Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

19006167 .. 19009994

Gene Structure 3828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27290.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGATGAATCTATCTGCTACTTTGTGTTTTAGAGCAAGAACTTGTTGGGTGCAAAGCTTGGTTTTATTAGTCTTCATTGTGCTCTGCCATGGAGTAGATGCGAGCAGTATTAAGTCTGTGAAAGTGAATAACAGTAGCATTTCCAAGGTGGAAGACGCAGTTAATTTCCATATATATTATGGGCAGGCCTTTAAAGTCATCAAGAATGCCATTGACGGCAAGAGCTACCTCCTCATCCAGAACAACTCAAGAATGGCATCAAGGACAAAATATTGCACTTCAAGGATCAAATCATTTGTCGTTCCCTTATCAAATTACTCAATCGACGCCGATTATTTTCCAGTTTCCTTTTTTGAGCTCCTTGGCGTATTACAGAACTTAAAGGGAATTACATCAGACTCCGTGGCTTCTCAATGCGTATTGAAATTGTATGAAGCTGGAGAAATTGGTATAATCAACAAAAGTGAGACACTAGCGCTATCACAATTTGGAGCACATTTCATCACCAACAGTGATCGACCACAATCTTGCAATTTTGCCTCTTTTGTTCCTTATGGAGAGGAAACCCCTTTGCAGAGAGCAGAATGGATCAAGTTCTTGGGAGTGTTTGCAAATGCTGAAAGCAAGGCCAATCAAGTATATAATGCTGTTAGAGAGAATTATCAATGTTTGCTCAAAGTCGCAAAAGGCAGAACATCGTTCAAACCAACTGTAGCATGGATGCAGTATGATAATGGTATATGGTCTTTCACAGAGGAAACATACAAGTTGAAGTATGTGGAAGACGCAGGTGGTGAGAATGTAGATGCTTCTATCAACAAAGTTACCTATAACATCTCTAATCCGGAGGATTTGGATGAATTGCATGCCATCCTATGTACAGTGGATGTGGTTATTGACGAAACATATACTTCTGATCCAGCTGTTTACAATACATCAGCATTTCTTCAAAATATAAACGTCGAAGATCATTCTTGTTTCGTTTTTCTCTCTAACCAAAGCTTGTGGAGATACGATAAAAGAATTAGAAACCCAACTGCACTCGACTGGTACAATGGAGCAGTCTCCCAGCCACAGTTGGTTTTAGCAGATTTTATTGAAGTTTTGTTCCCTACTGGAAACTATACAACAACATATTTCAGAAATATAGCCAAGGATGAAGGAGTTGTGCAGATTACTTCTGAGATGTGCGATAGGGATGTCTCTGTAGCAATGGAGCCGACAATAACAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

46.3

Weight (kDa)

