Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Reverse (-)

13272485 .. 13275830

Gene Structure 3346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGATGACAAAACACCGCTTTCGGGAGTCTATTAAGTCCTTGTTTGGAAGTCACATCGATGCAGAGAAGGATGAACAGCTCAAAGGGACTAAAATAGATATGGAGGACAAAGTGAACAGAATATTGAAGCTTCTAAAAGATGAAGATCTTGAAGAAAAAGATTCCAACCCGGTGGAGAACTCCAAAAAGGAACCTCTTGCAGAGCTAATTCAGGATTTCCACAAACAATACCAATCCCTCTATGCAGAATATGATCATCTAACAGGAGTGCTAAAGAAAAAAATGCGTGGCAAGCAAGATAAGGATAACAGTTCTTCATCGAGCTCAGAGTCTGATTCAGAATATTCTTCAAATGACAAGAAAAGTAAGAATGGACTACTGGAAGGTGACTATCAGAAAATAGCTGATGTTAAGCAAGAACTCGAATCAGCACATCTAGAAGTTGCTGACCTGAAGAGGAAACTGACGGCTACAATTGAAGAAAAAGAGGCGTTAAACTTGGAATATGCGACAGCTTTGAGCAAGATAGAAGAAACAGAGAAGATTTCCAAAGATTTGAAGACTGAAGCTGAAAGATTAGATGTTGAAAAACTGAAACTTTTGGCTGAGAATAGTGAACTAGATCAAAAACTTGAGACTGGTGGAAAGAAAGAAGCTGAACTGAGTCGAAAAGTGGAAGATTTGGAAAGAGAGAGAGATAATCTGATTAAGGAGAAAGAGACTAGTCTAAGAAGGATTGAAGATGGAGAAAATATTTCAGCAGACTTGAGAAGTTTGGTTGATCACATGAAAGATGAAAAAGTAATCCTCGAGCAACAACTAGAATCTCTTAGAGGGGACATCTCAAATATGAAGCATGAGCTGGAATCTTCAGAGCAGCAAGTGTCAGATTTAAGCAAAGCTAAGGAGGAAGAAACCTTGAAAGTTTTGGAGATCTCAAGTGAGATTCAGCAGGCACAGAATGTGATACAAGAACTCACAGATGAAGCTAGTCAGCTTAAGGAAAAACTCGATCAGAAGGAGCAGGACCTTGAATCTTTGCAAGGTCAGAAAAGAGATTTGGAAGTGAAGTTTGAGAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTCGAATCAATGTCTAAAGAGAGAGAAGCTGAACTTTCTGTTCTCACGAAGAAATTTGAGGAGACCAACAATGAACATAGTCAGGTACGGGAGCAATTAGGTCAGAGGGAAATGGAGTATTCAACTCTGTCTGAGAGGCACAAGCTGCATGAGAACGAAACATTGGCGCAAATAAAGGGATTGGAGGAAAAAGTGTCAGAGCTGAAATCGGCCCTCGAATCTTTGCAAGGCGAGAAAAGAAATATGGAAGTGAAGTTTGAAAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGAGAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

479

Amino Acids

55.23

Weight (kDa)

