)	129, 212, 426, 611, 717
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	5 cut(s)	24, 521, 528, 584, 717
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	745
XbaI	TCTAGA	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	527
XspI	CTAG	4 cut(s)	155, 338, 539, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.