Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004928

Physical Location & Seq

Genomic Coordinates Reverse (-)

12227547 .. 12232680

Gene Structure 5134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4425 bp

ATGATGACAAAACACCGCTTTCGGGAGTCTATTAAGTCCTTGTTTGGAAGTCACATCGATGCAGAGAAGGATGAACAGCTCAAAGGGACTAAAATAGATATGGAGGACAAAGTGAACAGAATATTGAAGCTTCTAAAAGATGAAGATCTTGAAGAAAAAGATTCCAACCCGGTGGAGAACTCCAAAAAGGAACCTCTTGCAGAGCTAATTCAGGATTTCCACAAACAATACCAATCCCTCTATGCAGAATATGATCATCTAACAGGAGTGCTAAAGAAAAAAATGCGTGGCAAGCAAGATAAGGATAACAGTTCTTCATCGAGCTCAGAGTCTGATTCAGAATATTCTTCAAATGACAAGAAAAGTAAGAATGGACTACTGGAAGGTGACTATCAGAAAATAGCTGATGTTAAGCAAGAACTCGAATCAGCACATCTAGAAGTTGCTGACCTGAAGAGGAAACTGACGGCTACAATTGAAGAAAAAGAGGCGTTAAACTTGGAATATGCAACAGCTTTGAGCAAGATAGAAGAAACAGAGAAGATTTCCAAAGATTTGAAGACTGAAGCTGAAAGATTAGATGTTGAAAAACTGAAACTTTTGGCTGAGAATAGTGAACTAGATCAAAAACTTGAGACTGGTGGAAAGAAAGAAGCTGAACTGAGTCGAAAAGTGGAAGATTTGGAAAGAGAGAGAGATAATCTGATTAAGGAGAAAGAGACTAGTCTAAGAAGGATTGAAGATGGAGAAAATATTTCAGCAGACTTGAGAAGTTTGGTTGATCACATGAAAGATGAAAAAGTAATCCTCGAGCAACAACTAGAATCTCTTAGAGGGGACATCTCAAATATGAAGCATGAGCTGGAATCTTCAGAGCAGCAAGTGTCAGATTTAAGCAAAGCTAAGGAGGAAGAAACCTTGAAAGTTTTGGAGATCTCAAGTGAGATTCAGCAGGCACAGAATGTGATACAAGAACTCACAGATGAAGCTAGTCAGCTTAAGGAAAAACTCGATCAGAAGGAGCAGGACCTTGAATCTTTGCAAGGTCAGAAAAGAGATTTGGAAGTGAAGTTTGAGAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTCAAATCAATGTCTAAAGAGAGAGAAGCTGAACTTTCTGTTCTCACGAAGAAATTTGAGGAGACCAATAATGAACATAGTCAGGTACGGGAGCAATTAGGTCAGAGGGAAATGGAGTATTCAACTCTGTCTGAGAGGCACAAGCTGCATGAGAACGAAACATTGGCGCAAATAAAGGGATTGGAGGAAAAAGTGTCAGAGCTGAAATCGGCCCTCGAATCTTTGCAAGGCGAGAAAAGAAATATGGAAGTGAAGTTTGAAAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTTGAATCAATGTCAAAAGAGAGAGAAGCTGAACTTTCTGCTCTCACGAAGAAATTTGAGGAGACCAATAATGAACATAGTCAGGTGCGGGAGCAATTAGGTCAGAGGGAACTGGAGTATTCAACTCTGTCTGAGAAGCATACGCTGCATGAGAACGAAACATTGGCGCAAATAAAGGGATTGGAGGAAAAAGTGACAGAGCTGAAATCTGACCTCAAATTTTTGCAAGGCGAGAAAAGAGATGTGGAAGTGAAGTTTGAGTGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTCGAATCAATGTCAAAAGAGAGAGAAGCTGAACTTTTTGCTCTCACAAAGAAACTTGAGGAGACCAATAATGAACATAGTCAGGTACGGGAGCAATTAGGTCAGAGGGAAATGGAGTATTCAACTCTGTCTGAGAAGCATACGCTGCATGAGAACGAAACATTGGCGCAAATAAAGGGATTGGAGGAAAAAGTGACAGAGCTGAAATCGGCCCTCGAGTCATTGCAAGGCGAGAAAAGAGATATTGAAGTGAAGTTTGAAAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGCTTACAAGCTCAAATTTCAGAACTCGAATCAATGTCTAAAGAGAGAGAAGCTGAACTTTCTGCTCTCACAAAGGAACTTGAGGAGACCAATAATGAACATAGTCAGGTACGGGAGCAATTAGGTCAGAGGGAAATGGAGTATTCAACTCTGTTTGAGAAGCATACACTGCATGAGAACAAAACTTTGGCGCAAACAAAGGGATTGGAGGAAAAAGTGTCAGAGCTGAAATCGGCCCTTGAGTCTTTGCAAGGCGAGAAAAGAGATATTGAAGTGAAGTTTGAAAGCAAAGAAAAGCAACTGGTGGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTCGAATCAATGTCAAAAGAGAGAGGAGCTGAACTTTCTGCTCTCACAAAGAAACTTGAGGAAACCAATAATGAACATGGTCAGGTACGGGAGCAATTAGGTCAGAGGGAACTGGAGTATTCAACTCTGTCTGAGAAGCATACGCTGCATGAGAACGAAACATTGGCGCAAATAAAGGGATTGGAGGGAAAAGTGACAGAGCTGAATTCTGACCTCGAATTTTTGCAAGGCGAGAAAAGAGATGTGGAAGTGAAGTTTGAGAGCAAAGAAAAGCAACTGGCAGAGGAGAATGCAGGTTTACAAGCTCAAATTTCAGAACTCGAATCAATGTCAAAAGAGAGAGAAGCTGAACTTTCTGCTCTGACAAAGAAACTTCAGGATAGCAATGATGAATCATCGTCTACTGTAGCAGATTTGACAGCACAGATCAACAATCTGCTAGCAGACTTAAGTTCTGTGCGCCGTGAGAAAGTTGAATTGGAGGAAAATATGGCATCTAAAAGTGATGAAGCATCGATTCAGGTCAAGGGCTTAATGGAACAGATAAATGTATTGCAGCAGCAATTGGAGTCCCTACACAGCCAGAAAGCTGAATTGCAAGTGCAGCTTGAGAATAAAACTCAAGAAATTTCAGAGTACTTGATCCAGGTACAAATTCTGAATGAAGAGATAGCAAACAAGACGACGGATCATCAGAAGATTCTGGAAGAGAAAGAGATTTTGATAGCAGAAATGAAAGATCTTAAGCTAAAAGTGGAATCCATGCAGAATCAGAAGAATGAACTTGAAGAGGATATCAGAACGAAAATCCTAGAGCATGATCAGTTGAGAGCAGAAATGTTGGAGCTAAAGGATCAATTTTCTGTATTTGAGAAGACAATAGCACAAAGAGAGCTAGAATTCTCCTCTCTCCAAGAGAAACATGAAAGTGGACAGAACGAAGCCTCTGCTCAAGTAGTGGCCCTTGTGGCACAGGTTAACGGTCTACAAGAAGAGTTGGAGTCATTGCAAACCCAGAACAAGCAAATGGAGTTGCAGTTTGAGAGGGAAAAACAAGAACTTCTAGAGAGCTTGACACAGTTGCAAACTGATAAGATCGAGTTAACGAGCAAGATCACTGATCTTCAGAGACTGCTTAATGAACAGGAGGATTTATACACCAAGTTAAATGAGGAACATAAACAGCTTGAAGGTAAGTGTCAGGACTATGAGGTTAGCATTGAATCCAAAGATCAGATAATAGCTGATTTGGAACAAATGTCTGAAGACCTGAAAAGAGACCTTGAAGAAAAAGGTGATGAACTTGGTTCTTTGGTAGAGAAATCTCGCAATACTGAAGTTAAGCTCCGTCTGTCAAACCAGAAGCTCCGGGTTACAGAGCAAGTACTGGCCGAGAAGGAACACAACTTCAGAATTGCTGAGCTGAAATTCCAAGAAGAACAAAGAGTGCTCGAAGACAGGATTGCTGCATTGTCTGGTATAATCTCTGCAAACAATGAAGCTTATCAGAGAAACATCAACTGTATTTCAGACAATGTGAACTGTTCTTTGACTGCACTGGAATCTGTGATTAAGAAATTTGTGGATGACTATGCGAAGTATGAGAAGTGTATTGCTGAAACGTCGGAGCAGCTTCAGACTGCAAAGAAATGGGTTGCGGAAACAAATGATGAGAGAGAGAAGTTGAAGAGGGAGGTGGGGGCCCTAAGCAAACAACTGCAAGATAAAAAAGCGGAAGCATTGGTGTTTAGAGAGAGGGTTGAGAAGTTGGAGACAGAGGCGAGCAAGGAACAAGTGGAGAAGGGGGGTCTGATCAAAGCTGTGAATCAGCTTGAAAAGAAGGTAGAGGAGTTGAAGCAGATTGTGGAAGAGAAGAACAAGGGCATATTGGGTCTGGGAGAGGAGAAGCGGGAAGCCATAAGGCAGCTGTGCATATGGATAGAGTATCATCAGAGTCGCTATGATCATCTCAAGGAGGTGCTTTTAAAGATGGCTCCAAGAGGCCAGAGGAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031090 