Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Forward (+)

23919058 .. 23928845

Gene Structure 9788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1102300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3960 bp

ATGCCAAAGCACCGCATGAGGGAAATTAAGTCCTTATTTGGAAGTCACATCAATTCACAGAAGCATGAAGAGCTGAAAGGAACTAAAATAGGTATTGAGGAGAAGGTGAATAAAATATTGAAGCTTCTAAAAAATGAAGAGCTTAAAAAAGATGACATCCCAGTAGAGAACTCCAAAGTGGAACCTCTCGCTGAGCTAATTCAGGATTTCCACAAGGATTACCAATCACTGTATGCACAATATGATCAACTAACTGGAGCGCTGAAGGAAAAAGTTTGGAGCAAACAAGAAAAGGACAACAGCTCTTCATCAAGTTCAGACTCAGATTCCGATCATTCTTCAAATGAAAAAAGCCGTAAAAATGGAGTGATGGAAAGTGACTTTCAGAAAATAACTGATGGGATCAAGCAGGAACTTGAATTGGCACATCAAGAAGTTGCTGACCTGAAGAGGAGATTGACCGCTACAAGTGAAGAGAAGGAAGCTTTAAGCTCAGATTGTGCGGCGGCTTTGACCAAGATAGAAGAAAAGGAGAGTGTTTTTATTGACTTGAAGACTGCAGCTGAAAGGTTAGATGCTGAAAAATCACTACTTTTGGCTGAGAATGGTGAGCTAAAACAAAAACTGGAAGCTGGTGGAAAGATAGAAGCTGAATTGATTCAAAAAGTGGAAGATGTGGAAGGAGAGAAAGATAACTTGATTAAGGAGAAAGAGACTGCTCTGAGAACGATTGAAGATGGAGAGACTATTACAGCGGAATTAAGAACCGTGATTGATCGGCTGAAAGATGAAAAAGTAACCCTTGAGCAAGAACTAGAATCTGTTCGAGGGGAAGTCATCCATATAAAGCAGAAGCTGCAATCTGCAGAAGAGCAGGTATCAGATTTAAGCCACAATCTGAAAGCCAAGGAGGAAGAAACAACTGAATCTAGTCAGCTACGGGAGAAATTGGGTCAGAGGGAAGTGGAATATTTGGCTCTGTCTGAGATGCATGAGCTGCATGAGAAGGAAACTTTGGCTCAAATTATGGAATTACAGGCTGCTGTGACAGGGCTGGAACTGGAGCTGGAATCTTTGCGAGCTCAGAAAAGAGATATGGAAGTGAAGATTGAGAGCACAGAAGCTGAAGTAAAACAACTGGGAGAGGTGAGTGCAGGACTGCAAGTCCAAATTTCAGAAGTTGAGTCAATATCAAATGAGAAAGCAGCAGAACTTTCTGCTCTCACGAAAAACCTTGAAGATTACAAAAGTGAATCTATTCAGCTGAAGGAGAAATTGGGTCAGAGGGAACTGAAGGAGAAATTGGGTCAGAGGGAAGTGGAATACTCAGCTCTGTCTGAGATGCATGAGCTGCATAAGAGTAAAACATTTGCTCAAATTACGGGATTAGAGGCTGCTGTGGCAGGGCTGGAACTGGAGCTGGAATCTTTGCGAGGTCAGAAAACAGATATCGAAGTTGAGATTGAGAACAAAGAAACTCAAGTGAAACAACTAGCAGAAGAGAATGCGGGACTGCAAGCCCGAATTTCACAACTTGAATCAATATCAAATGAGAGAGAAGCCGAATTTTCTTCCCTGGCAAAGAAATTTGAGGACAGCAGTAATGAATATGGTCAGCTACAGGAGAAACTGGGTCAGATGGAAGTGGAACACTCAACTCTGGCTGAGATGCATGAGCTGCATAAGAGTAAAACGTTGGCTCAAATTACAGGTTTAGAGGCTGCTGTGGCAGGGCTGGAACTGGAGCTGGAATCCTTGCGAGGTCAGAAAGAAGATATAGAGGTTGAGATTGAGAAGAAAGAAACTCAAGTGAAACAACTAGCAGAAGAGAATGTGGGATTGCAAGCCCGAATTTCAGAACTTGAATCAATATCAAATGAGAGAGAAGCTGAACTTTCTGCTCTGACGAAGAAACTTGAGGACAGCAGTAATGAATATGGTCAGCTACAAGAGAAACTGGGTCAGAGGGAAAAGGAATACTCAACTCTGTCTGAGATGCACAATCTGCATGAGATTGAAACACTGGATAAAATAAAAGGATTTGACTCAGAAGTTACAGGGCTAGCACTGGAGCTGGAATCTTTGCGACATGAGAAGAGTGGTTTGGAAGTAGAGATCGAGAGCAAAGAAACTGTAGCAAAACAACTGGGAGAGGAAAATGCGGGACTGCAAGCCCGAATTTCAGAACTTGAATCGACTTTGAAAGACAGAGAAGCTGAACTTTCCGATCTCACGAAGAAACTTGAGGACAGCAATCATGAATCGTCATCCAGAATAGCAGATTTGTCCGCACAGATCAATAATCTGCTAGCTGAGGTAGATTCTTTGCGTGCCCAGAAAGTTGAGTTGGAGGAACTTATAGTATCCAAAGGTGATGAAGCATCGACTCAGGTCAAGGGATTAACGGAACAAGTAAATGTGTTGCAGCAGGAATTGTTGTCAATGCAGAGCGGGAAAACTGAATTGCAAGTGCAGCTTGAGAACAAAACTCAAGAAGTTTCTGAATTCTTGATACAGATACAGAATCTGAAAGAAGAAATAACAAACAAGATAACGGATCATGAGAGGGTTGTGGAAGAGAAAGAGAGTTTGACGGCAGAAAAGAGAGAGATTGAGATAAAGGTGGACTCAATACACAACCACAAAAGTGAACTCGAAGAGGAGATAAGAACAAAATGCCTCGAGAGTGATCAATTGAGAGTGGAAATTGTTGAGCTAAGGGATCAAATTGTTGAATTTGAGAGGAGACTAACAGAAAAAGAGGCCGAGTTTTCTTCCCTCCAGGAGAAACATGACAGTGCAGTGAATGACACTTCTGCTCAAATAACAGCCTTTGTATCACAGGTTACTAATCTACAACAGGATTTGGATTCATTGCAGGCTGAGAAGAACCAGATGGAGTTGCAGTTTGAGAGGGAGAAACAAGAACTTTCACAGAGCCTGACGCAATTGGAAAATGAAAAGGTTGAGTTAGAGAGCAAGATTGCTGATCATCAGAGACTGCTGAATGAACACGAGGAGACATATGGCAAGTTAAAAGATGAATATATGCAGCTGGAGAGTCATATCCAGGACAGTAAGGTCAACCAAGACGCTGCAGAAAGGAAAATCGAGCAAATGGCGGAAGATTTCAGTAAGAAAATTGAATCCAAAGATGAGACAATAGCTGATTTGGAGCAAGAGGCTGAATATCTGAAACGAGATCTTGAAGAAAAAGGGTACGAGCTTAGTTCTTTGGTTGAAAACTCCCGTAATGTTGAAGTTAAGCTCCGCCTGTCAAACCAGAAGCTCCGGGTTACAGAGCAGGTATTGACTGAGAAAGAGGAGAGCTTCAGAAAGGCAGAACTGAAATTCCTGGAAGAACAGAGAGCACTTGAAGACAGGATTGCTAGATTGTCTGATATAATCTCTGCAAACAACGAAGCCTATCAAAGAAACATCACACTTGTTGCAGAAAATGTGAACAGTTATTTCAGCGGAATGGAATCCATGATAAAAAAATTTATGGACGACTGTGCAGAGTATGAGACGTGCATTCTGGAAACATCGCAGGAGCTTCACGTTGCAAAGAATTGGGTTGCAGAAACAAGGAGTGAAAGAGAGACGTTGAAGAGGGAGGTGGGGGACCTAATTGAACAACTGCGAGATAAGAAAGAAGAAGCATTGGTGCTTGGAGAGCAGGTCGAGAGGATGCGGGCAAAGGCAAGCAAGGAAGAAGTGGAGAAGGGGAGTCTGATCAAGGCCATGAGCCAACTTGAGAAGAAAGCGGCGGACTTGGAGAAGGTGGTGGAGGAGAAAACAGAGGGAATGCTGGGATTAGGAGAGGAGAAGAGGGAAGCCATAAGACAGTTGTGCATATGGATCGAGTATCACCAAAGCCGGTACGATCATCTCAAGGAAATTCTCTCGAAGACAACTCCTGCAAGAGGCCAGACGAGGGCTTCGACATCTCGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

1320

Amino Acids

150.49

Weight (kDa)

4.8

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	13 - 82	1.6e-12	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3080
Acc36I	ACCTGC	3 cut(s)	865, 3295, 3670
AccBSI	CCGCTC	1 cut(s)	2451
