Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

24515758 .. 24518601

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCTCCATTGCCTTATAGTTCTTGGCCTCTGATACTATTGTTAGTATTGTGGTGCATGGTAGCTAGATTATCAAACGGAGCTTCCAACAATGTAAAGGTTGGAATCATTTCAAAGGTGGAAGATGCTACGAATTTCCATATCTATTATGGACAGACCTTTAAAGTCATCAAAAACGCCATTGATGGCAAGAGCTATCTCCTTATTCAGAACACTTCTAGAATGGCGGTTCGGACAAAGTATTGTACTTCCAGGATAAAGTCTTATGTGATTCCACTTCTAAATTACTCATTAGACACTCAATCTTCTCAAGGAAGTGTTCCGGTTTCTTTCTTTGAGTTACTTGGATTACTCGGAAGCTTGAAGGGAATAACATCGGATGAGGTAGTTTCACCGTGTCTTCTGAAACTGTGTGAGGCAGGGGAAGTAGTTAAGCTTGACAAAGGTGAACAACTATCTCAATTCGCGGCGCATTTCATCAGCGATACTGATCAACCTCAGACTTGCAATTTTGCAAACTTTTTTCCACTTAGTGAAGGAACACCTCTTCAGCGAGCGGAGTGGATCAAATTCCTTGGAGCGTTTACAAATCTTGAAACTAAAGCCAATCAAGTCTATGACTCGGTTAAAGCAAGCTATACTTGCTTGTCTCAAATGGCTGCCAACAAGACAAAATCCTTCAAGCCGATTGTAGCCTGGATGGGATATGATCAAAATGGAGGCATGTGGAGTTTTACTAAGGAATCACACAAGCTAAAGTTTGTAGAAGATGCTGGTGGTGAAAATATCGACAAGTCTATTAACAAGGTCTCTTACAATGTCTCTGATCCTGATGATTTGGAAGCACTCCATGCCATTTTATGTACTGTGGATGCTGTGATCGATGAAACGCTATCATCTGACCCTCAAAACTACACACAGACAACGTTCTTGGCGAACATAAACGTGGATGATAACTCTTGTTTTGCGTTTCTTGCTAATCAAAGCATCTGGAGATATGACAAAAGGGTCAGAAACAGAACAACTCTTGACTGGTATGACGGAGCAATCTCGCAACCAAATCTTGTACTGGCTGACATTGTTGAAGCCTTGTTTCCAACGGGAAACTATACAACTTCGTACTTCAGAAACATTGCTAAGGGTGAAGGAGTCATAAACATTAGTCCGGATATGTGTGATAGAGACGCATCATTGCCGTTAGTTCCTTCAATTCCAGCTTGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

45.21

Weight (kDa)