GO:0032386 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0042221 GO:0042306 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046822 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051223 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090087 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1900180 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903827 GO:1904589 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

1474

Amino Acids

169.82

Weight (kDa)

4.89

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	15 - 85	2.3e-17	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64330 AT5G41790 AT5G41790
fragaria_vesca	FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072 FvH4_5g04072
malus_domestica	MD06G1102300.v1.1 MD14G1121500.v1.1
prunus_persica	Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1 Prupe.5G115300_v2.0.a1
pyrus_communis	pycom06g09710
rosa_chinensis	RchiOBHm_Chr7g0195431
rosa_laevigata	RLG00000004121
rosa_multiflora	Rmu_sc0020044.1_g000001 Rmu_sc0020160.1_g000002 Rmu_sc0035983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260490
rosa_rugosa	Rorug07G0023200
rosa_samantha	Rh7AG150700 Rh7BG152100 Rh7CG155900 Rh7DG151700
rosa_wichuraiana	Rw7G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	5 cut(s)	1100, 1418, 1736, 2372, 2690
AccI	GTMKAC	2 cut(s)	2807, 3391
AciI	CCGC	5 cut(s)	16, 1540, 4064, 4139, 4315
AclWI	GGATC	3 cut(s)	3043, 3102, 3267
AcoI	YGGCCR	1 cut(s)	3795
AcuI	CTGAAG	9 cut(s)	473, 585, 855, 2765, 3515, 3690, 3762, 3799, 4025
AfaI	GTAC	7 cut(s)	1221, 1857, 2175, 2493, 3044, 3057, 3792
AfiI	CCNNNNNNNGG	2 cut(s)	22, 4417
AflII	CTTAAG	3 cut(s)	998, 2854, 3149
AhlI	ACTAGT	1 cut(s)	722
AjnI	CCWGG	1 cut(s)	3051
Alw21I	GWGCWC	2 cut(s)	326, 3858
Alw26I	GTCTC	9 cut(s)	629, 713, 1190, 1508, 1826, 2144, 3529, 3678, 4172
AlwI	GGATC	3 cut(s)	3043, 3102, 3267
AlwNI	CAGNNNCTG	2 cut(s)	332, 3538
Ama87I	CYCGRG	2 cut(s)	809, 1985
AoxI	GGCC	7 cut(s)	1344, 1980, 2298, 3366, 3795, 4107, 4408
ApaI	GGGCCC	1 cut(s)	4111
AspLEI	GCGC	6 cut(s)	1303, 1621, 1939, 2257, 2575, 2868
AspS9I	GGNCC	7 cut(s)	1027, 1345, 1981, 2299, 3367, 4107, 4108
AsuC2I	CCSGG	2 cut(s)	170, 3776
AsuHPI	GGTGA	2 cut(s)	398, 3713
AsuNHI	GCTAGC	1 cut(s)	2845