AclI	AACGTT	1 cut(s)	1694
AclWI	GGATC	4 cut(s)	410, 2565, 2730, 3869
AcuI	CTGAAG	6 cut(s)	284, 467, 1146, 1286, 1313, 3316
AfaI	GTAC	2 cut(s)	3221, 3884
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	19, 3926, 3937
AhdI	GACNNNNNGTC	2 cut(s)	1163, 3951
AjiI	CACGTC	1 cut(s)	3531
AjnI	CCWGG	4 cut(s)	1575, 2781, 3069, 3354
AleI	CACNNNNGTG	1 cut(s)	2646
AloI	GAACNNNNNNTCC	2 cut(s)	3336, 3368
Alw21I	GWGCWC	3 cut(s)	1084, 1118, 3373
Alw26I	GTCTC	8 cut(s)	707, 737, 2740, 2992, 3014, 3152, 3521, 3596
AlwI	GGATC	4 cut(s)	410, 2565, 2730, 3869
AlwNI	CAGNNNCTG	5 cut(s)	856, 1124, 2527, 2941, 3001
Ama87I	CYCGRG	1 cut(s)	2681
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	3 cut(s)	2763, 3741, 3928
ArsI	GACNNNNNNTTYG	2 cut(s)	3925, 3957
Asp700I	GAANNNNTTC	3 cut(s)	657, 822, 1257
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	3625
AsuC2I	CCSGG	1 cut(s)	3293
AsuHPI	GGTGA	5 cut(s)	118, 620, 1159, 2384, 3863
AsuNHI	GCTAGC	2 cut(s)	2062, 2308
AvaI	CYCGRG	1 cut(s)	2681
AvaII	GGWCC	1 cut(s)	3625
BaeGI	GKGCMC	1 cut(s)	2335
BanII	GRGCYC	1 cut(s)	1084
BauI	CACGAG	1 cut(s)	3014
BbsI	GAAGAC	3 cut(s)	560, 3384, 3917
Bbv12I	GWGCWC	3 cut(s)	1084, 1118, 3373
BbvCI	CCTCAGC	1 cut(s)	2313
BccI	CCATC	5 cut(s)	364, 392, 731, 1633, 2890
BceAI	ACGGC	2 cut(s)	339, 2610
BcgI	CGANNNNNNTGC	2 cut(s)	3844, 3878
BciT130I	CCWGG	4 cut(s)	1577, 2783, 3071, 3356
BciVI	GTATCC	1 cut(s)	2374
BclI	TGATCA	4 cut(s)	244, 2689, 2989, 3735
BcnI	CCSGG	1 cut(s)	3293
BcoDI	GTCTC	8 cut(s)	707, 737, 2740, 2992, 3014, 3152, 3521, 3596
BfaI	CTAG	7 cut(s)	815, 930, 1493, 1820, 2063, 2309, 3390
BfmI	CTRYAG	5 cut(s)	558, 864, 1619, 2133, 3096
BfoI	RGCGCY	1 cut(s)	263
BfuAI	ACCTGC	3 cut(s)	865, 3295, 3670
BfuI	GTATCC	1 cut(s)	2374
BglII	AGATCT	1 cut(s)	3202
BlpI	GCTNAGC	1 cut(s)	192
Bme1390I	CCNGG	5 cut(s)	1577, 2783, 3071, 3293, 3356
Bme18I	GGWCC	1 cut(s)	3625
BmeRI	GACNNNNNGTC	2 cut(s)	1163, 3951
BmeT110I	CYCGRG	1 cut(s)	2681
BmgBI	CACGTC	1 cut(s)	3531
BmgT120I	GGNCC	1 cut(s)	3625
BmiI	GGNNCC	2 cut(s)	183, 3626
BmrFI	CCNGG	5 cut(s)	1577, 2783, 3071, 3293, 3356
BmrI	ACTGGG	5 cut(s)	155, 1148, 1640, 1967, 2156
BmsI	GCATC	7 cut(s)	565, 978, 1332, 1659, 1986, 2390, 3681
BmtI	GCTAGC	2 cut(s)	2066, 2312
BmuI	ACTGGG	5 cut(s)	155, 1148, 1640, 1967, 2156