5.26

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1007
AccB7I	CCANNNNNTGG	1 cut(s)	1220
AccBSI	CCGCTC	1 cut(s)	557
AccII	CGCG	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	1165
AciI	CCGC	3 cut(s)	227, 467, 557
AclI	AACGTT	1 cut(s)	926
AclWI	GGATC	2 cut(s)	572, 821
AcsI	RAATTY	2 cut(s)	133, 569
AcuI	CTGAAG	2 cut(s)	533, 1108
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	4 cut(s)	247, 865, 1068, 1121
AfiI	CCNNNNNNNGG	1 cut(s)	1220
AgsI	TTSAA	6 cut(s)	114, 364, 596, 682, 1085, 1209
AjnI	CCWGG	2 cut(s)	251, 695
AluBI	AGCT	8 cut(s)	65, 83, 195, 360, 436, 636, 754, 1217
AluI	AGCT	8 cut(s)	65, 83, 195, 360, 436, 636, 754, 1217
Alw26I	GTCTC	5 cut(s)	9, 654, 814, 826, 1176
AlwI	GGATC	2 cut(s)	572, 821
Aor13HI	TCCGGA	1 cut(s)	1165
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	133, 569
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	472
AsuHPI	GGTGA	4 cut(s)	384, 458, 791, 1154
BaeI	ACNNNNGTAYC	2 cut(s)	26, 59
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	2 cut(s)	179, 694
BceAI	ACGGC	1 cut(s)	1180
BciT130I	CCWGG	2 cut(s)	253, 697
BclI	TGATCA	2 cut(s)	490, 709
BcoDI	GTCTC	5 cut(s)	9, 654, 814, 826, 1176
BfaI	CTAG	2 cut(s)	66, 219
BisI	GCNGC	2 cut(s)	468, 660
BlsI	GCNGC	2 cut(s)	469, 661
Bme1390I	CCNGG	2 cut(s)	253, 697
BmrFI	CCNGG	2 cut(s)	253, 697
BmsI	GCATC	5 cut(s)	115, 760, 862, 996, 1196
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	1012
Bpu10I	CCTNAGC	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	882
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	2 cut(s)	322, 1165
Bsc4I	CCNNNNNNNGG	1 cut(s)	1220
Bse1I	ACTGG	2 cut(s)	1037, 1074
Bse3DI	GCAATG	3 cut(s)	8, 1131, 1190
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	1165
BseBI	CCWGG	2 cut(s)	253, 697
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	4 cut(s)	385, 705, 877, 955
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	1220
BseMI	GCAATG	3 cut(s)	8, 1131, 1190
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	2 cut(s)	1037, 1074
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	882
BsiSI	CCGG	2 cut(s)	323, 1166
BslI	CCNNNNNNNGG	1 cut(s)	1220
BsmAI	GTCTC	5 cut(s)	9, 654, 814, 826, 1176
BsmBI	CGTCTC	1 cut(s)	1176
BsnI	GGCC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	814
Bsp13I	TCCGGA	1 cut(s)	1165
Bsp143I	GATC	5 cut(s)	490, 564, 709, 826, 879
BspACI	CCGC	3 cut(s)	227, 467, 557
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	882
BspEI	TCCGGA	1 cut(s)	1165
BspFNI	CGCG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	572, 821
BspTNI	GGTCTC	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	557
BsrDI	GCAATG	3 cut(s)	8, 1131, 1190
BsrI	ACTGG	2 cut(s)	1037, 1074
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	5 cut(s)	490, 564, 709, 826, 879
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	253, 697
Bst4CI	ACNGT	3 cut(s)	396, 411, 868
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	2 cut(s)	555, 634
BstDEI	CTNAG	4 cut(s)	498, 530, 738, 1137
BstF5I	GGATG	4 cut(s)	385, 705, 877, 955
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	5 cut(s)	493, 567, 712, 829, 882
BstMAI	GTCTC	5 cut(s)	9, 654, 814, 826, 1176
BstMBI	GATC	5 cut(s)	490, 564, 709, 826, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	642, 851, 974
BstNI	CCWGG	2 cut(s)	253, 697
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	2 cut(s)	251, 695
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	28
BsuTUI	ATCGAT	1 cut(s)	882
BtsCI	GGATG	4 cut(s)	385, 705, 877, 955
Cac8I	GCNNGC	2 cut(s)	555, 634
CfoI	GCGC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	882
CseI	GACGC	1 cut(s)	1193
Csp6I	GTAC	4 cut(s)	246, 864, 1067, 1120
CviAII	CATG	3 cut(s)	58, 724, 851
CviQI	GTAC	4 cut(s)	246, 864, 1067, 1120
DdeI	CTNAG	4 cut(s)	498, 530, 738, 1137
DpnI	GATC	5 cut(s)	492, 566, 711, 828, 881
DpnII	GATC	5 cut(s)	490, 564, 709, 826, 879
DraI	TTTAAA	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	533
DrdI	GACNNNNNNGTC	1 cut(s)	1007