AvaI	CYCGRG	2 cut(s)	809, 1985
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	1 cut(s)	4111
BanII	GRGCYC	2 cut(s)	326, 4111
BbsI	GAAGAC	4 cut(s)	566, 3287, 3678, 3867
Bbv12I	GWGCWC	2 cut(s)	326, 3858
BccI	CCATC	2 cut(s)	737, 4390
BceAI	ACGGC	2 cut(s)	483, 2853
BcgI	CGANNNNNNTGC	2 cut(s)	3335, 3369
BciT130I	CCWGG	1 cut(s)	3053
BclI	TGATCA	5 cut(s)	253, 781, 3226, 4218, 4369
BcnI	CCSGG	2 cut(s)	170, 3776
BcoDI	GTCTC	9 cut(s)	629, 713, 1190, 1508, 1826, 2144, 3529, 3678, 4172
BcuI	ACTAGT	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	2811
BfrI	CTTAAG	3 cut(s)	998, 2854, 3149
BfuAI	ACCTGC	5 cut(s)	1100, 1418, 1736, 2372, 2690
BglI	GCCNNNNNGGC	1 cut(s)	3374
BglII	AGATCT	3 cut(s)	145, 933, 3145
BlpI	GCTNAGC	1 cut(s)	3825
BmcAI	AGTACT	2 cut(s)	3044, 3792
Bme1390I	CCNGG	3 cut(s)	170, 3053, 3776
Bme18I	GGWCC	1 cut(s)	1027
BmeT110I	CYCGRG	2 cut(s)	809, 1985
BmgT120I	GGNCC	7 cut(s)	1027, 1345, 1981, 2299, 3367, 4107, 4108
BmiI	GGNNCC	4 cut(s)	192, 4108, 4109, 4401
BmrFI	CCNGG	3 cut(s)	170, 3053, 3776
BmsI	GCATC	3 cut(s)	49, 2909, 2927
BmtI	GCTAGC	1 cut(s)	2849
BpiI	GAAGAC	4 cut(s)	566, 3287, 3678, 3867
BpmI	CTGGAG	2 cut(s)	1586, 2540
Bpu10I	CCTNAGC	2 cut(s)	903, 4112
Bpu1102I	GCTNAGC	1 cut(s)	3825
BpuMI	CCSGG	2 cut(s)	170, 3776
Bsa29I	ATCGAT	2 cut(s)	57, 2921
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	5 cut(s)	1190, 1508, 1826, 2144, 3678
BsaXI	ACNNNNNCTCC	2 cut(s)	3428, 3458
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 4417
Bse3DI	GCAATG	3 cut(s)	1991, 2797, 3410
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	3053
BseCI	ATCGAT	2 cut(s)	57, 2921
BseGI	GGATG	2 cut(s)	76, 3997
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	22, 4417
BseMI	GCAATG	3 cut(s)	1991, 2797, 3410
BseMII	CTCAG	8 cut(s)	339, 597, 653, 1257, 1575, 1893, 2529, 3816
BseSI	GKGCMC	1 cut(s)	4111
BsgI	GTGCAG	2 cut(s)	3029, 3945
BshFI	GGCC	7 cut(s)	1346, 1982, 2300, 3368, 3797, 4109, 4410
BshVI	ATCGAT	2 cut(s)	57, 2921
BsiHKAI	GWGCWC	2 cut(s)	326, 3858
BsiHKCI	CYCGRG	2 cut(s)	809, 1985
BsiSI	CCGG	2 cut(s)	170, 3775
BslFI	GGGAC	3 cut(s)	100, 851, 2962
BslI	CCNNNNNNNGG	2 cut(s)	22, 4417
BsmAI	GTCTC	9 cut(s)	629, 713, 1190, 1508, 1826, 2144, 3529, 3678, 4172
BsmFI	GGGAC	3 cut(s)	100, 851, 2962
BsmI	GAATGC	6 cut(s)	1111, 1429, 1747, 2065, 2383, 2701