4.91

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	15 - 85	5.2e-18	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AciI	CCGC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	1125, 1187
AcuI	CTGAAG	3 cut(s)	473, 585, 855
AfaI	GTAC	1 cut(s)	1221
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	998
AhlI	ACTAGT	1 cut(s)	722
AjuI	GAANNNNNNNTTGG	4 cut(s)	1043, 1075, 1280, 1312
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	3 cut(s)	629, 713, 1190
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	1344
ApeKI	GCWGC	2 cut(s)	877, 1279
ApoI	RAATTY	2 cut(s)	1125, 1187
AspLEI	GCGC	1 cut(s)	1303
AspS9I	GGNCC	2 cut(s)	1027, 1345
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	809
AvaII	GGWCC	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	889, 1266
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	483
BclI	TGATCA	2 cut(s)	253, 781
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	629, 713, 1190
BcuI	ACTAGT	1 cut(s)	722
BfaI	CTAG	5 cut(s)	437, 620, 723, 821, 990
BfrI	CTTAAG	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	1100
BglII	AGATCT	2 cut(s)	145, 933
BisI	GCNGC	2 cut(s)	878, 1280
BlsI	GCNGC	2 cut(s)	879, 1281
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	1027
BmeT110I	CYCGRG	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	1027, 1345
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	3 cut(s)	653, 787, 922
BpuMI	CCSGG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	1190
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	4 cut(s)	384, 643, 1098, 1416
Bse8I	GATNNNNATC	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	4 cut(s)	339, 597, 653, 1257
BseNI	ACTGG	4 cut(s)	384, 643, 1098, 1416
BseRI	GAGGAG	3 cut(s)	1115, 1208, 1433
BseXI	GCAGC	2 cut(s)	889, 1266
BshFI	GGCC	1 cut(s)	1346
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	100, 851
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	629, 713, 1190
BsmFI	GGGAC	2 cut(s)	100, 851
BsmI	GAATGC	2 cut(s)	1111, 1429
BsnI	GGCC	1 cut(s)	1346
Bso31I	GGTCTC	1 cut(s)	1190
BsoBI	CYCGRG	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	1346
BspCNI	CTCAG	4 cut(s)	338, 598, 654, 1258
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	1100
BspTI	CTTAAG	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	1190
BsrI	ACTGG	4 cut(s)	384, 643, 1098, 1416
BssMI	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	449
BstAFI	CTTAAG	1 cut(s)	998
BstAPI	GCANNNNNTGC	1 cut(s)	1279
BstC8I	GCNNGC	2 cut(s)	293, 954
BstDEI	CTNAG	7 cut(s)	325, 606, 662, 728, 830, 903, 1266
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	1303
BstKTI	GATC	6 cut(s)	148, 256, 625, 784, 936, 1015
BstMAI	GTCTC	3 cut(s)	629, 713, 1190
BstMBI	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 1279
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	889, 1266
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	2 cut(s)	145, 933
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	145, 933
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	1346
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	2 cut(s)	293, 954
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	1303
Cfr13I	GGNCC	2 cut(s)	1027, 1345
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	1220
CviAII	CATG	3 cut(s)	787, 857, 1283
CviQI	GTAC	1 cut(s)	1220
DdeI	CTNAG	7 cut(s)	325, 606, 662, 728, 830, 903, 1266
DpnI	GATC	6 cut(s)	147, 255, 624, 783, 935, 1014
DpnII	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	1190
Eco47I	GGWCC	1 cut(s)	1027
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	3 cut(s)	473, 585, 855
Eco88I	CYCGRG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	3 cut(s)	790, 860, 1286
FalI	AAGNNNNNCTT	2 cut(s)	1152, 1184