DseDI	GACNNNNNNGTC	1 cut(s)	1007
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	533, 1108
EcoRII	CCWGG	2 cut(s)	251, 695
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	1176
FaeI	CATG	3 cut(s)	61, 727, 854
FalI	AAGNNNNNCTT	2 cut(s)	625, 657
FatI	CATG	3 cut(s)	57, 723, 850
FbaI	TGATCA	2 cut(s)	490, 709
Fnu4HI	GCNGC	2 cut(s)	468, 660
FokI	GGATG	4 cut(s)	392, 712, 884, 962
Fsp4HI	GCNGC	2 cut(s)	468, 660
FspBI	CTAG	2 cut(s)	66, 219
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	2 cut(s)	468, 660
GsuI	CTGGAG	1 cut(s)	1012
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	2 cut(s)	323, 1166
HgaI	GACGC	1 cut(s)	1193
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	61, 727, 854
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HindIII	AAGCTT	2 cut(s)	358, 434
HinfI	GANTC	5 cut(s)	105, 271, 620, 743, 1149
HpaII	CCGG	2 cut(s)	323, 1166
HphI	GGTGA	4 cut(s)	384, 458, 791, 1154
Hpy166II	GTNNAC	2 cut(s)	449, 585
Hpy188III	TCNNGA	6 cut(s)	219, 593, 830, 991, 1028, 1166
Hpy8I	GTNNAC	2 cut(s)	449, 585
HpyAV	CCTTC	5 cut(s)	358, 530, 688, 1139, 1215
HpyCH4III	ACNGT	3 cut(s)	396, 411, 868
HpyCH4IV	ACGT	2 cut(s)	926, 945
HpyCH4V	TGCA	3 cut(s)	57, 507, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	642, 851, 974
HpyF3I	CTNAG	4 cut(s)	498, 530, 738, 1137
HpySE526I	ACGT	2 cut(s)	926, 945
Hsp92II	CATG	3 cut(s)	61, 727, 854
HspAI	GCGC	1 cut(s)	470
Kpn2I	TCCGGA	1 cut(s)	1165
Ksp22I	TGATCA	2 cut(s)	490, 709
Kzo9I	GATC	5 cut(s)	490, 564, 709, 826, 879
LmnI	GCTCC	3 cut(s)	80, 578, 1043
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	5 cut(s)	115, 760, 862, 996, 1196
MaeI	CTAG	2 cut(s)	66, 219
MaeII	ACGT	2 cut(s)	926, 945
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	5 cut(s)	492, 566, 711, 828, 881
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	5 cut(s)	490, 564, 709, 826, 879
MboII	GAAGA	5 cut(s)	134, 297, 392, 539, 779
MluCI	AATT	6 cut(s)	133, 283, 461, 508, 569, 1209
MlyI	GAGTC	2 cut(s)	614, 1158
MmeI	TCCRAC	3 cut(s)	82, 111, 1121
MnlI	CCTC	7 cut(s)	39, 376, 409, 507, 555, 713, 915
MroI	TCCGGA	1 cut(s)	1165
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	4 cut(s)	162, 432, 627, 801
MslI	CAYNNNNRTG	1 cut(s)	944
MspI	CCGG	2 cut(s)	323, 1166
MspR9I	CCNGG	2 cut(s)	253, 697
MvaI	CCWGG	2 cut(s)	253, 697
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	642, 851, 974
NdeII	GATC	5 cut(s)	490, 564, 709, 826, 879
NlaIII	CATG	3 cut(s)	61, 727, 854
NspI	RCATGY	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	105, 271, 743
PflMI	CCANNNNNTGG	1 cut(s)	1220
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	469, 661
PleI	GAGTC	2 cut(s)	614, 1157
PpsI	GAGTC	2 cut(s)	614, 1157
Psp1406I	AACGTT	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	251, 695
PspGI	CCWGG	2 cut(s)	251, 695
RsaI	GTAC	4 cut(s)	247, 865, 1068, 1121
RsaNI	GTAC	4 cut(s)	246, 864, 1067, 1120
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	4 cut(s)	162, 432, 627, 801
SatI	GCNGC	2 cut(s)	468, 660
Sau3AI	GATC	5 cut(s)	490, 564, 709, 826, 879
SchI	GAGTC	2 cut(s)	614, 1158
ScrFI	CCNGG	2 cut(s)	253, 697
SfaNI	GCATC	5 cut(s)	115, 760, 862, 996, 1196
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	133, 283, 461, 508, 569, 1209
SsiI	CCGC	3 cut(s)	227, 467, 557
SspMI	CTAG	2 cut(s)	66, 219
StyD4I	CCNGG	2 cut(s)	251, 695
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	396, 411, 868
TaiI	ACGT	2 cut(s)	929, 948
TaqI	TCGA	2 cut(s)	789, 882
TasI	AATT	6 cut(s)	133, 283, 461, 508, 569, 1209
TatI	WGTACW	3 cut(s)	245, 863, 1066
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	105, 271, 743
Tru1I	TTAA	4 cut(s)	162, 432, 627, 801
Tru9I	TTAA	4 cut(s)	162, 432, 627, 801
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	2 cut(s)	466, 900
TspGWI	ACGGA	2 cut(s)	93, 1056
Van91I	CCANNNNNTGG	1 cut(s)	1220
XapI	RAATTY	2 cut(s)	133, 569
XbaI	TCTAGA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	2 cut(s)	66, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.