BsnI	GGCC	7 cut(s)	1346, 1982, 2300, 3368, 3797, 4109, 4410
Bso31I	GGTCTC	5 cut(s)	1190, 1508, 1826, 2144, 3678
BsoBI	CYCGRG	2 cut(s)	809, 1985
Bsp120I	GGGCCC	1 cut(s)	4107
Bsp1286I	GDGCHC	3 cut(s)	326, 3858, 4111
Bsp1720I	GCTNAGC	1 cut(s)	3825
BspACI	CCGC	5 cut(s)	16, 1540, 4064, 4139, 4315
BspANI	GGCC	7 cut(s)	1346, 1982, 2300, 3368, 3797, 4109, 4410
BspCNI	CTCAG	8 cut(s)	338, 598, 654, 1258, 1576, 1894, 2530, 3817
BspDI	ATCGAT	2 cut(s)	57, 2921
BspLI	GGNNCC	4 cut(s)	192, 4108, 4109, 4401
BspMI	ACCTGC	5 cut(s)	1100, 1418, 1736, 2372, 2690
BspOI	GCTAGC	1 cut(s)	2849
BspPI	GGATC	3 cut(s)	3043, 3102, 3267
BspTI	CTTAAG	3 cut(s)	998, 2854, 3149
BspTNI	GGTCTC	5 cut(s)	1190, 1508, 1826, 2144, 3678
BsrDI	GCAATG	3 cut(s)	1991, 2797, 3410
Bst2UI	CCWGG	1 cut(s)	3053
Bst4CI	ACNGT	6 cut(s)	311, 2812, 3389, 3486, 3929, 3950
Bst6I	CTCTTC	7 cut(s)	449, 3066, 3108, 3189, 3393, 4088, 4269
BstAFI	CTTAAG	3 cut(s)	998, 2854, 3149
BstAPI	GCANNNNNTGC	5 cut(s)	1279, 1597, 1915, 2233, 2551
BstC8I	GCNNGC	5 cut(s)	293, 954, 2065, 2847, 4189
BstF5I	GGATG	2 cut(s)	76, 3997
BstHHI	GCGC	6 cut(s)	1303, 1621, 1939, 2257, 2575, 2868
BstMAI	GTCTC	9 cut(s)	629, 713, 1190, 1508, 1826, 2144, 3529, 3678, 4172
BstMWI	GCNNNNNNNGC	8 cut(s)	292, 1279, 1597, 1915, 2233, 2551, 3010, 3374
BstNI	CCWGG	1 cut(s)	3053
BstSCI	CCNGG	3 cut(s)	168, 3051, 3774
BstSFI	CTRYAG	1 cut(s)	2811
BstSLI	GKGCMC	1 cut(s)	4111
BstV2I	GAAGAC	4 cut(s)	566, 3287, 3678, 3867
BstX2I	RGATCY	3 cut(s)	145, 933, 3145
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	3 cut(s)	145, 933, 3145
Bsu15I	ATCGAT	2 cut(s)	57, 2921
BsuRI	GGCC	7 cut(s)	1346, 1982, 2300, 3368, 3797, 4109, 4410
BsuTUI	ATCGAT	2 cut(s)	57, 2921
BtsCI	GGATG	2 cut(s)	76, 3997
BtsI	GCAGTG	1 cut(s)	2231
BtsIMutI	CAGTG	3 cut(s)	2231, 3522, 3962
BveI	ACCTGC	5 cut(s)	1100, 1418, 1736, 2372, 2690
Cac8I	GCNNGC	5 cut(s)	293, 954, 2065, 2847, 4189
CaiI	CAGNNNCTG	2 cut(s)	332, 3538
CfoI	GCGC	6 cut(s)	1303, 1621, 1939, 2257, 2575, 2868
Cfr13I	GGNCC	7 cut(s)	1027, 1345, 1981, 2299, 3367, 4107, 4108
ClaI	ATCGAT	2 cut(s)	57, 2921
Csp6I	GTAC	7 cut(s)	1220, 1856, 2174, 2492, 3043, 3056, 3791
CviQI	GTAC	7 cut(s)	1220, 1856, 2174, 2492, 3043, 3056, 3791
DraI	TTTAAA	1 cut(s)	4392
EaeI	YGGCCR	1 cut(s)	3795
Eam1104I	CTCTTC	7 cut(s)	449, 3066, 3108, 3189, 3393, 4088, 4269
EarI	CTCTTC	7 cut(s)	449, 3066, 3108, 3189, 3393, 4088, 4269