FaqI	GGGAC	2 cut(s)	100, 851
FatI	CATG	3 cut(s)	786, 856, 1282
FbaI	TGATCA	2 cut(s)	253, 781
Fnu4HI	GCNGC	2 cut(s)	878, 1280
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	878, 1280
FspBI	CTAG	5 cut(s)	437, 620, 723, 821, 990
GlaI	GCGC	1 cut(s)	1302
GluI	GCNGC	2 cut(s)	878, 1280
HaeIII	GGCC	1 cut(s)	1346
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	1303
Hin1II	CATG	3 cut(s)	790, 860, 1286
Hin6I	GCGC	1 cut(s)	1301
HinP1I	GCGC	1 cut(s)	1301
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	115, 617, 1115
Hpy188III	TCNNGA	5 cut(s)	23, 149, 212, 437, 1180
Hpy8I	GTNNAC	3 cut(s)	115, 617, 1115
HpyAV	CCTTC	4 cut(s)	61, 377, 726, 1012
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	8 cut(s)	62, 200, 245, 1042, 1109, 1282, 1360, 1427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 1279
HpyF3I	CTNAG	7 cut(s)	325, 606, 662, 728, 830, 903, 1266
Hsp92II	CATG	3 cut(s)	790, 860, 1286
HspAI	GCGC	1 cut(s)	1301
Ksp22I	TGATCA	2 cut(s)	253, 781
Kzo9I	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
LmnI	GCTCC	2 cut(s)	1021, 1225
Lsp1109I	GCAGC	2 cut(s)	889, 1266
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	5 cut(s)	437, 620, 723, 821, 990
MaeIII	GTNAC	2 cut(s)	50, 386
MalI	GATC	6 cut(s)	147, 255, 624, 783, 935, 1014
MboI	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	2 cut(s)	145, 933
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	5 cut(s)	207, 474, 1125, 1187, 1229
MlyI	GAGTC	3 cut(s)	35, 338, 673
MmeI	TCCRAC	1 cut(s)	189
MseI	TTAA	6 cut(s)	33, 411, 494, 708, 893, 999
MslI	CAYNNNNRTG	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	2 cut(s)	1111, 1429
MwoI	GCNNNNNNNGC	2 cut(s)	292, 1279
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
NlaIII	CATG	3 cut(s)	790, 860, 1286
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	50, 386
PaeR7I	CTCGAG	1 cut(s)	809
PctI	GAATGC	2 cut(s)	1111, 1429
PfeI	GAWTC	9 cut(s)	161, 335, 425, 824, 866, 946, 1034, 1139, 1352
PkrI	GCNGC	2 cut(s)	879, 1281
PleI	GAGTC	3 cut(s)	34, 337, 672
PpsI	GAGTC	3 cut(s)	34, 337, 672
PpuMI	RGGWCCY	1 cut(s)	1027
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	1027
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	1027, 1345
PspPPI	RGGWCCY	1 cut(s)	1027
PspXI	VCTCGAGB	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	145, 933
RsaI	GTAC	1 cut(s)	1221
RsaNI	GTAC	1 cut(s)	1220
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	326
SaqAI	TTAA	6 cut(s)	33, 411, 494, 708, 893, 999
SatI	GCNGC	2 cut(s)	878, 1280
Sau3AI	GATC	6 cut(s)	145, 253, 622, 781, 933, 1012
Sau96I	GGNCC	2 cut(s)	1027, 1345
SchI	GAGTC	3 cut(s)	35, 338, 673
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	809
SinI	GGWCC	1 cut(s)	1027
SlaI	CTCGAG	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	5 cut(s)	632, 766, 809, 937, 998
SmoI	CTYRAG	5 cut(s)	632, 766, 809, 937, 998
SpeI	ACTAGT	1 cut(s)	722
Sse9I	AATT	5 cut(s)	207, 474, 1125, 1187, 1229
SsiI	CCGC	1 cut(s)	16
SspI	AATATT	3 cut(s)	123, 344, 754
SspMI	CTAG	5 cut(s)	437, 620, 723, 821, 990
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	8 cut(s)	57, 320, 423, 667, 810, 1011, 1137, 1350
TasI	AATT	5 cut(s)	207, 474, 1125, 1187, 1229
TfiI	GAWTC	9 cut(s)	161, 335, 425, 824, 866, 946, 1034, 1139, 1352
Tru1I	TTAA	6 cut(s)	33, 411, 494, 708, 893, 999
Tru9I	TTAA	6 cut(s)	33, 411, 494, 708, 893, 999
TseFI	GTSAC	2 cut(s)	50, 386
TseI	GCWGC	2 cut(s)	877, 1279
Tsp45I	GTSAC	2 cut(s)	50, 386
TspDTI	ATGAA	8 cut(s)	87, 156, 306, 803, 810, 866, 999, 1221
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	2 cut(s)	1125, 1187
XbaI	TCTAGA	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	809
XspI	CTAG	5 cut(s)	437, 620, 723, 821, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.