BoxI	GACNNNNGTC	1 cut(s)	2390
BpiI	GAAGAC	3 cut(s)	560, 3384, 3917
BpmI	CTGGAG	7 cut(s)	276, 1082, 1436, 1763, 2090, 2765, 3077
Bpu10I	CCTNAGC	2 cut(s)	2313, 2717
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	9 cut(s)	824, 1464, 1791, 1937, 2264, 2475, 2498, 3776, 3878
BpuMI	CCSGG	1 cut(s)	3293
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	906, 1575
BsaXI	ACNNNNNCTCC	4 cut(s)	2891, 2921, 3666, 3696
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 3926, 3937
Bse118I	RCCGGY	1 cut(s)	3879
Bse3DI	GCAATG	1 cut(s)	2873
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	4 cut(s)	1577, 2783, 3071, 3356
BseDI	CCNNGG	2 cut(s)	906, 1575
BseGI	GGATG	4 cut(s)	156, 837, 2267, 3696
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	3 cut(s)	19, 3926, 3937
BseMI	GCAATG	1 cut(s)	2873
BseRI	GAGGAG	8 cut(s)	113, 466, 2675, 2758, 3032, 3338, 3806, 3839
BseSI	GKGCMC	1 cut(s)	2335
BseYI	CCCAGC	1 cut(s)	3811
BsgI	GTGCAG	4 cut(s)	1173, 2492, 2820, 3537
BshFI	GGCC	3 cut(s)	2765, 3743, 3930
BsiHKAI	GWGCWC	3 cut(s)	1084, 1118, 3373
BsiHKCI	CYCGRG	1 cut(s)	2681
BsiSI	CCGG	2 cut(s)	3292, 3880
BslFI	GGGAC	3 cut(s)	1524, 2178, 3638
BslI	CCNNNNNNNGG	3 cut(s)	19, 3926, 3937
BsmAI	GTCTC	8 cut(s)	707, 737, 2740, 2992, 3014, 3152, 3521, 3596
BsmBI	CGTCTC	2 cut(s)	3521, 3596
BsmFI	GGGAC	3 cut(s)	1524, 2178, 3638
BsmI	GAATGC	3 cut(s)	1510, 3534, 3813
BsnI	GGCC	3 cut(s)	2765, 3743, 3930
BsoBI	CYCGRG	1 cut(s)	2681
Bsp1286I	GDGCHC	4 cut(s)	1084, 1118, 2335, 3373
Bsp1720I	GCTNAGC	1 cut(s)	192
BspANI	GGCC	3 cut(s)	2765, 3743, 3930
BspHI	TCATGA	2 cut(s)	2257, 2560
BspLI	GGNNCC	2 cut(s)	183, 3626
BspMAI	CTGCAG	3 cut(s)	562, 868, 3100
BspMI	ACCTGC	3 cut(s)	865, 3295, 3670
BspOI	GCTAGC	2 cut(s)	2066, 2312
BspPI	GGATC	4 cut(s)	410, 2565, 2730, 3869
BspQI	GCTCTTC	4 cut(s)	63, 132, 310, 864
BsrBI	CCGCTC	1 cut(s)	2451
BsrDI	GCAATG	1 cut(s)	2873
BsrFI	RCCGGY	1 cut(s)	3879
BssAI	RCCGGY	1 cut(s)	3879
BssECI	CCNNGG	2 cut(s)	906, 1575
BssSI	CACGAG	1 cut(s)	3014
BssT1I	CCWWGG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	3014
Bst2UI	CCWGG	4 cut(s)	1577, 2783, 3071, 3356
Bst4CI	ACNGT	8 cut(s)	231, 769, 2134, 2798, 3077, 3467, 3515, 3849
BstAPI	GCANNNNNTGC	5 cut(s)	856, 997, 1351, 1678, 2005