Ecl136II	GAGCTC	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	326, 4111
Eco31I	GGTCTC	5 cut(s)	1190, 1508, 1826, 2144, 3678
Eco32I	GATATC	1 cut(s)	3202
Eco47I	GGWCC	1 cut(s)	1027
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	9 cut(s)	473, 585, 855, 2765, 3515, 3690, 3762, 3799, 4025
Eco88I	CYCGRG	2 cut(s)	809, 1985
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	3 cut(s)	1027, 4107, 4108
EcoRI	GAATTC	2 cut(s)	2611, 3305
EcoRII	CCWGG	1 cut(s)	3051
EcoRV	GATATC	1 cut(s)	3202
EcoT38I	GRGCYC	2 cut(s)	326, 4111
FaqI	GGGAC	3 cut(s)	100, 851, 2962
FauI	CCCGC	2 cut(s)	1533, 4308
FauNDI	CATATG	1 cut(s)	4340
FbaI	TGATCA	5 cut(s)	253, 781, 3226, 4218, 4369
FblI	GTMKAC	2 cut(s)	2807, 3391
FokI	GGATG	2 cut(s)	83, 4004
FriOI	GRGCYC	2 cut(s)	326, 4111
GlaI	GCGC	6 cut(s)	1302, 1620, 1938, 2256, 2574, 2867
GsuI	CTGGAG	2 cut(s)	1586, 2540
HaeIII	GGCC	7 cut(s)	1346, 1982, 2300, 3368, 3797, 4109, 4410
HapII	CCGG	2 cut(s)	170, 3775
HhaI	GCGC	6 cut(s)	1303, 1621, 1939, 2257, 2575, 2868
Hin6I	GCGC	6 cut(s)	1301, 1619, 1937, 2255, 2573, 2866
HinP1I	GCGC	6 cut(s)	1301, 1619, 1937, 2255, 2573, 2866
HincII	GTYRAC	2 cut(s)	3385, 3510
HindII	GTYRAC	2 cut(s)	3385, 3510
HindIII	AAGCTT	2 cut(s)	128, 3906
HpaI	GTTAAC	2 cut(s)	3385, 3510
HpaII	CCGG	2 cut(s)	170, 3775
HphI	GGTGA	2 cut(s)	398, 3713
Hpy99I	CGWCG	2 cut(s)	3094, 4033
HpyAV	CCTTC	8 cut(s)	61, 377, 726, 1012, 3590, 3796, 4201, 4240
HpyCH4III	ACNGT	6 cut(s)	311, 2812, 3389, 3486, 3929, 3950
HpyCH4IV	ACGT	1 cut(s)	4028
HpyF10VI	GCNNNNNNNGC	8 cut(s)	292, 1279, 1597, 1915, 2233, 2551, 3010, 3374
HpySE526I	ACGT	1 cut(s)	4028
HspAI	GCGC	6 cut(s)	1301, 1619, 1937, 2255, 2573, 2866
Ksp22I	TGATCA	5 cut(s)	253, 781, 3226, 4218, 4369
KspAI	GTTAAC	2 cut(s)	3385, 3510
LweI	GCATC	3 cut(s)	49, 2909, 2927
MaeII	ACGT	1 cut(s)	4028
MaeIII	GTNAC	6 cut(s)	50, 386, 1645, 1963, 2599, 3778
MfeI	CAATTG	2 cut(s)	474, 2969
MflI	RGATCY	3 cut(s)	145, 933, 3145
MhlI	GDGCHC	3 cut(s)	326, 3858, 4111
MlyI	GAGTC	8 cut(s)	35, 338, 673, 1997, 2315, 2984, 3416, 4369
MmeI	TCCRAC	5 cut(s)	189, 3228, 3384, 4011, 4155
MslI	CAYNNNNRTG	2 cut(s)	57, 3333
MspA1I	CMGCKG	1 cut(s)	4333
MspCI	CTTAAG	3 cut(s)	998, 2854, 3149
MspI	CCGG	2 cut(s)	170, 3775
MspR9I	CCNGG	3 cut(s)	170, 3053, 3776
MunI	CAATTG	2 cut(s)	474, 2969
Mva1269I	GAATGC	6 cut(s)	1111, 1429, 1747, 2065, 2383, 2701