5.21

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AccIII	TCCGGA	1 cut(s)	844
AclWI	GGATC	3 cut(s)	293, 596, 911
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	880, 1052
AfeI	AGCGCT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	282, 424, 703, 772, 950, 1100
AluBI	AGCT	6 cut(s)	57, 225, 358, 437, 923, 1002
AluI	AGCT	6 cut(s)	57, 225, 358, 437, 923, 1002
Alw21I	GWGCWC	3 cut(s)	84, 360, 496
Alw26I	GTCTC	3 cut(s)	461, 1069, 1207
AlwI	GGATC	3 cut(s)	293, 596, 911
Aor13HI	TCCGGA	1 cut(s)	844
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	2 cut(s)	186, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspLEI	GCGC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	496, 806
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	3 cut(s)	64, 159, 789
Bbv12I	GWGCWC	3 cut(s)	84, 360, 496
BccI	CCATC	1 cut(s)	878
BceAI	ACGGC	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	461, 1069, 1207
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	2 cut(s)	711, 1206
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	779
BmiI	GGNNCC	1 cut(s)	1218
BmsI	GCATC	4 cut(s)	88, 266, 711, 796
BpiI	GAAGAC	3 cut(s)	64, 159, 789
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	5 cut(s)	88, 144, 361, 402, 1152
BsaWI	WCCGGW	1 cut(s)	844
Bse1I	ACTGG	3 cut(s)	341, 1052, 1120
Bse3DI	GCAATG	1 cut(s)	1218
BseAI	TCCGGA	1 cut(s)	844
BseDI	CCNNGG	5 cut(s)	88, 144, 361, 402, 1152
BseGI	GGATG	7 cut(s)	234, 726, 862, 870, 892, 1162, 1204
BseMI	GCAATG	1 cut(s)	1218
BseMII	CTCAG	1 cut(s)	1173
BseNI	ACTGG	3 cut(s)	341, 1052, 1120
BseRI	GAGGAG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	1068
BsgI	GTGCAG	2 cut(s)	1023, 1190
BshFI	GGCC	2 cut(s)	188, 629
BsiHKAI	GWGCWC	3 cut(s)	84, 360, 496
BsiSI	CCGG	1 cut(s)	845
BsmAI	GTCTC	3 cut(s)	461, 1069, 1207
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	188, 629
Bsp1286I	GDGCHC	3 cut(s)	84, 360, 496
Bsp13I	TCCGGA	1 cut(s)	844
Bsp1407I	TGTACA	1 cut(s)	878
Bsp143I	GATC	5 cut(s)	285, 514, 588, 916, 967
Bsp19I	CCATGG	1 cut(s)	88
BspANI	GGCC	2 cut(s)	188, 629
BspCNI	CTCAG	1 cut(s)	1174
BspEI	TCCGGA	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	1218
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	293, 596, 911
BsrDI	GCAATG	1 cut(s)	1218
BsrGI	TGTACA	1 cut(s)	878
BsrI	ACTGG	3 cut(s)	341, 1052, 1120
BssECI	CCNNGG	5 cut(s)	88, 144, 361, 402, 1152
BssMI	GATC	5 cut(s)	285, 514, 588, 916, 967
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	4 cut(s)	88, 144, 361, 1152
Bst4CI	ACNGT	6 cut(s)	134, 512, 712, 883, 1077, 1231
BstACI	GRCGYC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	878
BstC8I	GCNNGC	3 cut(s)	103, 186, 867
BstDEI	CTNAG	1 cut(s)	1182
BstDSI	CCRYGG	2 cut(s)	88, 402
BstF5I	GGATG	7 cut(s)	234, 726, 862, 870, 892, 1162, 1204
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	288, 517, 591, 919, 970
BstMAI	GTCTC	3 cut(s)	461, 1069, 1207
BstMBI	GATC	5 cut(s)	285, 514, 588, 916, 967
BstNSI	RCATGY	1 cut(s)	869
BstSFI	CTRYAG	2 cut(s)	711, 1206
BstV2I	GAAGAC	3 cut(s)	64, 159, 789
BsuRI	GGCC	2 cut(s)	188, 629
BtgI	CCRYGG	2 cut(s)	88, 402
BtsCI	GGATG	7 cut(s)	234, 726, 862, 870, 892, 1162, 1204
BtsIMutI	CAGTG	2 cut(s)	517, 888
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	103, 186, 867
CfoI	GCGC	1 cut(s)	478
CseI	GACGC	3 cut(s)	164, 335, 794
Csp6I	GTAC	2 cut(s)	879, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	986, 1021
CviAII	CATG	3 cut(s)	89, 717, 866
CviQI	GTAC	2 cut(s)	879, 1051
DdeI	CTNAG	1 cut(s)	1182
DpnI	GATC	5 cut(s)	287, 516, 590, 918, 969
DpnII	GATC	5 cut(s)	285, 514, 588, 916, 967
DraI	TTTAAA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	4 cut(s)	88, 144, 361, 1152
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	360
Eco47III	AGCGCT	1 cut(s)	477
Eco53kI	GAGCTC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	358
EcoT14I	CCWWGG	4 cut(s)	88, 144, 361, 1152
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	4 cut(s)	88, 144, 361, 1152
FaeI	CATG	3 cut(s)	92, 720, 869
FatI	CATG	3 cut(s)	88, 716, 865
FokI	GGATG	7 cut(s)	221, 733, 857, 869, 899, 1169, 1211
FriOI	GRGCYC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	477
GsaI	CCCAGC	1 cut(s)	1072
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	188, 629
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	3 cut(s)	164, 335, 794
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	92, 720, 869
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HindIII	AAGCTT	2 cut(s)	55, 1000
HinfI	GANTC	2 cut(s)	7, 398
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	496, 806
Hpy166II	GTNNAC	1 cut(s)	928
Hpy188I	TCNGA	4 cut(s)	397, 916, 1142, 1183
Hpy188III	TCNNGA	4 cut(s)	202, 238, 249, 845
Hpy8I	GTNNAC	1 cut(s)	928
Hpy99I	CGWCG	2 cut(s)	329, 965
HpyAV	CCTTC	1 cut(s)	1154
HpyCH4III	ACNGT	6 cut(s)	134, 512, 712, 883, 1077, 1231
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	9 cut(s)	52, 276, 531, 574, 611, 724, 865, 1040, 1171
HpyF3I	CTNAG	1 cut(s)	1182
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	92, 720, 869
HspAI	GCGC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	844
Kzo9I	GATC	5 cut(s)	285, 514, 588, 916, 967
LmnI	GCTCC	4 cut(s)	363, 491, 1058, 1216
LweI	GCATC	4 cut(s)	88, 266, 711, 796
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	5 cut(s)	287, 516, 590, 918, 969
MboI	GATC	5 cut(s)	285, 514, 588, 916, 967
MboII	GAAGA	5 cut(s)	64, 164, 794, 938, 977
MhlI	GDGCHC	3 cut(s)	84, 360, 496
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	239, 242, 550, 553, 748, 841
MroI	TCCGGA	1 cut(s)	844
MseI	TTAA	4 cut(s)	111, 162, 192, 380
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	5 cut(s)	285, 514, 588, 916, 967
NlaIII	CATG	3 cut(s)	92, 720, 869
NlaIV	GGNNCC	1 cut(s)	1218
NspI	RCATGY	1 cut(s)	869
PaeI	GCATGC	1 cut(s)	869
PaqCI	CACCTGC	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	1068
PspN4I	GGNNCC	1 cut(s)	1218
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	880, 1052
RsaNI	GTAC	2 cut(s)	879, 1051
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	111, 162, 192, 380
Sau3AI	GATC	5 cut(s)	285, 514, 588, 916, 967
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	3 cut(s)	84, 360, 496
SfaNI	GCATC	4 cut(s)	88, 266, 711, 796
SfcI	CTRYAG	2 cut(s)	711, 1206
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SphI	GCATGC	1 cut(s)	869
SseBI	AGGCCT	1 cut(s)	188
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	188
StyI	CCWWGG	4 cut(s)	88, 144, 361, 1152
TaaI	ACNGT	6 cut(s)	134, 512, 712, 883, 1077, 1231
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	4 cut(s)	324, 517, 963, 1044
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	4 cut(s)	111, 162, 192, 380
Tru9I	TTAA	4 cut(s)	111, 162, 192, 380
TscAI	CASTG	2 cut(s)	517, 888
TspDTI	ATGAA	6 cut(s)	20, 64, 447, 490, 873, 1173
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	2 cut(s)	517, 888
XceI	RCATGY	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 714
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.