BstENI	CCTNNNNNAGG	1 cut(s)	3924
BstF5I	GGATG	4 cut(s)	156, 837, 2267, 3696
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstMAI	GTCTC	8 cut(s)	707, 737, 2740, 2992, 3014, 3152, 3521, 3596
BstNI	CCWGG	4 cut(s)	1577, 2783, 3071, 3356
BstPAI	GACNNNNGTC	1 cut(s)	2390
BstSCI	CCNGG	5 cut(s)	1575, 2781, 3069, 3291, 3354
BstSFI	CTRYAG	5 cut(s)	558, 864, 1619, 2133, 3096
BstSLI	GKGCMC	1 cut(s)	2335
BstV2I	GAAGAC	3 cut(s)	560, 3384, 3917
BstX2I	RGATCY	1 cut(s)	3202
BstYI	RGATCY	1 cut(s)	3202
BsuI	GTATCC	1 cut(s)	2374
BsuRI	GGCC	3 cut(s)	2765, 3743, 3930
BtgZI	GCGATG	1 cut(s)	3531
BtrI	CACGTC	1 cut(s)	3531
BtsCI	GGATG	4 cut(s)	156, 837, 2267, 3696
BtsI	GCAGTG	1 cut(s)	2808
BtsIMutI	CAGTG	5 cut(s)	227, 2021, 2066, 2803, 2808
BveI	ACCTGC	3 cut(s)	865, 3295, 3670
CaiI	CAGNNNCTG	5 cut(s)	856, 1124, 2527, 2941, 3001
CciI	TCATGA	2 cut(s)	2257, 2560
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	3879
Cfr13I	GGNCC	1 cut(s)	3625
CseI	GACGC	2 cut(s)	2953, 3101
Csp6I	GTAC	2 cut(s)	3220, 3883
CviQI	GTAC	2 cut(s)	3220, 3883
DrdI	GACNNNNNNGTC	1 cut(s)	3080
DriI	GACNNNNNGTC	2 cut(s)	1163, 3951
DseDI	GACNNNNNNGTC	1 cut(s)	3080
Eam1105I	GACNNNNNGTC	2 cut(s)	1163, 3951
EciI	GGCGGA	3 cut(s)	3137, 3260, 3785
Ecl136II	GAGCTC	1 cut(s)	1082
Eco130I	CCWWGG	1 cut(s)	906
Eco24I	GRGCYC	1 cut(s)	1084
Eco32I	GATATC	1 cut(s)	1450
Eco47I	GGWCC	1 cut(s)	3625
Eco47III	AGCGCT	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	1082
Eco57I	CTGAAG	6 cut(s)	284, 467, 1146, 1286, 1313, 3316
Eco88I	CYCGRG	1 cut(s)	2681
EcoICRI	GAGCTC	1 cut(s)	1082
EcoNI	CCTNNNNNAGG	1 cut(s)	3924
EcoO109I	RGGNCCY	1 cut(s)	3625
EcoRI	GAATTC	1 cut(s)	2504
EcoRII	CCWGG	4 cut(s)	1575, 2781, 3069, 3354
EcoRV	GATATC	1 cut(s)	1450
EcoT14I	CCWWGG	1 cut(s)	906
EcoT22I	ATGCAT	3 cut(s)	993, 1347, 1674
EcoT38I	GRGCYC	1 cut(s)	1084
ErhI	CCWWGG	1 cut(s)	906
Esp3I	CGTCTC	2 cut(s)	3521, 3596
FalI	AAGNNNNNCTT	8 cut(s)	786, 818, 1878, 1910, 2205, 2237, 2460, 2492
FaqI	GGGAC	3 cut(s)	1524, 2178, 3638
FauI	CCCGC	4 cut(s)	1501, 2155, 2444, 3687
FauNDI	CATATG	2 cut(s)	3025, 3857
FbaI	TGATCA	4 cut(s)	244, 2689, 2989, 3735
FokI	GGATG	4 cut(s)	143, 824, 2254, 3703
FriOI	GRGCYC	1 cut(s)	1084
FspBI	CTAG	7 cut(s)	815, 930, 1493, 1820, 2063, 2309, 3390
GlaI	GCGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	3815