MvaI	CCWGG	1 cut(s)	3053
MwoI	GCNNNNNNNGC	8 cut(s)	292, 1279, 1597, 1915, 2233, 2551, 3010, 3374
NciI	CCSGG	2 cut(s)	170, 3776
NdeI	CATATG	1 cut(s)	4340
NheI	GCTAGC	1 cut(s)	2845
NlaIV	GGNNCC	4 cut(s)	192, 4108, 4109, 4401
NmeAIII	GCCGAG	1 cut(s)	3823
NmuCI	GTSAC	5 cut(s)	50, 386, 1645, 1963, 2599
PaeR7I	CTCGAG	2 cut(s)	809, 1985
PctI	GAATGC	6 cut(s)	1111, 1429, 1747, 2065, 2383, 2701
PleI	GAGTC	8 cut(s)	34, 337, 672, 1996, 2314, 2983, 3415, 4368
PpsI	GAGTC	8 cut(s)	34, 337, 672, 1996, 2314, 2983, 3415, 4368
PpuMI	RGGWCCY	1 cut(s)	1027
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	1027
Psp6I	CCWGG	1 cut(s)	3051
PspGI	CCWGG	1 cut(s)	3051
PspN4I	GGNNCC	4 cut(s)	192, 4108, 4109, 4401
PspOMI	GGGCCC	1 cut(s)	4107
PspPI	GGNCC	7 cut(s)	1027, 1345, 1981, 2299, 3367, 4107, 4108
PspPPI	RGGWCCY	1 cut(s)	1027
PspXI	VCTCGAGB	2 cut(s)	809, 1985
PstNI	CAGNNNCTG	2 cut(s)	332, 3538
PsuI	RGATCY	3 cut(s)	145, 933, 3145
PvuII	CAGCTG	1 cut(s)	4333
RsaI	GTAC	7 cut(s)	1221, 1857, 2175, 2493, 3044, 3057, 3792
RsaNI	GTAC	7 cut(s)	1220, 1856, 2174, 2492, 3043, 3056, 3791
RseI	CAYNNNNRTG	2 cut(s)	57, 3333
SacI	GAGCTC	1 cut(s)	326
Sau96I	GGNCC	7 cut(s)	1027, 1345, 1981, 2299, 3367, 4107, 4108
ScaI	AGTACT	2 cut(s)	3044, 3792
SchI	GAGTC	8 cut(s)	35, 338, 673, 1997, 2315, 2984, 3416, 4369
ScrFI	CCNGG	3 cut(s)	170, 3053, 3776
SduI	GDGCHC	3 cut(s)	326, 3858, 4111
SfaNI	GCATC	3 cut(s)	49, 2909, 2927
SfcI	CTRYAG	1 cut(s)	2811
Sfr274I	CTCGAG	2 cut(s)	809, 1985
SinI	GGWCC	1 cut(s)	1027
SlaI	CTCGAG	2 cut(s)	809, 1985
SmiMI	CAYNNNNRTG	2 cut(s)	57, 3333
SpeI	ACTAGT	1 cut(s)	722
SsiI	CCGC	5 cut(s)	16, 1540, 4064, 4139, 4315
SspI	AATATT	3 cut(s)	123, 344, 754
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	168, 3051, 3774
TaaI	ACNGT	6 cut(s)	311, 2812, 3389, 3486, 3929, 3950
TaiI	ACGT	1 cut(s)	4031
TatI	WGTACW	2 cut(s)	3042, 3790
TscAI	CASTG	3 cut(s)	2238, 3529, 3969
TseFI	GTSAC	5 cut(s)	50, 386, 1645, 1963, 2599
Tsp45I	GTSAC	5 cut(s)	50, 386, 1645, 1963, 2599
TspGWI	ACGGA	2 cut(s)	3107, 3743
TspRI	CASTG	3 cut(s)	2238, 3529, 3969
Vha464I	CTTAAG	3 cut(s)	998, 2854, 3149
VpaK11BI	GGWCC	1 cut(s)	1027
XbaI	TCTAGA	2 cut(s)	436, 3469
XhoI	CTCGAG	2 cut(s)	809, 1985
XmiI	GTMKAC	2 cut(s)	2807, 3391
ZrmI	AGTACT	2 cut(s)	3044, 3792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.