GsuI	CTGGAG	7 cut(s)	276, 1082, 1436, 1763, 2090, 2765, 3077
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	2765, 3743, 3930
HapII	CCGG	2 cut(s)	3292, 3880
HgaI	GACGC	2 cut(s)	2953, 3101
HhaI	GCGC	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	3085
HindII	GTYRAC	1 cut(s)	3085
HindIII	AAGCTT	2 cut(s)	122, 483
HpaII	CCGG	2 cut(s)	3292, 3880
HphI	GGTGA	5 cut(s)	118, 620, 1159, 2384, 3863
Hpy166II	GTNNAC	4 cut(s)	2626, 2651, 3085, 3463
Hpy8I	GTNNAC	4 cut(s)	2626, 2651, 3085, 3463
HpyAV	CCTTC	9 cut(s)	97, 259, 472, 674, 1000, 1261, 1288, 3718, 3775
HpyCH4III	ACNGT	8 cut(s)	231, 769, 2134, 2798, 3077, 3467, 3515, 3849
HpyCH4IV	ACGT	4 cut(s)	1694, 3530, 3561, 3605
HpySE526I	ACGT	4 cut(s)	1694, 3530, 3561, 3605
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	4 cut(s)	244, 2689, 2989, 3735
LguI	GCTCTTC	4 cut(s)	63, 132, 310, 864
LweI	GCATC	7 cut(s)	565, 978, 1332, 1659, 1986, 2390, 3681
MaeI	CTAG	7 cut(s)	815, 930, 1493, 1820, 2063, 2309, 3390
MaeII	ACGT	4 cut(s)	1694, 3530, 3561, 3605
MaeIII	GTNAC	7 cut(s)	44, 377, 796, 1045, 2053, 2845, 3295
MbiI	CCGCTC	1 cut(s)	2451
MfeI	CAATTG	2 cut(s)	2693, 2948
MflI	RGATCY	1 cut(s)	3202
MhlI	GDGCHC	4 cut(s)	1084, 1118, 2335, 3373
MlyI	GAGTC	7 cut(s)	314, 1193, 2039, 2380, 2621, 3070, 3739
MmeI	TCCRAC	1 cut(s)	2328
Mph1103I	ATGCAT	3 cut(s)	993, 1347, 1674
MroXI	GAANNNNTTC	3 cut(s)	657, 822, 1257
MseI	TTAA	9 cut(s)	27, 144, 488, 702, 761, 887, 2402, 3035, 3264
MslI	CAYNNNNRTG	2 cut(s)	2646, 2796
MspA1I	CMGCKG	5 cut(s)	563, 755, 1264, 3055, 3477
MspI	CCGG	2 cut(s)	3292, 3880
MspR9I	CCNGG	5 cut(s)	1577, 2783, 3071, 3293, 3356
MunI	CAATTG	2 cut(s)	2693, 2948
Mva1269I	GAATGC	3 cut(s)	1510, 3534, 3813
MvaI	CCWGG	4 cut(s)	1577, 2783, 3071, 3356
NciI	CCSGG	1 cut(s)	3293
NdeI	CATATG	2 cut(s)	3025, 3857
NheI	GCTAGC	2 cut(s)	2062, 2308
NlaIV	GGNNCC	2 cut(s)	183, 3626
NmeAIII	GCCGAG	1 cut(s)	2791
NmuCI	GTSAC	3 cut(s)	44, 377, 1045
NsiI	ATGCAT	3 cut(s)	993, 1347, 1674
OliI	CACNNNNGTG	1 cut(s)	2646
PaeR7I	CTCGAG	1 cut(s)	2681
PagI	TCATGA	2 cut(s)	2257, 2560
PciSI	GCTCTTC	4 cut(s)	63, 132, 310, 864
PcsI	WCGNNNNNNNCGW	1 cut(s)	3941
PctI	GAATGC	3 cut(s)	1510, 3534, 3813
PdmI	GAANNNNTTC	3 cut(s)	657, 822, 1257
PfoI	TCCNGGA	3 cut(s)	2781, 3069, 3354
PleI	GAGTC	7 cut(s)	314, 1192, 2039, 2380, 2621, 3069, 3738
PpsI	GAGTC	7 cut(s)	314, 1192, 2039, 2380, 2621, 3069, 3738
PpuMI	RGGWCCY	1 cut(s)	3625
PshAI	GACNNNNGTC	1 cut(s)	2390
Psp124BI	GAGCTC	1 cut(s)	1084
Psp1406I	AACGTT	1 cut(s)	1694
Psp5II	RGGWCCY	1 cut(s)	3625
Psp6I	CCWGG	4 cut(s)	1575, 2781, 3069, 3354
PspFI	CCCAGC	1 cut(s)	3811
PspGI	CCWGG	4 cut(s)	1575, 2781, 3069, 3354
PspN4I	GGNNCC	2 cut(s)	183, 3626
PspPI	GGNCC	1 cut(s)	3625
PspPPI	RGGWCCY	1 cut(s)	3625
PstI	CTGCAG	3 cut(s)	562, 868, 3100
PstNI	CAGNNNCTG	5 cut(s)	856, 1124, 2527, 2941, 3001
PsuI	RGATCY	1 cut(s)	3202
PvuII	CAGCTG	3 cut(s)	563, 1264, 3055
RsaI	GTAC	2 cut(s)	3221, 3884
RsaNI	GTAC	2 cut(s)	3220, 3883
RseI	CAYNNNNRTG	2 cut(s)	2646, 2796
SacI	GAGCTC	1 cut(s)	1084
SapI	GCTCTTC	4 cut(s)	63, 132, 310, 864
SaqAI	TTAA	9 cut(s)	27, 144, 488, 702, 761, 887, 2402, 3035, 3264
Sau96I	GGNCC	1 cut(s)	3625
SchI	GAGTC	7 cut(s)	314, 1193, 2039, 2380, 2621, 3070, 3739
ScrFI	CCNGG	5 cut(s)	1577, 2783, 3071, 3293, 3356
SduI	GDGCHC	4 cut(s)	1084, 1118, 2335, 3373
SfaNI	GCATC	7 cut(s)	565, 978, 1332, 1659, 1986, 2390, 3681
SfcI	CTRYAG	5 cut(s)	558, 864, 1619, 2133, 3096
Sfr274I	CTCGAG	1 cut(s)	2681
SinI	GGWCC	1 cut(s)	3625
SlaI	CTCGAG	1 cut(s)	2681
SmiMI	CAYNNNNRTG	2 cut(s)	2646, 2796
SspI	AATATT	2 cut(s)	117, 971
SspMI	CTAG	7 cut(s)	815, 930, 1493, 1820, 2063, 2309, 3390
SstI	GAGCTC	1 cut(s)	1084
StyD4I	CCNGG	5 cut(s)	1575, 2781, 3069, 3291, 3354
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	8 cut(s)	231, 769, 2134, 2798, 3077, 3467, 3515, 3849
TaiI	ACGT	4 cut(s)	1697, 3533, 3564, 3608
TauI	GCSGC	3 cut(s)	506, 509, 3770
Tru1I	TTAA	9 cut(s)	27, 144, 488, 702, 761, 887, 2402, 3035, 3264
Tru9I	TTAA	9 cut(s)	27, 144, 488, 702, 761, 887, 2402, 3035, 3264
TscAI	CASTG	5 cut(s)	234, 2028, 2073, 2803, 2808
TseFI	GTSAC	3 cut(s)	44, 377, 1045
Tsp45I	GTSAC	3 cut(s)	44, 377, 1045
TspGWI	ACGGA	2 cut(s)	2420, 2570
TspRI	CASTG	5 cut(s)	234, 2028, 2073, 2803, 2808
VpaK11BI	GGWCC	1 cut(s)	3625
XagI	CCTNNNNNAGG	1 cut(s)	3924
XhoI	CTCGAG	1 cut(s)	2681
XmnI	GAANNNNTTC	3 cut(s)	657, 822, 1257
XspI	CTAG	7 cut(s)	815, 930, 1493, 1820, 2063, 2309, 3390
Zsp2I	ATGCAT	3 cut(s)	993, 1347, 1674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.